Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99138 * 2 1 4 4 C 1.54336 * 109.99030 * 238.96323 * 2 1 3 5 5 H 1.08994 * 110.66946 * 337.04816 * 4 2 1 6 6 N 1.46907 * 110.84787 * 100.19680 * 4 2 1 7 7 C 1.46896 * 110.99711 * 200.14471 * 6 4 2 8 8 C 1.50705 * 109.47103 * 179.97438 * 7 6 4 9 9 O 1.21278 * 119.99611 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00230 * 179.97438 * 8 7 6 11 11 C 1.47067 * 136.05531 * 359.63553 * 10 8 7 12 12 C 1.53241 * 88.08112 * 207.20422 * 11 10 8 13 13 C 1.47063 * 136.05634 * 180.02562 * 10 8 7 14 14 C 1.55149 * 103.01966 * 218.66083 * 4 2 1 15 15 C 1.54912 * 101.58276 * 35.30714 * 14 4 2 16 16 N 1.47020 * 109.88388 * 121.09352 * 2 1 3 17 17 C 1.34777 * 125.64991 * 298.40045 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.71166 * 17 16 2 19 19 C 1.50702 * 119.99928 * 179.97438 * 17 16 2 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46990 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47522 * 119.99735 * 25 23 21 28 28 H 1.48500 * 109.47073 * 240.00101 * 25 23 21 29 29 H 1.08998 * 109.47283 * 300.35484 * 1 2 3 30 30 H 1.08998 * 109.47209 * 60.36324 * 1 2 3 31 31 H 1.09003 * 109.46983 * 180.35588 * 1 2 3 32 32 H 1.00898 * 110.99963 * 324.09379 * 6 4 2 33 33 H 1.08995 * 109.47253 * 299.99827 * 7 6 4 34 34 H 1.08999 * 109.47405 * 60.00397 * 7 6 4 35 35 H 1.09002 * 113.46677 * 321.93224 * 11 10 8 36 36 H 1.08995 * 113.47074 * 92.37170 * 11 10 8 37 37 H 1.09000 * 114.32238 * 220.46978 * 12 11 10 38 38 H 1.08997 * 114.02162 * 87.71090 * 12 11 10 39 39 H 1.09008 * 113.46578 * 267.61948 * 13 10 8 40 40 H 1.08999 * 113.46987 * 38.00715 * 13 10 8 41 41 H 1.09006 * 111.00811 * 277.23838 * 14 4 2 42 42 H 1.08998 * 111.03714 * 153.39766 * 14 4 2 43 43 H 1.08993 * 110.36878 * 204.14992 * 15 14 4 44 44 H 1.08999 * 110.36498 * 81.82751 * 15 14 4 45 45 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 46 46 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 47 47 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 1.3067 -1.4405 -1.6225 6 7 2.4648 0.1995 -2.2892 7 6 2.5089 -0.4551 -3.6035 8 6 2.9288 0.5456 -4.6492 9 8 3.1682 1.6910 -4.3308 10 7 3.0393 0.1673 -5.9381 11 6 2.8523 -1.0794 -6.6955 12 6 3.8715 -0.5541 -7.7121 13 6 3.4066 0.8178 -7.2048 14 6 3.2864 -1.5182 -0.6916 15 6 2.8100 -1.8824 0.7368 16 7 2.0301 -0.7140 1.1839 17 6 1.8074 -0.3620 2.4657 18 8 1.1475 0.6238 2.7179 19 6 2.3833 -1.1900 3.5854 20 16 1.9186 -0.4610 5.1756 21 6 2.7003 -1.5965 6.2728 22 1 3.2573 -2.4332 5.8775 23 6 2.6013 -1.4153 7.6454 24 7 1.9238 -0.3948 8.1273 25 14 3.4306 -2.6187 8.8087 26 1 4.1241 -3.6699 8.0218 27 1 4.4191 -1.8949 9.6478 28 1 2.4074 -3.2486 9.6814 29 1 -0.3634 0.5193 0.8868 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 1.8555 1.0035 -2.3060 33 1 3.2258 -1.2757 -3.5768 34 1 1.5207 -0.8438 -3.8492 35 1 3.1920 -1.9669 -6.1615 36 1 1.8486 -1.1920 -7.1054 37 1 3.6141 -0.7571 -8.7517 38 1 4.9063 -0.7936 -7.4673 39 1 2.5520 1.2161 -7.7520 40 1 4.2158 1.5409 -7.1028 41 1 4.1670 -0.8767 -0.6579 42 1 3.4814 -2.4154 -1.2790 43 1 3.6656 -2.0410 1.3931 44 1 2.1803 -2.7717 0.7115 45 1 1.9933 -2.2061 3.5237 46 1 3.4697 -1.2120 3.4993 47 1 1.8542 -0.2683 9.0865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734391670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = -18.494523 kcal Electronic energy + Delta-G solvation = -26804.536570 eV Core-core repulsion = 22922.266194 eV Total energy + Delta-G solvation = -3882.270376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.77912 -40.09394 -38.41728 -37.49979 -34.94135 -32.40998 -31.85703 -31.15006 -30.41614 -28.55444 -27.15383 -26.30602 -25.46730 -24.51841 -22.88616 -22.37234 -20.83844 -19.53560 -18.91853 -17.70095 -17.52152 -16.93456 -16.78395 -16.49697 -16.19453 -15.65400 -14.94785 -14.79025 -14.72781 -14.41855 -13.98979 -13.86891 -13.83048 -13.46961 -13.24900 -13.13874 -13.11892 -12.80832 -12.62199 -12.51355 -12.37263 -12.10549 -11.87868 -11.72300 -11.50041 -11.35398 -11.19800 -11.05731 -10.99220 -10.81845 -10.73699 -10.16275 -9.78448 -9.31342 -9.23179 -9.05546 -8.87460 -8.47244 -8.20048 -6.47607 -6.19794 -3.90082 2.18487 2.28103 2.89583 3.11322 3.22847 3.26795 3.32225 3.57481 3.69648 3.79562 4.03519 4.19649 4.23525 4.35140 4.43037 4.54611 4.75652 4.78301 4.80084 4.84705 4.90161 5.02588 5.05425 5.12931 5.14384 5.15481 5.16784 5.23861 5.32214 5.39659 5.52767 5.53382 5.57022 5.64771 5.70077 5.90973 5.95134 6.02449 6.16609 6.23720 6.50912 6.59828 6.91169 7.22877 7.61681 7.72609 7.76900 8.37341 8.61393 9.25536 10.87701 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031362 B = 0.001769 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.589623 B =15821.127510 C =16253.621340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.084 0.916 4 C 0.079 3.921 5 H 0.063 0.937 6 N -0.662 5.662 7 C 0.051 3.949 8 C 0.540 3.460 9 O -0.520 6.520 10 N -0.655 5.655 11 C 0.098 3.902 12 C -0.156 4.156 13 C 0.103 3.897 14 C -0.123 4.123 15 C 0.101 3.899 16 N -0.620 5.620 17 C 0.550 3.450 18 O -0.513 6.513 19 C -0.146 4.146 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.355 0.645 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -6.511 -34.512 35.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.102 0.898 4 C -0.031 4.031 5 H 0.081 0.919 6 N -0.296 5.296 7 C -0.082 4.082 8 C 0.329 3.671 9 O -0.394 6.394 10 N -0.393 5.393 11 C -0.025 4.025 12 C -0.194 4.194 13 C -0.019 4.019 14 C -0.161 4.161 15 C -0.023 4.023 16 N -0.358 5.358 17 C 0.338 3.662 18 O -0.387 6.387 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.175 0.825 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.505 -4.283 -33.318 33.626 hybrid contribution 0.298 -2.144 0.175 2.172 sum 1.803 -6.427 -33.143 33.809 Atomic orbital electron populations 1.22185 0.94731 1.02263 1.03137 1.21476 0.94182 0.97026 0.83940 0.89768 1.22645 0.96272 0.93464 0.90764 0.91887 1.60184 1.58410 1.09131 1.01840 1.21727 1.01492 0.96308 0.88625 1.20213 0.76960 0.88999 0.80882 1.90757 1.48889 1.20151 1.79620 1.49704 1.69642 1.14616 1.05357 1.22970 0.99716 0.88786 0.91038 1.23348 1.00185 0.96208 0.99656 1.22924 0.99949 0.96861 0.82204 1.22864 0.98417 1.00178 0.94687 1.22297 0.95753 0.88898 0.95351 1.48478 1.54099 1.28540 1.04639 1.20005 0.79757 0.85074 0.81315 1.90695 1.38780 1.26723 1.82527 1.23509 1.03673 1.02584 0.99920 1.85405 1.69889 1.37478 0.90613 1.22905 1.38414 1.13827 0.93111 0.90890 1.24992 0.95262 0.95988 0.97354 1.70032 1.38764 1.27935 1.13540 0.86117 0.79010 0.80258 0.80107 1.19625 1.20562 1.20587 0.90316 0.92331 0.92551 0.82475 0.87944 0.92220 0.90227 0.89576 0.89033 0.88633 0.89808 0.90336 0.89276 0.90328 0.90018 0.91493 0.89366 0.89296 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.11 37.16 0.34 -1.70 16 2 C 0.14 1.77 2.99 -66.95 -0.20 1.57 16 3 H 0.08 1.23 7.97 -51.93 -0.41 0.82 16 4 C 0.08 0.73 2.77 -65.87 -0.18 0.54 16 5 H 0.06 0.49 7.60 -51.93 -0.39 0.10 16 6 N -0.66 -6.36 5.93 -106.05 -0.63 -6.99 16 7 C 0.05 0.37 5.85 -4.98 -0.03 0.34 16 8 C 0.54 5.26 8.12 -10.98 -0.09 5.17 16 9 O -0.52 -7.46 16.98 5.56 0.09 -7.37 16 10 N -0.65 -4.39 3.69 -185.42 -0.68 -5.08 16 11 C 0.10 0.26 8.40 -8.63 -0.07 0.19 16 12 C -0.16 -0.32 8.48 -26.36 -0.22 -0.55 16 13 C 0.10 0.50 8.61 -8.51 -0.07 0.42 16 14 C -0.12 -1.09 6.71 -24.59 -0.17 -1.26 16 15 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16 16 N -0.62 -9.26 3.06 -163.01 -0.50 -9.76 16 17 C 0.55 10.90 7.66 -10.98 -0.08 10.81 16 18 O -0.51 -12.08 14.91 5.55 0.08 -12.00 16 19 C -0.15 -3.07 5.16 36.01 0.19 -2.88 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 22 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 25 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 29 H 0.08 1.24 6.89 -51.93 -0.36 0.88 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.35 3.67 8.15 -39.29 -0.32 3.35 16 33 H 0.10 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 36 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 38 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.89 7.47 -51.93 -0.39 0.51 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 46 H 0.09 1.74 7.84 -51.92 -0.41 1.34 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 400.73 15.07 6.04 6.04 Total: -1.00 -38.09 400.73 -10.25 -48.34 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.74 Total: -0.83 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -0.41 Total: 0.65 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -1.08 Total: -47.52 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.18 Total: -19.36 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.09 -10.25 -48.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734391670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.846 kcal (2) G-P(sol) polarization free energy of solvation -38.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds