Wall clock time and date at job start Sat Apr 11 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46573 * 2 1 4 4 N 1.46492 * 109.47171 * 119.99889 * 2 1 3 5 5 C 1.36943 * 120.00313 * 275.00143 * 4 2 1 6 6 H 1.07996 * 119.99487 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99705 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00547 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99513 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47208 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46912 * 120.00318 * 9 7 5 12 12 H 1.48506 * 109.46938 * 240.00337 * 9 7 5 13 13 C 1.50697 * 109.47054 * 240.00223 * 2 1 3 14 14 C 1.38240 * 120.00014 * 99.99771 * 13 2 1 15 15 C 1.38236 * 119.99807 * 180.02562 * 14 13 2 16 16 C 1.38227 * 120.00317 * 359.95638 * 15 14 13 17 17 C 1.50701 * 120.00429 * 180.02562 * 16 15 14 18 18 N 1.46495 * 109.47162 * 89.99822 * 17 16 15 19 19 C 1.34774 * 119.99875 * 180.02562 * 18 17 16 20 20 O 1.21568 * 120.00040 * 0.02562 * 19 18 17 21 21 C 1.47730 * 119.99842 * 180.02562 * 19 18 17 22 22 N 1.33019 * 120.16575 * 5.56440 * 21 19 18 23 23 C 1.31723 * 120.01084 * 179.97438 * 22 21 19 24 24 C 1.38802 * 120.34485 * 0.02562 * 23 22 21 25 25 N 1.32029 * 120.32727 * 0.02562 * 24 23 22 26 26 C 1.32833 * 119.97987 * 359.97438 * 25 24 23 27 27 N 1.38270 * 120.16625 * 179.97438 * 26 25 24 28 28 C 1.38246 * 119.99882 * 0.27951 * 16 15 14 29 29 C 1.38233 * 119.99983 * 280.02284 * 13 2 1 30 30 H 1.08994 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46830 * 299.99866 * 1 2 3 32 32 H 1.08998 * 109.46910 * 59.99727 * 1 2 3 33 33 H 0.97003 * 120.00158 * 94.99794 * 4 2 1 34 34 H 0.96998 * 120.00093 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.00027 * 0.02562 * 14 13 2 36 36 H 1.08001 * 119.99872 * 179.97438 * 15 14 13 37 37 H 1.09006 * 109.46777 * 329.99948 * 17 16 15 38 38 H 1.08996 * 109.47286 * 210.00442 * 17 16 15 39 39 H 0.97002 * 120.00189 * 0.02562 * 18 17 16 40 40 H 1.08004 * 119.82664 * 180.28257 * 23 22 21 41 41 H 1.08001 * 119.83582 * 179.97438 * 24 23 22 42 42 H 0.97001 * 120.00211 * 354.62053 * 27 26 25 43 43 H 0.97000 * 120.00117 * 174.62698 * 27 26 25 44 44 H 1.07998 * 120.00093 * 179.72778 * 28 16 15 45 45 H 1.07996 * 120.00168 * 359.97438 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3758 6 1 1.8919 1.0403 2.4243 7 6 2.6114 -0.6620 3.5092 8 7 2.9244 -1.9390 3.4501 9 14 2.7905 0.2701 5.1182 10 1 2.3765 1.6825 4.9208 11 1 1.9293 -0.3578 6.1524 12 1 4.2074 0.2262 5.5606 13 6 2.0324 -0.7103 -1.2305 14 6 2.4587 0.0196 -2.3243 15 6 2.9190 -0.6321 -3.4532 16 6 2.9538 -2.0135 -3.4880 17 6 3.4561 -2.7239 -4.7185 18 7 4.9013 -2.9347 -4.6049 19 6 5.5717 -3.5555 -5.5957 20 8 4.9772 -3.9400 -6.5838 21 6 7.0291 -3.7685 -5.4808 22 7 7.6647 -3.4498 -4.3566 23 6 8.9641 -3.6416 -4.2574 24 6 9.6775 -4.1752 -5.3217 25 7 9.0604 -4.4954 -6.4442 26 6 7.7504 -4.3075 -6.5583 27 7 7.1003 -4.6410 -7.7323 28 6 2.5228 -2.7435 -2.3960 29 6 2.0663 -2.0918 -1.2656 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2478 -2.3963 4.2421 35 1 2.4322 1.0989 -2.2969 36 1 3.2517 -0.0619 -4.3080 37 1 3.2455 -2.1176 -5.5995 38 1 2.9546 -3.6872 -4.8121 39 1 5.3758 -2.6275 -3.8166 40 1 9.4764 -3.3860 -3.3416 41 1 10.7427 -4.3286 -5.2316 42 1 7.6106 -4.9394 -8.5013 43 1 6.1340 -4.5764 -7.7868 44 1 2.5459 -3.8229 -2.4248 45 1 1.7333 -2.6621 -0.4110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754947896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:36 Heat of formation + Delta-G solvation = 32.089237 kcal Electronic energy + Delta-G solvation = -27859.700826 eV Core-core repulsion = 23876.472727 eV Total energy + Delta-G solvation = -3983.228100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.28687 -40.80251 -40.11296 -37.51778 -36.69683 -35.59533 -34.73051 -34.08488 -32.01450 -31.75921 -30.78021 -29.95010 -27.53153 -26.24269 -25.69334 -24.56012 -23.79481 -22.99847 -22.10611 -21.10779 -19.57607 -19.38579 -19.03837 -18.55553 -17.32552 -17.23158 -16.91568 -16.66021 -16.29675 -16.16432 -15.96056 -15.69085 -15.44399 -15.15759 -14.96736 -14.89023 -14.46219 -14.32879 -14.25443 -13.76947 -13.57116 -13.41317 -13.04389 -12.87325 -12.86338 -12.70685 -12.65989 -12.42923 -12.08550 -12.00632 -11.64119 -11.59960 -11.56919 -11.46356 -11.00714 -10.26364 -10.20701 -9.78428 -9.54392 -9.10386 -9.01448 -7.93109 -5.21497 -0.49644 0.26657 0.30547 0.54092 1.48262 1.48591 1.58567 1.61633 2.00872 2.45090 2.56946 2.82281 2.90366 3.14734 3.35562 3.41390 3.56979 3.66737 3.87797 3.99506 4.04571 4.12666 4.15601 4.24753 4.35987 4.47566 4.54499 4.59810 4.67039 4.77917 4.80126 5.01543 5.07068 5.12538 5.20812 5.22779 5.31068 5.42384 5.51893 5.56099 5.63356 5.84551 5.94862 6.10169 6.21211 6.29277 6.32128 6.53015 6.93873 7.09938 7.35372 8.09994 8.34074 9.30663 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.002220 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.799150 B =12610.352411 C =14187.419998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.199 3.801 3 H 0.055 0.945 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.295 1.295 12 H -0.294 1.294 13 C -0.073 4.073 14 C -0.121 4.121 15 C -0.092 4.092 16 C -0.118 4.118 17 C 0.170 3.830 18 N -0.696 5.696 19 C 0.585 3.415 20 O -0.567 6.567 21 C -0.086 4.086 22 N -0.391 5.391 23 C -0.023 4.023 24 C 0.152 3.848 25 N -0.525 5.525 26 C 0.400 3.600 27 N -0.812 5.812 28 C -0.098 4.098 29 C -0.124 4.124 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.374 0.626 34 H 0.250 0.750 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.415 0.585 40 H 0.204 0.796 41 H 0.219 0.781 42 H 0.410 0.590 43 H 0.425 0.575 44 H 0.131 0.869 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.027 -2.565 -23.376 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.091 3.909 3 H 0.073 0.927 4 N -0.376 5.376 5 C -0.368 4.368 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.800 3.200 10 H -0.190 1.190 11 H -0.223 1.223 12 H -0.222 1.222 13 C -0.074 4.074 14 C -0.140 4.140 15 C -0.110 4.110 16 C -0.118 4.118 17 C 0.047 3.953 18 N -0.345 5.345 19 C 0.372 3.628 20 O -0.448 6.448 21 C -0.232 4.232 22 N -0.107 5.107 23 C -0.190 4.190 24 C -0.014 4.014 25 N -0.249 5.249 26 C 0.156 3.844 27 N -0.363 5.363 28 C -0.116 4.116 29 C -0.142 4.142 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.252 0.748 40 H 0.221 0.779 41 H 0.236 0.764 42 H 0.241 0.759 43 H 0.269 0.731 44 H 0.149 0.851 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.347 -2.656 -24.022 25.913 hybrid contribution 0.163 -0.187 1.512 1.532 sum 9.510 -2.843 -22.510 24.601 Atomic orbital electron populations 1.22260 0.96822 1.00879 1.00927 1.19419 0.93017 0.94716 0.83756 0.92682 1.42732 1.78461 1.10456 1.05937 1.19669 1.34730 0.94293 0.88137 0.90471 1.25532 1.03040 0.96901 1.01396 1.69822 1.52719 1.10219 1.29304 0.85104 0.76724 0.78250 0.79880 1.18954 1.22270 1.22165 1.20331 0.97293 0.94179 0.95585 1.21195 0.99400 1.00672 0.92711 1.21221 0.98013 0.93557 0.98253 1.19742 1.02620 0.94042 0.95427 1.20227 0.79182 1.00471 0.95371 1.45863 1.09092 1.57858 1.21671 1.17682 0.85241 0.77249 0.82628 1.90379 1.68741 1.53876 1.31757 1.21058 0.95152 1.13218 0.93769 1.68059 1.11914 1.09326 1.21428 1.24074 0.89385 1.02922 1.02654 1.24603 1.03232 0.87131 0.86406 1.68312 1.06732 1.22351 1.27532 1.19277 0.89538 0.87806 0.87730 1.43250 1.12812 1.69527 1.10754 1.21131 0.97851 1.00264 0.92404 1.20961 1.00771 0.94483 0.98009 0.94134 0.93825 0.91175 0.79239 0.94116 0.84366 0.83501 0.89276 0.90237 0.74834 0.77918 0.76411 0.75938 0.73052 0.85137 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.47 71.98 0.68 -4.60 16 2 C 0.20 7.84 3.09 44.25 0.14 7.97 16 3 H 0.06 2.15 7.94 -2.39 -0.02 2.13 16 4 N -0.73 -36.94 5.07 -326.51 -1.66 -38.60 16 5 C -0.24 -13.04 9.93 84.03 0.83 -12.21 16 6 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 7 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 8 N -0.97 -59.39 13.06 21.65 0.28 -59.10 16 9 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 13 C -0.07 -2.47 4.95 -19.87 -0.10 -2.57 16 14 C -0.12 -3.30 9.67 22.27 0.22 -3.08 16 15 C -0.09 -2.10 9.70 22.27 0.22 -1.88 16 16 C -0.12 -2.75 5.25 -19.86 -0.10 -2.86 16 17 C 0.17 3.45 5.80 85.63 0.50 3.95 16 18 N -0.70 -15.23 5.54 -469.82 -2.60 -17.83 16 19 C 0.58 13.98 7.79 86.75 0.68 14.65 16 20 O -0.57 -14.55 13.65 -3.93 -0.05 -14.61 16 21 C -0.09 -1.95 6.77 42.01 0.28 -1.66 16 22 N -0.39 -8.19 9.71 -183.94 -1.79 -9.98 16 23 C -0.02 -0.32 11.21 84.84 0.95 0.63 16 24 C 0.15 1.79 11.22 84.80 0.95 2.74 16 25 N -0.53 -9.32 10.52 -191.86 -2.02 -11.34 16 26 C 0.40 8.28 7.77 133.50 1.04 9.31 16 27 N -0.81 -14.17 8.93 -54.83 -0.49 -14.66 16 28 C -0.10 -2.70 9.70 22.27 0.22 -2.49 16 29 C -0.12 -4.20 9.06 22.27 0.20 -4.00 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.37 20.21 6.07 -92.71 -0.56 19.64 16 34 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.14 3.22 8.04 -2.91 -0.02 3.19 16 36 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.09 1.64 8.09 -2.38 -0.02 1.62 16 38 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 39 H 0.41 9.32 7.82 -92.71 -0.73 8.60 16 40 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.22 0.48 8.06 -2.91 -0.02 0.45 16 42 H 0.41 5.22 8.95 -92.71 -0.83 4.39 16 43 H 0.42 8.21 5.32 -94.93 -0.51 7.70 16 44 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 45 H 0.10 3.97 6.92 -2.91 -0.02 3.95 16 Total: -1.00 -71.45 384.27 -0.68 -72.13 By element: Atomic # 1 Polarization: 47.46 SS G_CDS: -1.55 Total: 45.91 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 7.16 Total: -0.02 kcal Atomic # 7 Polarization: -143.25 SS G_CDS: -8.27 Total: -151.52 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.05 Total: -14.61 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -71.45 -0.68 -72.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.221 kcal (2) G-P(sol) polarization free energy of solvation -71.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds