Wall clock time and date at job start Sat Apr 11 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.91271 * 2 1 4 4 C 1.53996 * 109.91611 * 238.89106 * 2 1 3 5 5 H 1.09000 * 110.30390 * 120.20940 * 4 2 1 6 6 C 1.50696 * 110.30840 * 358.14802 * 4 2 1 7 7 O 1.21280 * 120.00033 * 273.44327 * 6 4 2 8 8 N 1.34783 * 120.00268 * 93.44675 * 6 4 2 9 9 C 1.46503 * 120.00115 * 179.97438 * 8 6 4 10 10 C 1.53496 * 114.20458 * 154.99737 * 9 8 6 11 11 N 1.47068 * 87.98485 * 87.52124 * 10 9 8 12 12 C 1.34770 * 136.05939 * 207.08951 * 11 10 9 13 13 O 1.21284 * 120.00160 * 359.97438 * 12 11 10 14 14 C 1.50704 * 120.00394 * 179.97438 * 12 11 10 15 15 S 1.80995 * 109.47396 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99944 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99896 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99985 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99938 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99992 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46921 * 89.99977 * 20 18 16 22 22 H 1.48498 * 109.46849 * 209.99843 * 20 18 16 23 23 H 1.48498 * 109.47322 * 330.00053 * 20 18 16 24 24 C 1.47074 * 87.88279 * 27.33945 * 11 10 9 25 25 C 1.54593 * 105.14315 * 239.22669 * 4 2 1 26 26 C 1.54935 * 102.92239 * 338.04673 * 25 4 2 27 27 N 1.47903 * 110.07939 * 121.20990 * 2 1 3 28 28 C 1.46906 * 110.99838 * 265.28683 * 27 2 1 29 29 H 1.08994 * 109.47640 * 182.98826 * 1 2 3 30 30 H 1.09005 * 109.46692 * 302.99112 * 1 2 3 31 31 H 1.09001 * 109.46991 * 62.98356 * 1 2 3 32 32 H 0.96999 * 119.99490 * 359.97438 * 8 6 4 33 33 H 1.09002 * 113.28268 * 21.93349 * 9 8 6 34 34 H 1.08995 * 113.46762 * 332.73909 * 10 9 8 35 35 H 1.09001 * 113.52082 * 202.30801 * 10 9 8 36 36 H 1.09006 * 109.46746 * 59.99471 * 14 12 11 37 37 H 1.09002 * 109.47051 * 299.99829 * 14 12 11 38 38 H 0.97002 * 120.00410 * 180.02562 * 19 18 16 39 39 H 1.08998 * 113.46641 * 87.44111 * 24 11 10 40 40 H 1.08999 * 113.46702 * 217.87690 * 24 11 10 41 41 H 1.09008 * 110.71731 * 96.39980 * 25 4 2 42 42 H 1.08991 * 110.72350 * 219.68630 * 25 4 2 43 43 H 1.08993 * 110.66706 * 278.97631 * 26 25 4 44 44 H 1.09003 * 110.81170 * 155.91092 * 26 25 4 45 45 H 1.08999 * 109.46952 * 59.99651 * 28 27 2 46 46 H 1.08999 * 109.47113 * 180.02562 * 28 27 2 47 47 H 1.08997 * 109.46947 * 300.00070 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0546 -0.7481 -1.2396 5 1 2.6670 -0.0849 -1.8505 6 6 0.9047 -1.2898 -2.0490 7 8 0.4331 -2.3748 -1.7819 8 7 0.4003 -0.5687 -3.0700 9 6 -0.7172 -1.0957 -3.8572 10 6 -1.5693 -0.0173 -4.5406 11 7 -0.6377 -0.0751 -5.6771 12 6 -0.2281 0.7739 -6.6403 13 8 -0.6717 1.9019 -6.6832 14 6 0.7812 0.3218 -7.6641 15 16 1.1237 1.6775 -8.8133 16 6 2.2987 0.8952 -9.8679 17 1 2.5893 -0.1290 -9.6865 18 6 2.8507 1.5952 -10.9317 19 7 2.4961 2.8434 -11.1531 20 14 4.0969 0.7661 -12.0492 21 1 3.3892 0.1044 -13.1748 22 1 5.0358 1.7842 -12.5850 23 1 4.8562 -0.2495 -11.2765 24 6 -0.3545 -1.4692 -5.3038 25 6 2.9100 -1.9076 -0.6796 26 6 3.2732 -1.4143 0.7435 27 7 2.0378 -0.7198 1.1881 28 6 2.3244 0.2131 2.2861 29 1 -0.3634 -1.0262 0.0536 30 1 -0.3633 0.5596 0.8620 31 1 -0.3633 0.4668 -0.9155 32 1 0.7773 0.2991 -3.2834 33 1 -1.2954 -1.8547 -3.3301 34 1 -1.5587 0.9395 -4.0189 35 1 -2.5770 -0.3512 -4.7880 36 1 0.3827 -0.5298 -8.2157 37 1 1.7031 0.0297 -7.1611 38 1 2.8816 3.3326 -11.8967 39 1 -1.0417 -2.1868 -5.7522 40 1 0.6910 -1.7492 -5.4323 41 1 2.3280 -2.8281 -0.6319 42 1 3.8086 -2.0488 -1.2800 43 1 4.1129 -0.7202 0.7074 44 1 3.4989 -2.2554 1.3991 45 1 1.4117 0.7417 2.5613 46 1 2.6966 -0.3423 3.1469 47 1 3.0778 0.9321 1.9646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738003501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:32 Heat of formation + Delta-G solvation = -47.383315 kcal Electronic energy + Delta-G solvation = -27403.999575 eV Core-core repulsion = 23520.476487 eV Total energy + Delta-G solvation = -3883.523088 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99304 -41.04938 -39.35560 -38.55186 -34.80504 -34.60673 -33.31352 -32.38613 -31.78441 -29.19140 -27.71437 -27.49727 -26.92523 -25.86272 -23.95847 -22.30251 -21.95800 -20.63729 -20.35108 -19.52330 -18.27156 -18.00293 -17.33083 -17.21214 -16.91797 -16.82710 -16.55769 -16.15197 -15.90726 -15.69352 -15.48955 -14.99642 -14.78924 -14.57186 -14.27687 -14.08295 -13.72509 -13.54219 -13.51863 -13.30407 -13.20465 -13.08822 -13.05477 -12.90863 -12.71451 -12.60619 -12.27079 -12.15494 -12.05029 -11.90401 -11.75648 -11.70723 -11.16385 -10.96295 -10.88305 -10.31987 -10.14797 -9.81876 -9.42241 -8.70201 -8.36867 -6.15555 1.19067 1.41118 1.41394 1.52222 1.53902 1.55652 1.96170 2.03972 2.25208 2.97277 2.97448 3.15664 3.30450 3.46811 3.52665 3.62074 3.80101 3.91233 4.15351 4.15925 4.24504 4.30562 4.31498 4.42911 4.43544 4.47840 4.48973 4.50203 4.59758 4.63581 4.70959 4.76488 4.77523 4.83331 4.85253 4.96465 5.01255 5.03643 5.21936 5.30161 5.39419 5.46339 5.89359 6.07590 6.17510 6.42823 6.56861 7.04362 7.07803 7.17655 8.72291 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.002258 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.974667 B =12399.150679 C =13236.580780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.079 3.921 3 H 0.072 0.928 4 C -0.122 4.122 5 H 0.113 0.887 6 C 0.541 3.459 7 O -0.561 6.561 8 N -0.706 5.706 9 C 0.121 3.879 10 C 0.098 3.902 11 N -0.650 5.650 12 C 0.562 3.438 13 O -0.565 6.565 14 C -0.119 4.119 15 S -0.147 6.147 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.258 1.258 24 C 0.085 3.915 25 C -0.111 4.111 26 C 0.038 3.962 27 N -0.534 5.534 28 C 0.016 3.984 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.409 0.591 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.272 0.728 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 -10.966 25.974 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 H 0.090 0.910 4 C -0.144 4.144 5 H 0.131 0.869 6 C 0.329 3.671 7 O -0.439 6.439 8 N -0.357 5.357 9 C 0.014 3.986 10 C -0.025 4.025 11 N -0.387 5.387 12 C 0.352 3.648 13 O -0.444 6.444 14 C -0.270 4.270 15 S 0.081 5.919 16 C -0.694 4.694 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.546 5.546 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.182 1.182 24 C -0.038 4.038 25 C -0.149 4.149 26 C -0.089 4.089 27 N -0.259 5.259 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.245 0.755 33 H 0.157 0.843 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.517 -10.135 26.061 28.075 hybrid contribution 1.785 -0.247 -1.347 2.250 sum -0.732 -10.382 24.714 26.816 Atomic orbital electron populations 1.21885 0.93985 1.02107 1.02120 1.22259 0.96431 0.96105 0.88169 0.90968 1.22353 0.95530 0.99687 0.96780 0.86919 1.20446 0.83620 0.84078 0.79005 1.90686 1.61649 1.22405 1.69187 1.45713 1.35124 1.22696 1.32155 1.22178 0.88600 0.97116 0.90730 1.23578 0.95363 1.00092 0.83436 1.49697 1.44964 1.14745 1.29271 1.19539 0.81478 0.84002 0.79814 1.90703 1.58819 1.21333 1.73546 1.23261 1.01035 1.03776 0.98957 1.85546 1.56215 1.18306 1.31871 1.23170 1.28402 1.01709 1.16137 0.90111 1.26125 0.98966 0.95462 0.98533 1.70176 1.43470 1.10790 1.30207 0.84955 0.77268 0.77993 0.77780 1.19321 1.20176 1.18240 1.23894 1.03826 0.83091 0.93005 1.22489 0.99319 0.97356 0.95754 1.23261 0.91179 0.98915 0.95592 1.64693 1.27284 1.27147 1.06751 1.22559 1.01030 0.95182 0.94498 0.93018 0.91834 0.91695 0.75543 0.84261 0.90228 0.86039 0.87981 0.87883 0.91924 0.85958 0.90014 0.90773 0.89214 0.92331 0.89226 0.91118 0.90472 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.37 71.98 0.60 -1.63 16 2 C 0.08 1.13 3.08 45.06 0.14 1.27 16 3 H 0.07 0.88 7.73 -2.39 -0.02 0.86 16 4 C -0.12 -1.76 3.38 -10.66 -0.04 -1.80 16 5 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 6 C 0.54 9.70 4.75 87.65 0.42 10.12 16 7 O -0.56 -13.67 14.58 -3.03 -0.04 -13.72 16 8 N -0.71 -10.88 4.88 -441.52 -2.15 -13.03 16 9 C 0.12 1.74 4.61 45.55 0.21 1.95 16 10 C 0.10 1.66 8.38 83.18 0.70 2.35 16 11 N -0.65 -15.97 3.69 -857.81 -3.16 -19.14 16 12 C 0.56 20.73 8.10 87.66 0.71 21.44 16 13 O -0.57 -26.15 16.64 -3.04 -0.05 -26.21 16 14 C -0.12 -4.77 5.98 71.24 0.43 -4.34 16 15 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 16 C -0.55 -31.06 9.50 67.96 0.65 -30.42 16 17 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 18 C 0.01 0.79 5.49 84.86 0.47 1.26 16 19 N -0.91 -55.51 13.22 21.65 0.29 -55.23 16 20 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 C 0.09 1.41 8.25 83.26 0.69 2.09 16 25 C -0.11 -1.63 6.56 31.80 0.21 -1.42 16 26 C 0.04 0.48 6.56 86.65 0.57 1.05 16 27 N -0.53 -7.97 5.19 -884.06 -4.59 -12.56 16 28 C 0.02 0.17 9.40 127.69 1.20 1.37 16 29 H 0.05 1.06 7.04 -2.39 -0.02 1.04 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.94 7.07 -2.39 -0.02 0.92 16 32 H 0.41 6.02 8.76 -92.71 -0.81 5.20 16 33 H 0.14 1.82 7.45 -2.39 -0.02 1.80 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 39 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.45 6.89 -2.38 -0.02 1.43 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 0.61 7.96 -2.39 -0.02 0.59 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.04 0.34 8.00 -2.39 -0.02 0.32 16 Total: -1.00 -80.02 396.78 -1.75 -81.78 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.16 Total: 18.79 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 6.94 Total: 3.30 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -9.62 Total: -99.95 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -0.09 Total: -39.92 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -80.02 -1.75 -81.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738003501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.392 kcal (2) G-P(sol) polarization free energy of solvation -80.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds