Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99138 * 2 1 4 4 C 1.54336 * 109.99030 * 238.96323 * 2 1 3 5 5 H 1.08994 * 110.66946 * 337.04816 * 4 2 1 6 6 N 1.46907 * 110.84787 * 100.19680 * 4 2 1 7 7 C 1.46896 * 110.99711 * 200.14471 * 6 4 2 8 8 C 1.50705 * 109.47103 * 179.97438 * 7 6 4 9 9 O 1.21278 * 119.99611 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00230 * 179.97438 * 8 7 6 11 11 C 1.47067 * 136.05531 * 359.63553 * 10 8 7 12 12 C 1.53241 * 88.08112 * 207.20422 * 11 10 8 13 13 C 1.47063 * 136.05634 * 180.02562 * 10 8 7 14 14 C 1.55149 * 103.01966 * 218.66083 * 4 2 1 15 15 C 1.54912 * 101.58276 * 35.30714 * 14 4 2 16 16 N 1.47020 * 109.88388 * 121.09352 * 2 1 3 17 17 C 1.34777 * 125.64991 * 298.40045 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.71166 * 17 16 2 19 19 C 1.50702 * 119.99928 * 179.97438 * 17 16 2 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46990 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47522 * 119.99735 * 25 23 21 28 28 H 1.48500 * 109.47073 * 240.00101 * 25 23 21 29 29 H 1.08998 * 109.47283 * 300.35484 * 1 2 3 30 30 H 1.08998 * 109.47209 * 60.36324 * 1 2 3 31 31 H 1.09003 * 109.46983 * 180.35588 * 1 2 3 32 32 H 1.00898 * 110.99963 * 324.09379 * 6 4 2 33 33 H 1.08995 * 109.47253 * 299.99827 * 7 6 4 34 34 H 1.08999 * 109.47405 * 60.00397 * 7 6 4 35 35 H 1.09002 * 113.46677 * 321.93224 * 11 10 8 36 36 H 1.08995 * 113.47074 * 92.37170 * 11 10 8 37 37 H 1.09000 * 114.32238 * 220.46978 * 12 11 10 38 38 H 1.08997 * 114.02162 * 87.71090 * 12 11 10 39 39 H 1.09008 * 113.46578 * 267.61948 * 13 10 8 40 40 H 1.08999 * 113.46987 * 38.00715 * 13 10 8 41 41 H 1.09006 * 111.00811 * 277.23838 * 14 4 2 42 42 H 1.08998 * 111.03714 * 153.39766 * 14 4 2 43 43 H 1.08993 * 110.36878 * 204.14992 * 15 14 4 44 44 H 1.08999 * 110.36498 * 81.82751 * 15 14 4 45 45 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 46 46 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 47 47 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 1.3067 -1.4405 -1.6225 6 7 2.4648 0.1995 -2.2892 7 6 2.5089 -0.4551 -3.6035 8 6 2.9288 0.5456 -4.6492 9 8 3.1682 1.6910 -4.3308 10 7 3.0393 0.1673 -5.9381 11 6 2.8523 -1.0794 -6.6955 12 6 3.8715 -0.5541 -7.7121 13 6 3.4066 0.8178 -7.2048 14 6 3.2864 -1.5182 -0.6916 15 6 2.8100 -1.8824 0.7368 16 7 2.0301 -0.7140 1.1839 17 6 1.8074 -0.3620 2.4657 18 8 1.1475 0.6238 2.7179 19 6 2.3833 -1.1900 3.5854 20 16 1.9186 -0.4610 5.1756 21 6 2.7003 -1.5965 6.2728 22 1 3.2573 -2.4332 5.8775 23 6 2.6013 -1.4153 7.6454 24 7 1.9238 -0.3948 8.1273 25 14 3.4306 -2.6187 8.8087 26 1 4.1241 -3.6699 8.0218 27 1 4.4191 -1.8949 9.6478 28 1 2.4074 -3.2486 9.6814 29 1 -0.3634 0.5193 0.8868 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 1.8555 1.0035 -2.3060 33 1 3.2258 -1.2757 -3.5768 34 1 1.5207 -0.8438 -3.8492 35 1 3.1920 -1.9669 -6.1615 36 1 1.8486 -1.1920 -7.1054 37 1 3.6141 -0.7571 -8.7517 38 1 4.9063 -0.7936 -7.4673 39 1 2.5520 1.2161 -7.7520 40 1 4.2158 1.5409 -7.1028 41 1 4.1670 -0.8767 -0.6579 42 1 3.4814 -2.4154 -1.2790 43 1 3.6656 -2.0410 1.3931 44 1 2.1803 -2.7717 0.7115 45 1 1.9933 -2.2061 3.5237 46 1 3.4697 -1.2120 3.4993 47 1 1.8542 -0.2683 9.0865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734391670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = -47.246051 kcal Electronic energy + Delta-G solvation = -26805.783330 eV Core-core repulsion = 22922.266194 eV Total energy + Delta-G solvation = -3883.517136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41847 -41.10935 -39.21454 -38.59249 -35.86902 -34.59377 -32.94282 -32.05969 -31.16754 -29.91652 -27.78968 -27.64132 -26.72334 -25.29431 -23.96081 -22.82301 -21.66413 -20.53335 -19.84375 -19.44715 -18.29520 -17.94964 -17.51971 -17.37737 -16.98310 -16.89156 -16.45405 -16.33228 -15.93102 -15.49999 -15.15006 -14.81340 -14.68552 -14.50746 -14.34445 -14.07964 -13.83568 -13.75136 -13.51130 -13.43485 -13.18355 -13.15985 -13.11655 -12.91502 -12.75341 -12.57945 -12.41375 -12.34917 -12.00257 -11.74003 -11.67917 -11.63395 -11.16477 -10.92195 -10.81519 -10.28428 -9.74205 -9.71747 -9.49489 -8.68876 -8.35349 -6.14215 1.22521 1.41384 1.43805 1.56308 1.57114 1.59039 1.77430 2.07319 2.26563 2.98851 3.06312 3.19399 3.38210 3.46049 3.57803 3.64398 3.87373 4.01151 4.13306 4.21025 4.23650 4.26404 4.31126 4.34454 4.35867 4.43829 4.46142 4.53128 4.53759 4.65352 4.66999 4.70139 4.76744 4.86888 4.96450 5.01136 5.03321 5.18876 5.24021 5.34202 5.41136 5.42943 5.92006 6.15006 6.19331 6.40869 6.74158 7.05674 7.12832 7.14361 8.74299 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031362 B = 0.001769 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.589623 B =15821.127510 C =16253.621340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.131 3.869 3 H 0.056 0.944 4 C 0.096 3.904 5 H 0.093 0.907 6 N -0.681 5.681 7 C 0.058 3.942 8 C 0.529 3.471 9 O -0.584 6.584 10 N -0.661 5.661 11 C 0.099 3.901 12 C -0.139 4.139 13 C 0.087 3.913 14 C -0.113 4.113 15 C 0.090 3.910 16 N -0.612 5.612 17 C 0.546 3.454 18 O -0.564 6.564 19 C -0.118 4.118 20 S -0.153 6.153 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 1.001 2.999 26 H -0.255 1.255 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.347 0.653 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -10.675 -37.237 38.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.074 0.926 4 C -0.014 4.014 5 H 0.110 0.890 6 N -0.314 5.314 7 C -0.074 4.074 8 C 0.320 3.680 9 O -0.464 6.464 10 N -0.397 5.397 11 C -0.022 4.022 12 C -0.177 4.177 13 C -0.035 4.035 14 C -0.151 4.151 15 C -0.032 4.032 16 N -0.347 5.347 17 C 0.334 3.666 18 O -0.443 6.443 19 C -0.269 4.269 20 S 0.075 5.925 21 C -0.693 4.693 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.822 3.178 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.198 1.198 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.166 0.834 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.137 0.863 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.384 -8.526 -36.148 37.216 hybrid contribution 0.042 -0.828 0.787 1.143 sum 2.426 -9.353 -35.361 36.658 Atomic orbital electron populations 1.22100 0.94356 1.02781 1.02330 1.21656 0.94561 0.96231 0.84826 0.92553 1.22539 0.96978 0.93034 0.88889 0.88950 1.60160 1.58634 1.09322 1.03266 1.21787 1.03381 0.95637 0.86556 1.20751 0.76367 0.88632 0.82291 1.90724 1.52048 1.22712 1.80926 1.49934 1.68008 1.16764 1.05028 1.23260 1.00993 0.87647 0.90342 1.23297 0.99978 0.93428 1.00982 1.23195 1.00022 0.98256 0.82039 1.22865 0.97287 1.01390 0.93548 1.22704 0.95839 0.88048 0.96649 1.48435 1.53204 1.29518 1.03546 1.19790 0.79609 0.84441 0.82788 1.90677 1.41210 1.28779 1.83620 1.23298 1.04544 1.02906 0.96197 1.85616 1.71090 1.39972 0.95868 1.23231 1.38498 1.13904 0.93655 0.89826 1.26159 0.95730 0.97982 0.99326 1.70200 1.40366 1.30171 1.14121 0.84877 0.77872 0.77671 0.77341 1.17870 1.19980 1.19823 0.94461 0.89866 0.91172 0.83360 0.85783 0.89499 0.88483 0.87612 0.86473 0.88901 0.88684 0.92455 0.90940 0.86284 0.89887 0.88876 0.87336 0.87753 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.11 71.98 0.66 -3.17 16 2 C 0.13 3.28 2.99 45.35 0.14 3.42 16 3 H 0.06 1.73 7.97 -2.39 -0.02 1.71 16 4 C 0.10 1.48 2.77 46.10 0.13 1.61 16 5 H 0.09 0.96 7.60 -2.39 -0.02 0.95 16 6 N -0.68 -11.94 5.93 -489.44 -2.90 -14.84 16 7 C 0.06 0.66 5.85 85.56 0.50 1.16 16 8 C 0.53 9.81 8.12 87.66 0.71 10.52 16 9 O -0.58 -17.44 16.98 -3.02 -0.05 -17.49 16 10 N -0.66 -7.72 3.69 -858.95 -3.17 -10.89 16 11 C 0.10 0.17 8.40 83.10 0.70 0.87 16 12 C -0.14 -0.18 8.48 30.84 0.26 0.09 16 13 C 0.09 0.75 8.61 83.18 0.72 1.47 16 14 C -0.11 -1.58 6.71 31.98 0.21 -1.37 16 15 C 0.09 1.69 6.69 86.86 0.58 2.27 16 16 N -0.61 -17.82 3.06 -788.03 -2.41 -20.24 16 17 C 0.55 22.07 7.66 87.66 0.67 22.75 16 18 O -0.56 -28.12 14.91 -3.04 -0.05 -28.17 16 19 C -0.12 -4.98 5.16 71.24 0.37 -4.61 16 20 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 21 C -0.55 -31.70 9.50 67.95 0.65 -31.06 16 22 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -56.95 13.22 21.65 0.29 -56.67 16 25 Si 1.00 44.08 29.55 68.60 2.03 46.11 16 26 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H 0.04 1.22 6.89 -2.39 -0.02 1.20 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.35 7.10 8.15 -89.70 -0.73 6.37 16 33 H 0.12 0.88 8.13 -2.39 -0.02 0.86 16 34 H 0.09 0.56 8.08 -2.39 -0.02 0.54 16 35 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 1.58 7.47 -2.39 -0.02 1.56 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 46 H 0.10 4.03 7.84 -2.40 -0.02 4.01 16 47 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -90.43 400.73 -0.45 -90.88 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.23 Total: 16.10 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 6.75 Total: 5.14 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -8.20 Total: -102.64 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.10 Total: -45.66 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -90.43 -0.45 -90.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734391670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.630 kcal (2) G-P(sol) polarization free energy of solvation -90.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds