Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.06381 * 2 1 4 4 C 1.53996 * 109.91473 * 238.79897 * 2 1 3 5 5 H 1.09000 * 110.39302 * 358.38451 * 4 2 1 6 6 N 1.46506 * 110.30583 * 120.50139 * 4 2 1 7 7 C 1.34782 * 119.99735 * 202.16897 * 6 4 2 8 8 O 1.21276 * 120.00192 * 0.02562 * 7 6 4 9 9 C 1.50695 * 119.99669 * 180.02562 * 7 6 4 10 10 S 1.81000 * 109.47038 * 180.02562 * 9 7 6 11 11 C 1.76203 * 99.99939 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00128 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99790 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00093 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99930 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47090 * 60.00456 * 15 13 11 17 17 H 1.48502 * 109.47139 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47318 * 300.00273 * 15 13 11 19 19 C 1.54595 * 105.13968 * 239.41988 * 4 2 1 20 20 C 1.54937 * 102.92154 * 338.04205 * 19 4 2 21 21 N 1.47897 * 109.92005 * 121.20757 * 2 1 3 22 22 C 1.46901 * 111.00300 * 265.19585 * 21 2 1 23 23 C 1.50697 * 109.46838 * 176.70743 * 22 21 2 24 24 O 1.21274 * 120.00513 * 353.75530 * 23 22 21 25 25 N 1.34783 * 119.99391 * 173.75974 * 23 22 21 26 26 C 1.46503 * 119.99645 * 179.97438 * 25 23 22 27 27 C 1.52993 * 117.49549 * 136.25481 * 26 25 23 28 28 C 1.53003 * 117.49496 * 204.91224 * 26 25 23 29 29 H 1.09001 * 109.46927 * 300.24359 * 1 2 3 30 30 H 1.09003 * 109.47658 * 60.24466 * 1 2 3 31 31 H 1.09001 * 109.47478 * 180.24614 * 1 2 3 32 32 H 0.96993 * 120.00160 * 22.17696 * 6 4 2 33 33 H 1.09001 * 109.47457 * 299.99828 * 9 7 6 34 34 H 1.09005 * 109.47378 * 60.00080 * 9 7 6 35 35 H 0.97003 * 120.00080 * 179.97438 * 14 13 11 36 36 H 1.08997 * 110.71850 * 219.68656 * 19 4 2 37 37 H 1.08992 * 110.87393 * 96.47603 * 19 4 2 38 38 H 1.09003 * 110.66961 * 278.98269 * 20 19 4 39 39 H 1.08999 * 110.66602 * 155.84729 * 20 19 4 40 40 H 1.09003 * 109.46758 * 56.70762 * 22 21 2 41 41 H 1.08992 * 109.46832 * 296.71200 * 22 21 2 42 42 H 0.96999 * 120.00098 * 0.02562 * 25 23 22 43 43 H 1.08996 * 115.55045 * 350.58604 * 26 25 23 44 44 H 1.09003 * 117.49943 * 214.99938 * 27 26 25 45 45 H 1.08998 * 117.50584 * 0.02562 * 27 26 25 46 46 H 1.08997 * 117.50358 * 359.97438 * 28 26 25 47 47 H 1.09008 * 117.49417 * 144.97881 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0545 -0.7501 -1.2384 5 1 1.2237 -1.1399 -1.8265 6 7 2.8834 0.1380 -2.0574 7 6 3.0741 -0.1331 -3.3638 8 8 2.5592 -1.1119 -3.8615 9 6 3.9271 0.7800 -4.2061 10 16 3.9892 0.1527 -5.9028 11 6 5.0212 1.3741 -6.6430 12 1 5.4011 2.1922 -6.0490 13 6 5.3458 1.2849 -7.9896 14 7 4.8823 0.2881 -8.7137 15 14 6.4392 2.5801 -8.7745 16 1 7.7561 2.5980 -8.0885 17 1 6.6334 2.2593 -10.2114 18 1 5.7969 3.9130 -8.6479 19 6 2.9058 -1.9117 -0.6764 20 6 3.2682 -1.4185 0.7470 21 7 2.0339 -0.7205 1.1893 22 6 2.3212 0.2122 2.2873 23 6 2.7542 -0.5634 3.5047 24 8 2.7091 -1.7753 3.4994 25 7 3.1915 0.0900 4.5994 26 6 3.6118 -0.6639 5.7832 27 6 4.8967 -0.2189 6.4845 28 6 3.5373 0.0464 7.1363 29 1 -0.3633 0.5176 0.8878 30 1 -0.3634 0.5100 -0.8922 31 1 -0.3634 -1.0276 0.0044 32 1 3.2949 0.9210 -1.6595 33 1 3.4977 1.7818 -4.2051 34 1 4.9359 0.8167 -3.7948 35 1 5.1089 0.2260 -9.6549 36 1 3.8051 -2.0556 -1.2753 37 1 2.3241 -2.8321 -0.6293 38 1 4.1097 -0.7267 0.7119 39 1 3.4889 -2.2616 1.4016 40 1 1.4240 0.7851 2.5215 41 1 3.1184 0.8921 1.9871 42 1 3.2271 1.0593 4.6038 43 1 3.3936 -1.7316 5.7625 44 1 5.5238 -0.9938 6.9253 45 1 5.4290 0.6350 6.0655 46 1 3.1759 1.0747 7.1457 47 1 3.2697 -0.5540 8.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692340862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = -63.815302 kcal Electronic energy + Delta-G solvation = -26781.453034 eV Core-core repulsion = 22897.217402 eV Total energy + Delta-G solvation = -3884.235632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48658 -40.67701 -39.42183 -37.92187 -35.39853 -34.57663 -33.92107 -32.54644 -32.33020 -30.47653 -27.71999 -27.33241 -26.09924 -23.31125 -23.25019 -22.60411 -21.68010 -21.51611 -21.08667 -19.78012 -18.35677 -17.86031 -17.74424 -17.19910 -16.87221 -16.72581 -16.50386 -16.21450 -16.01144 -15.53248 -15.34306 -15.19778 -14.76529 -14.64246 -14.44095 -13.92654 -13.84266 -13.64038 -13.59356 -13.16517 -13.02380 -12.87667 -12.81084 -12.65009 -12.53488 -12.44977 -12.41355 -12.31290 -12.13638 -11.80152 -11.70813 -11.46226 -11.12323 -10.95272 -10.83537 -10.26799 -10.12532 -9.73828 -9.45337 -8.66056 -8.33839 -6.12036 1.26720 1.44174 1.46958 1.56289 1.59396 1.60714 1.95065 2.24321 2.29010 2.94578 2.99517 3.00206 3.32974 3.41419 3.57938 3.80770 3.86395 3.96888 4.02394 4.06142 4.08156 4.13323 4.25521 4.30601 4.33105 4.41549 4.43976 4.51004 4.70638 4.77014 4.79789 4.83947 4.89911 5.00583 5.02833 5.05833 5.07286 5.20756 5.37239 5.41986 5.42992 5.53981 5.79368 5.91534 6.20061 6.48311 6.57294 7.07251 7.24429 7.29521 8.75029 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.001855 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.737324 B =15091.029848 C =15882.135762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.071 3.929 3 H 0.088 0.912 4 C 0.139 3.861 5 H 0.079 0.921 6 N -0.705 5.705 7 C 0.536 3.464 8 O -0.563 6.563 9 C -0.129 4.129 10 S -0.152 6.152 11 C -0.547 4.547 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.261 1.261 19 C -0.132 4.132 20 C 0.048 3.952 21 N -0.506 5.506 22 C 0.029 3.971 23 C 0.514 3.486 24 O -0.566 6.566 25 N -0.693 5.693 26 C 0.055 3.945 27 C -0.189 4.189 28 C -0.172 4.172 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.414 0.586 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.271 0.729 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.417 0.583 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 7.496 33.453 34.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.038 4.038 3 H 0.106 0.894 4 C 0.034 3.966 5 H 0.097 0.903 6 N -0.359 5.359 7 C 0.322 3.678 8 O -0.440 6.440 9 C -0.280 4.280 10 S 0.075 5.925 11 C -0.695 4.695 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.186 1.186 19 C -0.171 4.171 20 C -0.079 4.079 21 N -0.232 5.232 22 C -0.102 4.102 23 C 0.301 3.699 24 O -0.443 6.443 25 N -0.345 5.345 26 C -0.051 4.051 27 C -0.227 4.227 28 C -0.210 4.210 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.252 0.748 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.151 0.849 41 H 0.110 0.890 42 H 0.254 0.746 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.131 0.869 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.803 4.566 32.666 33.332 hybrid contribution 1.975 2.437 -0.350 3.156 sum -2.828 7.003 32.317 33.187 Atomic orbital electron populations 1.21720 0.92224 1.02467 1.02586 1.22586 0.97432 0.96729 0.87045 0.89411 1.21819 0.93171 0.90244 0.91407 0.90275 1.45855 1.52377 1.29673 1.08032 1.20069 0.80131 0.84951 0.82626 1.90703 1.50176 1.30050 1.73096 1.23370 1.03098 1.02640 0.98889 1.85623 1.66770 1.38469 1.01642 1.23178 1.35493 1.12615 0.98186 0.89818 1.26132 0.97624 0.98687 0.96733 1.70182 1.44405 1.31965 1.08224 0.85009 0.78295 0.77831 0.76892 1.18673 1.20504 1.18567 1.22837 0.99962 0.98523 0.95820 1.23152 0.91063 0.98907 0.94803 1.64497 1.27322 1.25676 1.05677 1.22288 1.04239 0.94160 0.89491 1.20931 0.76107 0.88128 0.84739 1.90705 1.54526 1.16053 1.83045 1.45254 1.65755 1.10613 1.12846 1.21556 1.02145 0.96691 0.84747 1.23493 0.91328 1.04348 1.03541 1.23461 0.99780 1.02695 0.95105 0.90510 0.91797 0.92903 0.74814 0.86984 0.87285 0.92025 0.91927 0.90851 0.92785 0.90516 0.84924 0.88987 0.74579 0.86996 0.87893 0.87584 0.86921 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.32 71.98 0.67 -1.30 16 2 C 0.07 1.10 2.87 45.06 0.13 1.23 16 3 H 0.09 0.92 7.23 -2.39 -0.02 0.91 16 4 C 0.14 3.23 2.93 45.87 0.13 3.36 16 5 H 0.08 2.26 7.19 -2.39 -0.02 2.24 16 6 N -0.71 -16.96 5.08 -438.36 -2.23 -19.19 16 7 C 0.54 19.29 7.84 87.65 0.69 19.98 16 8 O -0.56 -25.95 15.56 -3.02 -0.05 -26.00 16 9 C -0.13 -4.95 6.16 71.23 0.44 -4.52 16 10 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 11 C -0.55 -30.96 9.50 67.96 0.65 -30.31 16 12 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 13 C 0.01 0.74 5.49 84.86 0.47 1.20 16 14 N -0.91 -55.97 13.22 21.65 0.29 -55.69 16 15 Si 1.00 43.21 29.55 68.60 2.03 45.24 16 16 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 19 C -0.13 -3.27 6.78 31.80 0.22 -3.05 16 20 C 0.05 0.99 5.78 86.65 0.50 1.49 16 21 N -0.51 -8.73 4.62 -862.62 -3.99 -12.72 16 22 C 0.03 0.31 5.18 85.56 0.44 0.75 16 23 C 0.51 8.20 7.51 87.66 0.66 8.86 16 24 O -0.57 -14.81 14.38 -3.01 -0.04 -14.85 16 25 N -0.69 -6.78 5.57 -442.54 -2.46 -9.25 16 26 C 0.05 0.63 6.43 44.99 0.29 0.91 16 27 C -0.19 -1.42 10.46 30.62 0.32 -1.10 16 28 C -0.17 -1.04 10.46 30.62 0.32 -0.72 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.41 6.80 8.28 -92.71 -0.77 6.03 16 33 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 34 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.06 1.75 8.05 -2.39 -0.02 1.73 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 38 H 0.05 0.95 7.91 -2.39 -0.02 0.94 16 39 H 0.08 1.92 6.85 -2.39 -0.02 1.91 16 40 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.52 7.99 -2.39 -0.02 0.50 16 42 H 0.42 1.20 8.83 -92.71 -0.82 0.38 16 43 H 0.11 1.88 7.40 -2.39 -0.02 1.86 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -83.43 401.99 -2.29 -85.73 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.60 Total: 19.50 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.92 Total: -3.21 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -8.39 Total: -96.85 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.09 Total: -40.85 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -83.43 -2.29 -85.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692340862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.910 kcal (2) G-P(sol) polarization free energy of solvation -83.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds