Wall clock time and date at job start Sat Apr 11 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00477 * 2 1 4 4 N 1.46494 * 109.47400 * 124.99742 * 3 2 1 5 5 C 1.34773 * 120.00389 * 180.02562 * 4 3 2 6 6 O 1.21293 * 119.99701 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00656 * 179.97438 * 5 4 3 8 8 N 1.46901 * 109.47478 * 179.97438 * 7 5 4 9 9 C 1.46903 * 111.00107 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.63997 * 323.31597 * 9 8 7 11 11 C 1.54317 * 110.71957 * 86.45347 * 9 8 7 12 12 N 1.47024 * 107.27283 * 140.73250 * 11 9 8 13 13 C 1.34776 * 125.65235 * 181.02176 * 12 11 9 14 14 O 1.21282 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00035 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47349 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00068 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00457 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00373 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99508 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46883 * 90.00251 * 21 19 17 23 23 H 1.48506 * 109.46691 * 209.99932 * 21 19 17 24 24 H 1.48496 * 109.47312 * 329.99980 * 21 19 17 25 25 C 1.47427 * 108.69878 * 1.29168 * 12 11 9 26 26 C 1.55131 * 104.72398 * 335.54845 * 25 12 11 27 27 H 1.08995 * 110.93927 * 155.28658 * 26 25 12 28 28 C 1.53000 * 111.19541 * 279.19676 * 26 25 12 29 29 H 1.08008 * 119.99876 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00345 * 180.02562 * 1 2 3 31 31 H 1.08008 * 119.99876 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46996 * 4.99540 * 3 2 1 33 33 H 1.09002 * 109.46920 * 244.99568 * 3 2 1 34 34 H 0.97003 * 119.99927 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46856 * 60.00162 * 7 5 4 36 36 H 1.08995 * 109.47460 * 300.00155 * 7 5 4 37 37 H 1.00899 * 110.99327 * 56.05203 * 8 7 5 38 38 H 1.09010 * 109.88434 * 21.31875 * 11 9 8 39 39 H 1.08998 * 109.88877 * 260.15690 * 11 9 8 40 40 H 1.09001 * 109.47122 * 60.00223 * 15 13 12 41 41 H 1.09004 * 109.47371 * 300.00514 * 15 13 12 42 42 H 0.97001 * 120.00241 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.37182 * 94.48075 * 25 12 11 44 44 H 1.09002 * 110.36811 * 216.80257 * 25 12 11 45 45 H 1.08995 * 109.47137 * 172.18548 * 28 26 25 46 46 H 1.08999 * 109.46733 * 292.18103 * 28 26 25 47 47 H 1.08997 * 109.46902 * 52.17980 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7783 2.4089 1.3335 6 8 3.7146 3.3559 0.5782 7 6 4.7348 2.4368 2.4976 8 7 5.4695 3.7089 2.4975 9 6 6.4140 3.7715 3.6209 10 1 5.9925 3.2921 4.5044 11 6 7.7611 3.1231 3.2384 12 7 8.8256 3.9476 3.8288 13 6 10.1495 3.7263 3.7071 14 8 10.5493 2.7784 3.0648 15 6 11.1330 4.6573 4.3681 16 16 12.8194 4.0983 4.0220 17 6 13.7339 5.3299 4.8887 18 1 13.2150 6.1163 5.4168 19 6 15.1214 5.2901 4.8921 20 7 15.8046 6.2104 5.5391 21 14 16.0189 3.9304 3.9781 22 1 16.2822 4.3626 2.5820 23 1 17.3072 3.6434 4.6588 24 1 15.1809 2.7045 3.9671 25 6 8.2049 5.0529 4.5815 26 6 6.8099 5.2397 3.9291 27 1 6.1098 5.6942 4.6300 28 6 6.9064 6.0630 2.6432 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 3.0445 0.5747 1.7356 35 1 5.4400 1.6104 2.4083 36 1 4.1768 2.3392 3.4288 37 1 4.8347 4.4929 2.5143 38 1 7.8675 3.1016 2.1537 39 1 7.8119 2.1103 3.6380 40 1 10.9643 4.6591 5.4450 41 1 10.9976 5.6659 3.9775 42 1 16.7742 6.1825 5.5417 43 1 8.1017 4.7850 5.6330 44 1 8.7967 5.9623 4.4773 45 1 5.9413 6.0604 2.1367 46 1 7.1853 7.0879 2.8881 47 1 7.6615 5.6275 1.9887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717274098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:04 Heat of formation + Delta-G solvation = -69.662715 kcal Electronic energy + Delta-G solvation = -26522.185098 eV Core-core repulsion = 22637.695903 eV Total energy + Delta-G solvation = -3884.489195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33565 -40.66575 -39.10867 -36.85565 -35.82856 -34.67727 -33.79117 -33.14054 -31.55581 -29.62672 -28.00825 -27.72094 -27.61702 -25.80870 -23.47508 -21.71110 -21.06007 -20.73088 -20.62873 -19.64500 -18.29049 -17.92533 -17.65568 -17.38044 -17.13320 -16.75121 -16.45415 -16.29195 -15.94260 -15.70102 -15.26185 -15.08268 -14.90684 -14.73379 -14.32904 -14.25752 -14.06507 -13.93090 -13.56758 -13.37251 -13.28666 -13.23390 -13.10738 -13.02116 -12.95549 -12.66060 -12.08121 -12.05045 -11.87513 -11.83958 -11.61215 -11.17590 -11.06217 -11.00921 -10.54512 -10.51606 -10.04093 -9.70141 -9.44838 -9.01374 -8.51841 -6.23105 0.95474 1.16427 1.31101 1.44857 1.51937 1.52951 1.64050 2.02436 2.24755 2.30202 2.67982 2.86446 3.19402 3.34839 3.48520 3.77295 3.82705 3.91962 4.04518 4.14224 4.17497 4.24992 4.27986 4.39696 4.41549 4.47076 4.56931 4.60957 4.65703 4.73477 4.76926 4.84327 4.91553 4.99506 5.07131 5.17438 5.33276 5.36908 5.50373 5.64051 5.70538 5.76610 5.91013 6.10829 6.29770 6.38520 6.58753 6.93382 7.06525 7.26863 8.60481 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025351 B = 0.001788 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.209822 B =15653.513586 C =16367.540614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.182 4.182 3 C 0.146 3.854 4 N -0.718 5.718 5 C 0.508 3.492 6 O -0.574 6.574 7 C 0.043 3.957 8 N -0.677 5.677 9 C 0.094 3.906 10 H 0.095 0.905 11 C 0.115 3.885 12 N -0.611 5.611 13 C 0.546 3.454 14 O -0.567 6.567 15 C -0.101 4.101 16 S -0.177 6.177 17 C -0.528 4.528 18 H 0.063 0.937 19 C 0.049 3.951 20 N -0.915 5.915 21 Si 0.912 3.088 22 H -0.264 1.264 23 H -0.257 1.257 24 H -0.238 1.238 25 C 0.093 3.907 26 C -0.093 4.093 27 H 0.127 0.873 28 C -0.134 4.134 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.417 0.583 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.359 0.641 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.277 0.723 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.360 -9.892 -3.210 36.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.200 4.200 3 C 0.023 3.977 4 N -0.372 5.372 5 C 0.295 3.705 6 O -0.453 6.453 7 C -0.089 4.089 8 N -0.312 5.312 9 C -0.016 4.016 10 H 0.113 0.887 11 C -0.008 4.008 12 N -0.345 5.345 13 C 0.334 3.666 14 O -0.446 6.446 15 C -0.252 4.252 16 S 0.050 5.950 17 C -0.676 4.676 18 H 0.081 0.919 19 C -0.157 4.157 20 N -0.553 5.553 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.181 1.181 24 H -0.162 1.162 25 C -0.030 4.030 26 C -0.112 4.112 27 H 0.145 0.855 28 C -0.191 4.191 29 H 0.118 0.882 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.254 0.746 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.181 0.819 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -34.131 -10.747 -5.096 36.144 hybrid contribution 0.029 0.738 1.171 1.385 sum -34.102 -10.009 -3.925 35.756 Atomic orbital electron populations 1.24169 0.95673 1.03218 0.96767 1.22948 0.96371 0.97441 1.03253 1.20361 0.91549 0.96503 0.89310 1.45904 1.40323 1.20057 1.30914 1.21065 0.80711 0.82051 0.86635 1.90721 1.68858 1.37207 1.48477 1.21940 0.95969 0.94978 0.96000 1.59956 1.21897 1.04210 1.45177 1.22474 0.90631 0.96216 0.92292 0.88732 1.22013 0.86338 0.94231 0.98225 1.48284 1.03609 1.30247 1.52398 1.19664 0.82086 0.84854 0.80033 1.90682 1.78632 1.32408 1.42851 1.23192 0.94979 1.02142 1.04836 1.84736 0.99477 1.40130 1.70704 1.22434 0.94671 1.13351 1.37135 0.91866 1.25517 0.97275 0.97833 0.95077 1.70006 1.08226 1.35015 1.42068 0.85898 0.79874 0.81231 0.79562 1.18834 1.18100 1.16186 1.22817 0.94034 0.89595 0.96509 1.22570 0.95772 0.94414 0.98439 0.85484 1.21578 1.02065 0.99107 0.96349 0.88199 0.86356 0.85432 0.91971 0.92243 0.74625 0.87076 0.88600 0.81903 0.92798 0.91751 0.86870 0.87403 0.91332 0.88574 0.90029 0.91202 0.91907 0.95131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 14.32 67.79 0.97 0.16 16 2 C -0.18 -1.15 9.63 25.65 0.25 -0.91 16 3 C 0.15 1.63 6.11 85.63 0.52 2.15 16 4 N -0.72 -7.03 5.55 -466.80 -2.59 -9.62 16 5 C 0.51 7.82 7.87 87.66 0.69 8.51 16 6 O -0.57 -14.47 16.20 -3.07 -0.05 -14.52 16 7 C 0.04 0.43 6.02 85.56 0.52 0.94 16 8 N -0.68 -9.61 5.13 -489.46 -2.51 -12.12 16 9 C 0.09 1.23 3.02 46.10 0.14 1.36 16 10 H 0.10 0.74 7.89 -2.39 -0.02 0.72 16 11 C 0.12 2.58 6.23 86.73 0.54 3.12 16 12 N -0.61 -16.29 3.31 -811.34 -2.69 -18.98 16 13 C 0.55 20.40 7.87 87.66 0.69 21.09 16 14 O -0.57 -26.06 16.19 -3.04 -0.05 -26.11 16 15 C -0.10 -3.99 5.16 71.24 0.37 -3.62 16 16 S -0.18 -9.21 18.55 -56.49 -1.05 -10.26 16 17 C -0.53 -31.15 10.04 67.95 0.68 -30.47 16 18 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 19 C 0.05 2.88 5.50 84.86 0.47 3.34 16 20 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 21 Si 0.91 45.57 27.74 68.60 1.90 47.47 16 22 H -0.26 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 25 C 0.09 1.64 6.17 86.93 0.54 2.17 16 26 C -0.09 -1.17 3.47 -9.32 -0.03 -1.21 16 27 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 28 C -0.13 -2.25 8.77 71.98 0.63 -1.62 16 29 H 0.10 0.51 7.84 -2.91 -0.02 0.49 16 30 H 0.12 0.28 8.06 -2.91 -0.02 0.25 16 31 H 0.13 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.06 0.80 7.79 -2.39 -0.02 0.78 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.42 1.46 8.46 -92.71 -0.78 0.68 16 35 H 0.11 0.99 8.13 -2.39 -0.02 0.97 16 36 H 0.10 0.34 8.09 -2.39 -0.02 0.32 16 37 H 0.36 4.93 7.00 -89.69 -0.63 4.30 16 38 H 0.05 1.51 8.03 -2.38 -0.02 1.49 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 41 H 0.11 4.00 7.85 -2.39 -0.02 3.99 16 42 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.52 7.40 -2.39 -0.02 1.50 16 45 H 0.07 1.12 6.70 -2.39 -0.02 1.10 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.03 0.71 7.91 -2.39 -0.02 0.69 16 Total: -1.00 -83.31 402.16 -0.24 -83.55 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -0.48 Total: 11.22 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.97 Total: 5.03 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -7.48 Total: -96.39 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.10 Total: -40.63 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.05 Total: -10.26 kcal Total: -83.31 -0.24 -83.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717274098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.890 kcal (2) G-P(sol) polarization free energy of solvation -83.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds