Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46573 * 2 1 4 4 N 1.46492 * 109.47171 * 119.99889 * 2 1 3 5 5 C 1.36943 * 120.00313 * 275.00143 * 4 2 1 6 6 H 1.07996 * 119.99487 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99705 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00547 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99513 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47208 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46912 * 120.00318 * 9 7 5 12 12 H 1.48506 * 109.46938 * 240.00337 * 9 7 5 13 13 C 1.50697 * 109.47054 * 240.00223 * 2 1 3 14 14 C 1.38240 * 120.00014 * 99.99771 * 13 2 1 15 15 C 1.38236 * 119.99807 * 180.02562 * 14 13 2 16 16 C 1.38227 * 120.00317 * 359.95638 * 15 14 13 17 17 C 1.50701 * 120.00429 * 180.02562 * 16 15 14 18 18 N 1.46495 * 109.47162 * 89.99822 * 17 16 15 19 19 C 1.34774 * 119.99875 * 180.02562 * 18 17 16 20 20 O 1.21568 * 120.00040 * 0.02562 * 19 18 17 21 21 C 1.47730 * 119.99842 * 180.02562 * 19 18 17 22 22 N 1.33019 * 120.16575 * 5.56440 * 21 19 18 23 23 C 1.31723 * 120.01084 * 179.97438 * 22 21 19 24 24 C 1.38802 * 120.34485 * 0.02562 * 23 22 21 25 25 N 1.32029 * 120.32727 * 0.02562 * 24 23 22 26 26 C 1.32833 * 119.97987 * 359.97438 * 25 24 23 27 27 N 1.38270 * 120.16625 * 179.97438 * 26 25 24 28 28 C 1.38246 * 119.99882 * 0.27951 * 16 15 14 29 29 C 1.38233 * 119.99983 * 280.02284 * 13 2 1 30 30 H 1.08994 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46830 * 299.99866 * 1 2 3 32 32 H 1.08998 * 109.46910 * 59.99727 * 1 2 3 33 33 H 0.97003 * 120.00158 * 94.99794 * 4 2 1 34 34 H 0.96998 * 120.00093 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.00027 * 0.02562 * 14 13 2 36 36 H 1.08001 * 119.99872 * 179.97438 * 15 14 13 37 37 H 1.09006 * 109.46777 * 329.99948 * 17 16 15 38 38 H 1.08996 * 109.47286 * 210.00442 * 17 16 15 39 39 H 0.97002 * 120.00189 * 0.02562 * 18 17 16 40 40 H 1.08004 * 119.82664 * 180.28257 * 23 22 21 41 41 H 1.08001 * 119.83582 * 179.97438 * 24 23 22 42 42 H 0.97001 * 120.00211 * 354.62053 * 27 26 25 43 43 H 0.97000 * 120.00117 * 174.62698 * 27 26 25 44 44 H 1.07998 * 120.00093 * 179.72778 * 28 16 15 45 45 H 1.07996 * 120.00168 * 359.97438 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3758 6 1 1.8919 1.0403 2.4243 7 6 2.6114 -0.6620 3.5092 8 7 2.9244 -1.9390 3.4501 9 14 2.7905 0.2701 5.1182 10 1 2.3765 1.6825 4.9208 11 1 1.9293 -0.3578 6.1524 12 1 4.2074 0.2262 5.5606 13 6 2.0324 -0.7103 -1.2305 14 6 2.4587 0.0196 -2.3243 15 6 2.9190 -0.6321 -3.4532 16 6 2.9538 -2.0135 -3.4880 17 6 3.4561 -2.7239 -4.7185 18 7 4.9013 -2.9347 -4.6049 19 6 5.5717 -3.5555 -5.5957 20 8 4.9772 -3.9400 -6.5838 21 6 7.0291 -3.7685 -5.4808 22 7 7.6647 -3.4498 -4.3566 23 6 8.9641 -3.6416 -4.2574 24 6 9.6775 -4.1752 -5.3217 25 7 9.0604 -4.4954 -6.4442 26 6 7.7504 -4.3075 -6.5583 27 7 7.1003 -4.6410 -7.7323 28 6 2.5228 -2.7435 -2.3960 29 6 2.0663 -2.0918 -1.2656 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2478 -2.3963 4.2421 35 1 2.4322 1.0989 -2.2969 36 1 3.2517 -0.0619 -4.3080 37 1 3.2455 -2.1176 -5.5995 38 1 2.9546 -3.6872 -4.8121 39 1 5.3758 -2.6275 -3.8166 40 1 9.4764 -3.3860 -3.3416 41 1 10.7427 -4.3286 -5.2316 42 1 7.6106 -4.9394 -8.5013 43 1 6.1340 -4.5764 -7.7868 44 1 2.5459 -3.8229 -2.4248 45 1 1.7333 -2.6621 -0.4110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754947896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = 54.835750 kcal Electronic energy + Delta-G solvation = -27858.714463 eV Core-core repulsion = 23876.472727 eV Total energy + Delta-G solvation = -3982.241737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56573 -39.79806 -39.07488 -36.30674 -35.69289 -34.46176 -34.01461 -32.35482 -30.78499 -30.62209 -29.81677 -28.34328 -26.56039 -25.25613 -23.98746 -23.74903 -22.59856 -21.74098 -21.22202 -19.74642 -18.81013 -18.26787 -17.89821 -17.42578 -16.42798 -16.07401 -15.93104 -15.48256 -15.28453 -15.21302 -14.77250 -14.59711 -14.26281 -14.24602 -13.65844 -13.47049 -13.37843 -13.14280 -12.91947 -12.56016 -12.26154 -12.15270 -11.97765 -11.92667 -11.66934 -11.16873 -10.95427 -10.91676 -10.86440 -10.62893 -10.62660 -10.28407 -9.98756 -9.70017 -9.50126 -9.36740 -8.99478 -8.64411 -8.40968 -8.33459 -7.00863 -5.79847 -3.08629 0.20417 0.95287 1.44880 1.68618 2.44069 2.83345 3.18333 3.41566 3.47256 3.49403 3.53684 3.81062 3.97568 4.08089 4.28858 4.57012 4.66579 4.77798 4.91477 4.96362 4.96422 5.20481 5.29009 5.38268 5.52802 5.55022 5.71273 5.77589 5.88156 5.95348 6.01383 6.09169 6.24446 6.30354 6.34778 6.49456 6.61199 6.64351 6.70953 6.76352 6.87220 6.94380 7.11113 7.15398 7.27070 7.30736 7.66012 7.68024 7.93455 8.38415 9.49924 10.05455 10.40652 11.42828 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.002220 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.799150 B =12610.352411 C =14187.419998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.239 4.239 6 H 0.072 0.928 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.291 1.291 13 C -0.052 4.052 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.132 4.132 17 C 0.165 3.835 18 N -0.697 5.697 19 C 0.588 3.412 20 O -0.552 6.552 21 C -0.055 4.055 22 N -0.368 5.368 23 C -0.022 4.022 24 C 0.139 3.861 25 N -0.513 5.513 26 C 0.412 3.588 27 N -0.816 5.816 28 C -0.097 4.097 29 C -0.105 4.105 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.416 0.584 40 H 0.175 0.825 41 H 0.176 0.824 42 H 0.401 0.599 43 H 0.428 0.572 44 H 0.119 0.881 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 -3.585 -21.815 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.090 0.910 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.218 1.218 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.043 3.957 18 N -0.347 5.347 19 C 0.374 3.626 20 O -0.431 6.431 21 C -0.203 4.203 22 N -0.085 5.085 23 C -0.188 4.188 24 C -0.026 4.026 25 N -0.236 5.236 26 C 0.168 3.832 27 N -0.369 5.369 28 C -0.115 4.115 29 C -0.124 4.124 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.253 0.747 40 H 0.192 0.808 41 H 0.193 0.807 42 H 0.230 0.770 43 H 0.274 0.726 44 H 0.137 0.863 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.005 -3.711 -22.395 24.070 hybrid contribution 0.490 0.143 1.145 1.254 sum 8.495 -3.568 -21.249 23.161 Atomic orbital electron populations 1.22421 0.98231 1.01169 1.00155 1.19253 0.92150 0.95010 0.84216 0.92610 1.42529 1.78197 1.10723 1.04917 1.19284 1.36588 0.94015 0.87101 0.91022 1.24740 1.02045 0.96001 0.98095 1.69664 1.50803 1.08669 1.28843 0.86123 0.77328 0.78806 0.83961 1.20539 1.21878 1.21849 1.20536 0.95124 0.94057 0.95582 1.21012 1.00062 0.99803 0.93125 1.20913 0.99485 0.93452 0.98075 1.19603 1.04184 0.93874 0.95643 1.20241 0.79292 1.00278 0.95914 1.45923 1.09127 1.57826 1.21782 1.17509 0.84727 0.77531 0.82840 1.90394 1.68246 1.53206 1.31257 1.21182 0.95398 1.10888 0.92856 1.68091 1.10452 1.08577 1.21370 1.23458 0.90122 1.03936 1.01312 1.23855 1.01482 0.89551 0.87726 1.68204 1.07232 1.21821 1.26363 1.19127 0.88975 0.87612 0.87496 1.43304 1.12948 1.69913 1.10690 1.21018 0.98228 0.99495 0.92809 1.21083 0.99164 0.94432 0.97704 0.93310 0.92382 0.94315 0.77989 0.93511 0.86103 0.86493 0.90524 0.90453 0.74693 0.80770 0.80715 0.77022 0.72626 0.86310 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.47 37.16 0.35 -2.49 16 2 C 0.20 3.99 3.09 -69.08 -0.21 3.77 16 3 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 4 N -0.72 -17.68 5.07 -54.55 -0.28 -17.96 16 5 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 9 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 C -0.05 -0.88 4.95 -104.62 -0.52 -1.40 16 14 C -0.12 -1.76 9.67 -39.58 -0.38 -2.15 16 15 C -0.10 -1.28 9.70 -39.59 -0.38 -1.66 16 16 C -0.13 -1.66 5.25 -104.62 -0.55 -2.21 16 17 C 0.17 1.83 5.80 -5.20 -0.03 1.80 16 18 N -0.70 -8.00 5.54 -62.47 -0.35 -8.35 16 19 C 0.59 7.19 7.79 -12.38 -0.10 7.09 16 20 O -0.55 -7.22 13.65 5.31 0.07 -7.14 16 21 C -0.05 -0.64 6.77 -82.65 -0.56 -1.20 16 22 N -0.37 -4.07 9.71 -9.49 -0.09 -4.17 16 23 C -0.02 -0.18 11.21 -17.39 -0.19 -0.38 16 24 C 0.14 1.02 11.22 -17.26 -0.19 0.82 16 25 N -0.51 -5.02 10.52 -11.99 -0.13 -5.14 16 26 C 0.41 4.44 7.77 -154.87 -1.20 3.24 16 27 N -0.82 -7.34 8.93 31.32 0.28 -7.06 16 28 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 29 C -0.11 -1.75 9.06 -39.58 -0.36 -2.11 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.38 9.94 6.07 -40.82 -0.25 9.70 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.12 1.56 8.04 -52.49 -0.42 1.14 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.42 4.86 7.82 -40.82 -0.32 4.54 16 40 H 0.18 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 42 H 0.40 2.68 8.95 -40.82 -0.37 2.32 16 43 H 0.43 4.18 5.32 -40.96 -0.22 3.97 16 44 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 45 H 0.13 2.30 6.92 -52.49 -0.36 1.93 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -32.37 384.27 -9.65 -42.02 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -5.69 Total: 17.63 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -4.96 Total: -5.73 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: 0.16 Total: -69.67 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.07 Total: -7.14 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.37 -9.65 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.857 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds