Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.06381 * 2 1 4 4 C 1.53996 * 109.91473 * 238.79897 * 2 1 3 5 5 H 1.09000 * 110.39302 * 358.38451 * 4 2 1 6 6 N 1.46506 * 110.30583 * 120.50139 * 4 2 1 7 7 C 1.34782 * 119.99735 * 202.16897 * 6 4 2 8 8 O 1.21276 * 120.00192 * 0.02562 * 7 6 4 9 9 C 1.50695 * 119.99669 * 180.02562 * 7 6 4 10 10 S 1.81000 * 109.47038 * 180.02562 * 9 7 6 11 11 C 1.76203 * 99.99939 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00128 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99790 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00093 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99930 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47090 * 60.00456 * 15 13 11 17 17 H 1.48502 * 109.47139 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47318 * 300.00273 * 15 13 11 19 19 C 1.54595 * 105.13968 * 239.41988 * 4 2 1 20 20 C 1.54937 * 102.92154 * 338.04205 * 19 4 2 21 21 N 1.47897 * 109.92005 * 121.20757 * 2 1 3 22 22 C 1.46901 * 111.00300 * 265.19585 * 21 2 1 23 23 C 1.50697 * 109.46838 * 176.70743 * 22 21 2 24 24 O 1.21274 * 120.00513 * 353.75530 * 23 22 21 25 25 N 1.34783 * 119.99391 * 173.75974 * 23 22 21 26 26 C 1.46503 * 119.99645 * 179.97438 * 25 23 22 27 27 C 1.52993 * 117.49549 * 136.25481 * 26 25 23 28 28 C 1.53003 * 117.49496 * 204.91224 * 26 25 23 29 29 H 1.09001 * 109.46927 * 300.24359 * 1 2 3 30 30 H 1.09003 * 109.47658 * 60.24466 * 1 2 3 31 31 H 1.09001 * 109.47478 * 180.24614 * 1 2 3 32 32 H 0.96993 * 120.00160 * 22.17696 * 6 4 2 33 33 H 1.09001 * 109.47457 * 299.99828 * 9 7 6 34 34 H 1.09005 * 109.47378 * 60.00080 * 9 7 6 35 35 H 0.97003 * 120.00080 * 179.97438 * 14 13 11 36 36 H 1.08997 * 110.71850 * 219.68656 * 19 4 2 37 37 H 1.08992 * 110.87393 * 96.47603 * 19 4 2 38 38 H 1.09003 * 110.66961 * 278.98269 * 20 19 4 39 39 H 1.08999 * 110.66602 * 155.84729 * 20 19 4 40 40 H 1.09003 * 109.46758 * 56.70762 * 22 21 2 41 41 H 1.08992 * 109.46832 * 296.71200 * 22 21 2 42 42 H 0.96999 * 120.00098 * 0.02562 * 25 23 22 43 43 H 1.08996 * 115.55045 * 350.58604 * 26 25 23 44 44 H 1.09003 * 117.49943 * 214.99938 * 27 26 25 45 45 H 1.08998 * 117.50584 * 0.02562 * 27 26 25 46 46 H 1.08997 * 117.50358 * 359.97438 * 28 26 25 47 47 H 1.09008 * 117.49417 * 144.97881 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0545 -0.7501 -1.2384 5 1 1.2237 -1.1399 -1.8265 6 7 2.8834 0.1380 -2.0574 7 6 3.0741 -0.1331 -3.3638 8 8 2.5592 -1.1119 -3.8615 9 6 3.9271 0.7800 -4.2061 10 16 3.9892 0.1527 -5.9028 11 6 5.0212 1.3741 -6.6430 12 1 5.4011 2.1922 -6.0490 13 6 5.3458 1.2849 -7.9896 14 7 4.8823 0.2881 -8.7137 15 14 6.4392 2.5801 -8.7745 16 1 7.7561 2.5980 -8.0885 17 1 6.6334 2.2593 -10.2114 18 1 5.7969 3.9130 -8.6479 19 6 2.9058 -1.9117 -0.6764 20 6 3.2682 -1.4185 0.7470 21 7 2.0339 -0.7205 1.1893 22 6 2.3212 0.2122 2.2873 23 6 2.7542 -0.5634 3.5047 24 8 2.7091 -1.7753 3.4994 25 7 3.1915 0.0900 4.5994 26 6 3.6118 -0.6639 5.7832 27 6 4.8967 -0.2189 6.4845 28 6 3.5373 0.0464 7.1363 29 1 -0.3633 0.5176 0.8878 30 1 -0.3634 0.5100 -0.8922 31 1 -0.3634 -1.0276 0.0044 32 1 3.2949 0.9210 -1.6595 33 1 3.4977 1.7818 -4.2051 34 1 4.9359 0.8167 -3.7948 35 1 5.1089 0.2260 -9.6549 36 1 3.8051 -2.0556 -1.2753 37 1 2.3241 -2.8321 -0.6293 38 1 4.1097 -0.7267 0.7119 39 1 3.4889 -2.2616 1.4016 40 1 1.4240 0.7851 2.5215 41 1 3.1184 0.8921 1.9871 42 1 3.2271 1.0593 4.6038 43 1 3.3936 -1.7316 5.7625 44 1 5.5238 -0.9938 6.9253 45 1 5.4290 0.6350 6.0655 46 1 3.1759 1.0747 7.1457 47 1 3.2697 -0.5540 8.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692340862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = -35.869310 kcal Electronic energy + Delta-G solvation = -26780.241205 eV Core-core repulsion = 22897.217402 eV Total energy + Delta-G solvation = -3883.023803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.64344 -39.72768 -38.35535 -37.34701 -34.24966 -33.31945 -32.43684 -31.58334 -31.48071 -29.09159 -26.63899 -25.56465 -25.14027 -22.94110 -22.64822 -21.71678 -20.99622 -20.60028 -19.93913 -17.91104 -17.54991 -17.16060 -16.40869 -16.29791 -15.85775 -15.77211 -15.08500 -14.81608 -14.71675 -14.68761 -14.53051 -14.05174 -13.84145 -13.31902 -13.27262 -13.05156 -12.97717 -12.58031 -12.34017 -12.20692 -12.14036 -11.92746 -11.87776 -11.62895 -11.35286 -11.30233 -11.05880 -11.05687 -11.04840 -10.91677 -10.77153 -10.14525 -9.83425 -9.41781 -9.24297 -9.07279 -8.91720 -8.74777 -8.24902 -6.50861 -6.22308 -3.93068 2.19753 2.47056 3.00082 3.07077 3.22406 3.26326 3.29238 3.38224 3.56920 3.78427 4.19526 4.20712 4.24111 4.26197 4.40279 4.44656 4.63060 4.71153 4.87200 4.89047 5.02239 5.07612 5.11178 5.12662 5.17652 5.26448 5.28162 5.40051 5.51752 5.52111 5.57420 5.60522 5.69052 5.86186 5.91451 6.00076 6.02738 6.06898 6.09229 6.11733 6.42169 6.54398 6.74750 7.03278 7.58082 7.66895 7.84074 8.33931 8.59773 9.22723 10.85008 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.001855 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.737324 B =15091.029848 C =15882.135762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.060 0.940 4 C 0.141 3.859 5 H 0.102 0.898 6 N -0.734 5.734 7 C 0.533 3.467 8 O -0.513 6.513 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.132 4.132 20 C 0.035 3.965 21 N -0.492 5.492 22 C 0.028 3.972 23 C 0.519 3.481 24 O -0.513 6.513 25 N -0.708 5.708 26 C 0.082 3.918 27 C -0.194 4.194 28 C -0.190 4.190 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.394 0.606 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.269 0.731 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.401 0.599 43 H 0.138 0.862 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 3.765 31.166 31.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.050 4.050 3 H 0.078 0.922 4 C 0.035 3.965 5 H 0.120 0.880 6 N -0.388 5.388 7 C 0.319 3.681 8 O -0.387 6.387 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.171 4.171 20 C -0.092 4.092 21 N -0.217 5.217 22 C -0.103 4.103 23 C 0.304 3.696 24 O -0.387 6.387 25 N -0.360 5.360 26 C -0.024 4.024 27 C -0.233 4.233 28 C -0.228 4.228 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.235 0.765 43 H 0.156 0.844 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.592 0.760 30.293 30.814 hybrid contribution 2.254 3.633 0.176 4.279 sum -3.338 4.393 30.469 30.964 Atomic orbital electron populations 1.21729 0.92756 1.03106 1.01579 1.22666 0.97178 0.96116 0.89043 0.92205 1.21746 0.94134 0.89957 0.90673 0.88028 1.46175 1.53421 1.29330 1.09923 1.20304 0.80645 0.85892 0.81236 1.90709 1.48117 1.28079 1.71783 1.23538 1.01259 1.01849 1.03803 1.85411 1.66190 1.36330 0.95238 1.22827 1.35609 1.12541 0.97557 0.91021 1.24989 0.96140 0.96313 0.96104 1.70007 1.42708 1.29640 1.07867 0.86229 0.80305 0.80883 0.78105 1.19960 1.20785 1.19961 1.22918 1.00878 0.98611 0.94716 1.23365 0.90056 0.99032 0.96720 1.64572 1.27771 1.24353 1.04972 1.22159 1.02087 0.94690 0.91395 1.20533 0.76628 0.88616 0.83774 1.90714 1.52041 1.13811 1.82090 1.45399 1.67097 1.09834 1.13685 1.21586 1.00007 0.97377 0.83476 1.23445 0.91423 1.04218 1.04211 1.23392 1.00713 1.02210 0.96517 0.92574 0.91833 0.91313 0.77186 0.89290 0.89331 0.92107 0.90173 0.89760 0.94094 0.88569 0.87532 0.91781 0.76526 0.84428 0.87928 0.88486 0.88465 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.32 37.16 0.35 -0.80 16 2 C 0.06 0.54 2.87 -66.65 -0.19 0.35 16 3 H 0.06 0.46 7.23 -51.93 -0.38 0.09 16 4 C 0.14 1.69 2.93 -66.57 -0.20 1.50 16 5 H 0.10 1.42 7.19 -51.93 -0.37 1.05 16 6 N -0.73 -9.53 5.08 -52.49 -0.27 -9.79 16 7 C 0.53 9.73 7.84 -10.99 -0.09 9.64 16 8 O -0.51 -11.49 15.56 5.56 0.09 -11.41 16 9 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 10 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 11 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 15 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C -0.13 -1.61 6.78 -24.87 -0.17 -1.77 16 20 C 0.04 0.38 5.78 -1.90 -0.01 0.37 16 21 N -0.49 -4.73 4.62 -224.01 -1.03 -5.77 16 22 C 0.03 0.20 5.18 -4.98 -0.03 0.17 16 23 C 0.52 4.54 7.51 -10.98 -0.08 4.45 16 24 O -0.51 -6.63 14.38 5.56 0.08 -6.55 16 25 N -0.71 -4.19 5.57 -53.81 -0.30 -4.49 16 26 C 0.08 0.50 6.43 -67.93 -0.44 0.07 16 27 C -0.19 -0.90 10.46 -26.70 -0.28 -1.18 16 28 C -0.19 -0.78 10.46 -26.69 -0.28 -1.06 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.39 3.97 8.28 -40.82 -0.34 3.64 16 33 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 34 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.41 7.91 -51.93 -0.41 0.00 16 39 H 0.10 1.18 6.85 -51.93 -0.36 0.82 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.34 7.99 -51.93 -0.41 -0.07 16 42 H 0.40 1.24 8.83 -40.82 -0.36 0.88 16 43 H 0.14 1.09 7.40 -51.93 -0.38 0.70 16 44 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.10 0.37 8.14 -51.92 -0.42 -0.06 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -36.20 401.99 -10.49 -46.70 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.63 Total: 2.15 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.99 Total: -4.02 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.87 Total: -45.42 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.17 Total: -17.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.20 -10.49 -46.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692340862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.827 kcal (2) G-P(sol) polarization free energy of solvation -36.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds