Wall clock time and date at job start Sat Apr 11 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99695 * 2 1 4 4 N 1.46494 * 109.46924 * 124.99800 * 3 2 1 5 5 C 1.34778 * 119.99880 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00034 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99823 * 179.97438 * 5 4 3 8 8 N 1.46909 * 109.46807 * 180.02562 * 7 5 4 9 9 C 1.46903 * 110.99643 * 180.02562 * 8 7 5 10 10 H 1.08999 * 110.88817 * 31.11270 * 9 8 7 11 11 C 1.55132 * 111.18918 * 267.18423 * 9 8 7 12 12 N 1.47429 * 104.72037 * 279.19351 * 11 9 8 13 13 C 1.34776 * 125.64380 * 155.81724 * 12 11 9 14 14 O 1.21280 * 120.00458 * 359.71547 * 13 12 11 15 15 C 1.50702 * 119.99564 * 179.71782 * 13 12 11 16 16 S 1.81008 * 109.46925 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99767 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00286 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99642 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99700 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99693 * 21 19 17 25 25 C 1.47021 * 108.70411 * 335.55463 * 12 11 9 26 26 C 1.54323 * 107.27097 * 1.28716 * 25 12 11 27 27 H 1.09000 * 110.71957 * 263.65776 * 26 25 12 28 28 C 1.52998 * 110.71807 * 140.55956 * 26 25 12 29 29 H 1.08001 * 120.00021 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99907 * 0.02562 * 1 2 3 31 31 H 1.07991 * 119.99989 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47124 * 4.99300 * 3 2 1 33 33 H 1.08999 * 109.46512 * 244.99715 * 3 2 1 34 34 H 0.96999 * 120.00603 * 359.97438 * 4 3 2 35 35 H 1.09004 * 109.46901 * 60.00869 * 7 5 4 36 36 H 1.08999 * 109.47643 * 300.00152 * 7 5 4 37 37 H 1.00893 * 111.00221 * 56.04760 * 8 7 5 38 38 H 1.08997 * 110.49741 * 160.35553 * 11 9 8 39 39 H 1.09001 * 110.34145 * 37.95455 * 11 9 8 40 40 H 1.08998 * 109.47573 * 60.00437 * 15 13 12 41 41 H 1.09000 * 109.46955 * 299.99406 * 15 13 12 42 42 H 0.97004 * 120.00251 * 0.02562 * 20 19 17 43 43 H 1.09002 * 109.88117 * 120.70750 * 25 12 11 44 44 H 1.09003 * 109.87862 * 241.71347 * 25 12 11 45 45 H 1.08994 * 109.47714 * 61.45298 * 28 26 25 46 46 H 1.09010 * 109.46725 * 181.45576 * 28 26 25 47 47 H 1.09001 * 109.46858 * 301.44688 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 3.7788 2.4088 1.3329 6 8 3.7150 3.3556 0.5778 7 6 4.7353 2.4366 2.4971 8 7 5.4699 3.7088 2.4971 9 6 6.4143 3.7714 3.6205 10 1 6.7856 2.7779 3.8719 11 6 5.7705 4.4518 4.8571 12 7 5.8764 5.8973 4.5869 13 6 5.0853 6.8543 5.1111 14 8 4.1912 6.5521 5.8728 15 6 5.3118 8.2999 4.7507 16 16 4.0984 9.3330 5.6090 17 6 4.5817 10.9231 5.0236 18 1 5.4114 11.0172 4.3388 19 6 3.8959 12.0548 5.4427 20 7 2.8843 11.9401 6.2770 21 14 4.4078 13.7405 4.8216 22 1 5.5640 13.5986 3.9005 23 1 4.7943 14.5957 5.9725 24 1 3.2723 14.3674 4.0984 25 6 6.9917 6.1224 3.6558 26 6 7.5852 4.7406 3.3093 27 1 8.4477 4.5225 3.9391 28 6 7.9667 4.6712 1.8292 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1317 0.0894 33 1 2.6212 1.4026 -0.9314 34 1 3.0445 0.5749 1.7356 35 1 5.4401 1.6098 2.4082 36 1 4.1772 2.3398 3.4284 37 1 4.8351 4.4929 2.5138 38 1 6.3188 4.1942 5.7632 39 1 4.7246 4.1587 4.9492 40 1 5.2012 8.4276 3.6739 41 1 6.3171 8.5959 5.0504 42 1 2.6183 11.0647 6.5993 43 1 6.6266 6.6067 2.7502 44 1 7.7499 6.7459 4.1296 45 1 8.7277 5.4213 1.6145 46 1 8.3590 3.6800 1.6013 47 1 7.0851 4.8624 1.2175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717274099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:07 Heat of formation + Delta-G solvation = -49.593628 kcal Electronic energy + Delta-G solvation = -26951.390916 eV Core-core repulsion = 23067.771982 eV Total energy + Delta-G solvation = -3883.618934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.42072 -39.77716 -37.90207 -36.23259 -34.67332 -33.21272 -32.55874 -32.49474 -30.40143 -28.65381 -27.17478 -26.32782 -25.11529 -24.76972 -22.69521 -21.10047 -20.41338 -20.10110 -19.41609 -18.23390 -17.57381 -17.02934 -16.65415 -16.29978 -16.18035 -15.76651 -15.19578 -14.84769 -14.55144 -14.35778 -14.03943 -13.83926 -13.81917 -13.68960 -13.41473 -13.29642 -13.03572 -12.72254 -12.55899 -12.42817 -12.35313 -12.03391 -11.90023 -11.78898 -11.66855 -11.43146 -11.01364 -10.95908 -10.88021 -10.41631 -10.18541 -9.95205 -9.56616 -9.51438 -9.41791 -8.99068 -8.91131 -8.45240 -8.19855 -6.65113 -6.60371 -3.97879 1.55424 2.35527 2.81209 2.83633 2.96639 3.35230 3.42448 3.47313 3.57301 3.82435 4.21671 4.25559 4.25938 4.29404 4.47032 4.56792 4.72070 4.85117 4.88587 4.98963 5.06587 5.08260 5.15179 5.24434 5.27238 5.30387 5.35030 5.40866 5.42814 5.54146 5.60646 5.69729 5.84298 5.88311 5.92871 5.94141 6.00034 6.05847 6.17616 6.30584 6.35061 6.56247 6.95762 7.14305 7.58533 7.91616 7.96025 8.45524 8.52351 9.29281 10.83739 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.002296 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.676214 B =12194.841934 C =13480.315268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.732 5.732 5 C 0.511 3.489 6 O -0.520 6.520 7 C 0.040 3.960 8 N -0.656 5.656 9 C 0.078 3.922 10 H 0.100 0.900 11 C 0.078 3.922 12 N -0.624 5.624 13 C 0.548 3.452 14 O -0.519 6.519 15 C -0.123 4.123 16 S -0.118 6.118 17 C -0.605 4.605 18 H 0.067 0.933 19 C 0.034 3.966 20 N -0.886 5.886 21 Si 1.090 2.910 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.102 3.898 26 C -0.090 4.090 27 H 0.087 0.913 28 C -0.130 4.130 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.401 0.599 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.359 0.641 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.278 0.722 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 -27.971 -11.153 30.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.198 4.198 3 C 0.024 3.976 4 N -0.386 5.386 5 C 0.296 3.704 6 O -0.394 6.394 7 C -0.093 4.093 8 N -0.289 5.289 9 C -0.034 4.034 10 H 0.118 0.882 11 C -0.047 4.047 12 N -0.361 5.361 13 C 0.336 3.664 14 O -0.393 6.393 15 C -0.274 4.274 16 S 0.108 5.892 17 C -0.753 4.753 18 H 0.085 0.915 19 C -0.176 4.176 20 N -0.520 5.520 21 Si 0.917 3.083 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.021 4.021 26 C -0.110 4.110 27 H 0.105 0.895 28 C -0.187 4.187 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.235 0.765 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.180 0.820 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.339 -26.235 -10.909 28.910 hybrid contribution 0.930 -1.524 -0.010 1.786 sum 6.270 -27.759 -10.919 30.482 Atomic orbital electron populations 1.24028 0.95832 1.02586 0.97680 1.22988 0.96245 0.98015 1.02506 1.20397 0.91828 0.95623 0.89787 1.45958 1.41356 1.20232 1.31078 1.20623 0.80785 0.82330 0.86635 1.90756 1.67136 1.34957 1.46556 1.21849 0.96230 0.95347 0.95827 1.60194 1.21707 1.03600 1.43374 1.22856 0.93349 0.99194 0.87970 0.88223 1.22915 1.01740 0.81611 0.98424 1.48453 1.33563 1.06251 1.47861 1.20016 0.80377 0.86473 0.79521 1.90703 1.31311 1.82556 1.34763 1.23283 1.05507 0.93596 1.05055 1.84796 1.41410 1.01454 1.61555 1.23755 1.23214 0.92098 1.36266 0.91502 1.26066 0.93579 1.03408 0.94540 1.70735 1.24788 1.28092 1.28395 0.83246 0.75688 0.73419 0.75985 1.21364 1.20905 1.20867 1.22171 0.88831 0.97695 0.93395 1.22246 0.96609 0.93235 0.98891 0.89500 1.21567 1.01968 1.01148 0.94043 0.87814 0.88032 0.86699 0.90988 0.90600 0.76541 0.87837 0.92006 0.82032 0.91047 0.90759 0.88942 0.89054 0.90951 0.90841 0.91371 0.93223 0.92697 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 14.32 29.01 0.42 -0.37 16 2 C -0.18 -0.89 9.63 -36.02 -0.35 -1.24 16 3 C 0.15 1.05 6.11 -5.19 -0.03 1.02 16 4 N -0.73 -5.00 5.55 -61.48 -0.34 -5.34 16 5 C 0.51 5.00 7.87 -10.98 -0.09 4.91 16 6 O -0.52 -7.57 16.20 5.56 0.09 -7.48 16 7 C 0.04 0.29 6.03 -4.97 -0.03 0.26 16 8 N -0.66 -6.27 4.55 -105.59 -0.48 -6.75 16 9 C 0.08 0.64 3.13 -65.44 -0.21 0.43 16 10 H 0.10 0.58 7.83 -51.93 -0.41 0.17 16 11 C 0.08 0.88 6.35 -2.41 -0.02 0.87 16 12 N -0.62 -9.01 3.26 -170.38 -0.56 -9.57 16 13 C 0.55 10.80 7.87 -10.98 -0.09 10.72 16 14 O -0.52 -12.18 16.12 5.56 0.09 -12.09 16 15 C -0.12 -2.64 5.35 36.01 0.19 -2.44 16 16 S -0.12 -3.29 19.60 -107.50 -2.11 -5.39 16 17 C -0.61 -17.85 9.50 30.94 0.29 -17.55 16 18 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 19 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 20 N -0.89 -28.03 13.67 55.49 0.76 -27.27 16 21 Si 1.09 25.57 29.92 -169.99 -5.09 20.48 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.10 1.16 6.07 -3.06 -0.02 1.14 16 26 C -0.09 -0.76 3.46 -88.79 -0.31 -1.06 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 C -0.13 -1.07 8.81 37.16 0.33 -0.75 16 29 H 0.10 0.36 8.06 -52.49 -0.42 -0.06 16 30 H 0.10 0.52 7.84 -52.49 -0.41 0.10 16 31 H 0.12 0.41 8.06 -52.49 -0.42 -0.01 16 32 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 1.54 8.46 -40.82 -0.35 1.20 16 35 H 0.10 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.36 4.48 8.10 -39.30 -0.32 4.17 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 40 H 0.09 1.88 8.14 -51.92 -0.42 1.46 16 41 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 42 H 0.28 8.99 7.13 -40.82 -0.29 8.70 16 43 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 47 H 0.08 0.79 7.21 -51.93 -0.37 0.41 16 LS Contribution 405.67 15.07 6.11 6.11 Total: -1.00 -38.05 405.67 -9.16 -47.22 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.65 Total: 3.23 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 0.01 Total: -3.14 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.62 Total: -48.94 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.18 Total: -19.57 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.48 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.11 Total: -5.39 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -38.05 -9.16 -47.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717274099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.376 kcal (2) G-P(sol) polarization free energy of solvation -38.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds