Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99590 * 2 1 4 4 C 1.54314 * 109.98490 * 238.97491 * 2 1 3 5 5 H 1.08995 * 111.07681 * 144.55947 * 4 2 1 6 6 N 1.46904 * 110.59333 * 21.30369 * 4 2 1 7 7 C 1.46894 * 110.99974 * 160.19527 * 6 4 2 8 8 C 1.50708 * 109.46998 * 180.02562 * 7 6 4 9 9 O 1.21278 * 119.99790 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99973 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99961 * 179.97438 * 10 8 7 12 12 C 1.53007 * 117.50068 * 223.74645 * 11 10 8 13 13 C 1.53005 * 117.50158 * 155.08609 * 11 10 8 14 14 C 1.55164 * 102.86233 * 263.04527 * 4 2 1 15 15 C 1.54909 * 101.58072 * 324.30312 * 14 4 2 16 16 N 1.47023 * 109.88253 * 121.09748 * 2 1 3 17 17 C 1.34771 * 125.64827 * 300.50909 * 16 2 1 18 18 O 1.21288 * 119.99896 * 359.72085 * 17 16 2 19 19 C 1.50703 * 120.00048 * 179.71927 * 17 16 2 20 20 S 1.81000 * 109.46826 * 180.02562 * 19 17 16 21 21 C 1.76205 * 99.99509 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00431 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99884 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99752 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99976 * 180.27840 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71945 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72142 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72250 * 25 23 21 29 29 H 1.08998 * 109.47390 * 300.35259 * 1 2 3 30 30 H 1.08993 * 109.47575 * 60.35862 * 1 2 3 31 31 H 1.09007 * 109.46813 * 180.35949 * 1 2 3 32 32 H 1.00900 * 110.99496 * 36.24017 * 6 4 2 33 33 H 1.08996 * 109.47513 * 299.99919 * 7 6 4 34 34 H 1.09006 * 109.47462 * 60.00270 * 7 6 4 35 35 H 0.97003 * 120.00132 * 359.97438 * 10 8 7 36 36 H 1.08995 * 115.55075 * 9.41359 * 11 10 8 37 37 H 1.09002 * 117.49690 * 359.97438 * 12 11 10 38 38 H 1.08998 * 117.49784 * 145.01756 * 12 11 10 39 39 H 1.08993 * 117.49804 * 214.98006 * 13 11 10 40 40 H 1.08999 * 117.49585 * 359.97438 * 13 11 10 41 41 H 1.08994 * 111.00481 * 206.22908 * 14 4 2 42 42 H 1.08999 * 111.03575 * 82.39296 * 14 4 2 43 43 H 1.09002 * 110.36823 * 278.17461 * 15 14 4 44 44 H 1.08999 * 110.36412 * 155.84551 * 15 14 4 45 45 H 1.09000 * 109.46926 * 60.00592 * 19 17 16 46 46 H 1.09001 * 109.47144 * 300.00330 * 19 17 16 47 47 H 0.97005 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0574 -0.7475 -1.2427 5 1 2.9701 -0.2860 -1.6197 6 7 1.0300 -0.7953 -2.2916 7 6 1.6306 -1.0636 -3.6050 8 6 0.5486 -1.1046 -4.6533 9 8 -0.6089 -0.9283 -4.3371 10 7 0.8671 -1.3384 -5.9418 11 6 -0.1847 -1.3788 -6.9606 12 6 -0.1201 -2.5011 -7.9987 13 6 0.2164 -1.0635 -8.4031 14 6 2.3476 -2.1693 -0.6933 15 6 2.8524 -1.8530 0.7366 16 7 2.0300 -0.7141 1.1839 17 6 1.7743 -0.3853 2.4656 18 8 1.0809 0.5772 2.7180 19 6 2.3500 -1.2137 3.5853 20 16 1.8295 -0.5234 5.1755 21 6 2.6217 -1.6519 6.2727 22 1 3.2120 -2.4653 5.8772 23 6 2.4870 -1.4956 7.6453 24 7 1.7679 -0.5039 8.1273 25 14 3.3331 -2.6873 8.8085 26 1 2.4214 -3.8215 9.1046 27 1 4.5734 -3.2017 8.1744 28 1 3.6771 -1.9861 10.0716 29 1 -0.3634 0.5193 0.8868 30 1 -0.3634 0.5082 -0.8931 31 1 -0.3633 -1.0277 0.0064 32 1 0.4902 0.0570 -2.3081 33 1 2.3413 -0.2736 -3.8478 34 1 2.1482 -2.0226 -3.5789 35 1 1.7929 -1.4798 -6.1946 36 1 -1.1717 -1.0550 -6.6305 37 1 0.7054 -3.2090 -7.9237 38 1 -1.0645 -2.9152 -8.3516 39 1 -0.5069 -0.5326 -9.0219 40 1 1.2628 -0.8255 -8.5939 41 1 3.1212 -2.6645 -1.2801 42 1 1.4386 -2.7700 -0.6629 43 1 3.9060 -1.5745 0.7141 44 1 2.6998 -2.7112 1.3912 45 1 3.4381 -1.2029 3.5228 46 1 1.9912 -2.2394 3.4999 47 1 1.6741 -0.3944 9.0866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725553617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = -29.787849 kcal Electronic energy + Delta-G solvation = -26638.193438 eV Core-core repulsion = 22755.433346 eV Total energy + Delta-G solvation = -3882.760091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45682 -39.94673 -37.90642 -37.37333 -34.94524 -33.33784 -32.40885 -31.58849 -30.89482 -28.69638 -26.86046 -25.47420 -25.09953 -22.98807 -22.96484 -22.40969 -21.07587 -20.30168 -19.02971 -17.83543 -17.59436 -17.15697 -16.57619 -16.34924 -16.15109 -15.46869 -15.15324 -14.90565 -14.78810 -14.68583 -14.22617 -13.93732 -13.71897 -13.48023 -13.19959 -13.16550 -12.78343 -12.54994 -12.41817 -12.35379 -12.16902 -11.85956 -11.83433 -11.64196 -11.54064 -11.09937 -11.07149 -11.04022 -10.99892 -10.76052 -10.73811 -10.24881 -9.79378 -9.29123 -9.28581 -9.04648 -8.85698 -8.46809 -8.20482 -6.47576 -6.19618 -3.89975 2.15362 2.44219 2.92179 3.11457 3.23706 3.27074 3.31556 3.35597 3.61416 3.82688 4.15103 4.20354 4.22669 4.27909 4.37609 4.42517 4.45772 4.73590 4.81794 4.87405 5.04330 5.05140 5.09583 5.15492 5.23730 5.24882 5.36763 5.40316 5.46458 5.49456 5.54842 5.58159 5.68483 5.77126 5.90264 5.96672 6.00115 6.14977 6.17142 6.42969 6.52009 6.62553 6.90182 7.02143 7.61369 7.72915 7.78227 8.37141 8.61884 9.25571 10.87800 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037007 B = 0.001683 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.424399 B =16634.319027 C =17019.348791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 H 0.072 0.928 4 C 0.077 3.923 5 H 0.062 0.938 6 N -0.659 5.659 7 C 0.041 3.959 8 C 0.516 3.484 9 O -0.518 6.518 10 N -0.707 5.707 11 C 0.081 3.919 12 C -0.194 4.194 13 C -0.190 4.190 14 C -0.121 4.121 15 C 0.100 3.900 16 N -0.620 5.620 17 C 0.550 3.450 18 O -0.513 6.513 19 C -0.146 4.146 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.272 1.272 28 H -0.282 1.282 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.356 0.644 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.401 0.599 36 H 0.138 0.862 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -3.856 -33.717 34.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.033 4.033 5 H 0.080 0.920 6 N -0.295 5.295 7 C -0.092 4.092 8 C 0.302 3.698 9 O -0.392 6.392 10 N -0.359 5.359 11 C -0.025 4.025 12 C -0.232 4.232 13 C -0.229 4.229 14 C -0.160 4.160 15 C -0.024 4.024 16 N -0.358 5.358 17 C 0.339 3.661 18 O -0.387 6.387 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.197 1.197 28 H -0.208 1.208 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.180 0.820 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.235 0.765 36 H 0.156 0.844 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.203 -2.792 -32.691 32.832 hybrid contribution 2.392 -1.250 -0.057 2.700 sum 3.595 -4.042 -32.748 33.192 Atomic orbital electron populations 1.22003 0.93822 1.03178 1.02315 1.21455 0.95721 0.95385 0.83970 0.91033 1.22596 0.93007 0.96824 0.90884 0.91999 1.60399 1.23510 1.44178 1.01435 1.21842 0.94696 1.03425 0.89217 1.20641 0.90570 0.75940 0.82637 1.90743 1.20496 1.47387 1.80562 1.45377 1.09960 1.73682 1.06873 1.21597 0.93957 1.03139 0.83851 1.23444 1.04044 0.92087 1.03641 1.23395 1.02958 0.98966 0.97536 1.22863 1.02266 0.96254 0.94617 1.22296 0.94909 0.89790 0.95386 1.48508 1.52105 1.30528 1.04663 1.19996 0.79994 0.84837 0.81316 1.90695 1.37388 1.28069 1.82541 1.23510 1.03711 1.02528 0.99942 1.85401 1.67457 1.39889 0.90605 1.22866 1.36642 1.15706 0.93122 0.90955 1.24988 0.95261 0.95968 0.97337 1.70024 1.37516 1.29110 1.13616 0.86171 0.79509 0.80230 0.79606 1.20275 1.19715 1.20757 0.90931 0.92000 0.91686 0.82025 0.92070 0.87791 0.76464 0.84426 0.88456 0.87916 0.87825 0.88466 0.90374 0.89291 0.91448 0.90102 0.89388 0.89323 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.40 37.16 0.31 -1.77 16 2 C 0.14 1.72 3.39 -66.96 -0.23 1.49 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.08 0.66 3.13 -65.88 -0.21 0.46 16 5 H 0.06 0.44 7.89 -51.93 -0.41 0.03 16 6 N -0.66 -5.65 5.20 -106.05 -0.55 -6.20 16 7 C 0.04 0.24 6.02 -4.98 -0.03 0.21 16 8 C 0.52 4.15 7.87 -10.98 -0.09 4.06 16 9 O -0.52 -6.51 15.77 5.56 0.09 -6.42 16 10 N -0.71 -3.75 5.57 -53.80 -0.30 -4.04 16 11 C 0.08 0.47 6.43 -67.93 -0.44 0.03 16 12 C -0.19 -0.81 10.46 -26.69 -0.28 -1.09 16 13 C -0.19 -0.71 10.46 -26.69 -0.28 -0.98 16 14 C -0.12 -1.02 6.71 -24.58 -0.16 -1.18 16 15 C 0.10 1.07 6.69 -2.53 -0.02 1.05 16 16 N -0.62 -9.07 3.08 -163.02 -0.50 -9.57 16 17 C 0.55 10.77 7.65 -10.99 -0.08 10.69 16 18 O -0.51 -11.95 14.77 5.55 0.08 -11.87 16 19 C -0.15 -3.05 5.16 36.01 0.19 -2.86 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 25 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 30 H 0.06 0.71 6.27 -51.93 -0.33 0.38 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.36 3.35 6.16 -39.29 -0.24 3.11 16 33 H 0.06 0.24 8.08 -51.93 -0.42 -0.18 16 34 H 0.10 0.45 8.13 -51.93 -0.42 0.03 16 35 H 0.40 0.94 8.83 -40.82 -0.36 0.58 16 36 H 0.14 1.04 7.40 -51.93 -0.38 0.66 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.09 1.72 7.85 -51.91 -0.41 1.32 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -36.95 398.80 -10.27 -47.22 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.48 Total: 0.82 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -1.11 Total: -2.96 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.62 Total: -45.43 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.17 Total: -18.29 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.95 -10.27 -47.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725553617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.435 kcal (2) G-P(sol) polarization free energy of solvation -36.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds