Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47202 * 2 1 4 4 C 1.53001 * 109.47335 * 119.99848 * 2 1 3 5 5 N 1.46497 * 109.47106 * 174.99954 * 4 2 1 6 6 S 1.65601 * 119.99903 * 165.00190 * 5 4 2 7 7 O 1.42102 * 106.40167 * 178.54230 * 6 5 4 8 8 O 1.42096 * 106.40506 * 311.45883 * 6 5 4 9 9 N 1.65601 * 107.21936 * 65.00369 * 6 5 4 10 10 C 1.46501 * 119.99748 * 270.00041 * 9 6 5 11 11 C 1.46498 * 119.99866 * 89.99626 * 9 6 5 12 12 C 1.50706 * 109.47041 * 95.00419 * 11 9 6 13 13 H 1.08001 * 119.99929 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00045 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99959 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99799 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47141 * 90.00219 * 16 14 12 18 18 H 1.48501 * 109.46882 * 210.00347 * 16 14 12 19 19 H 1.48500 * 109.47260 * 329.99951 * 16 14 12 20 20 N 1.46503 * 109.47393 * 240.00334 * 2 1 3 21 21 C 1.46498 * 119.99555 * 304.49923 * 20 2 1 22 22 C 1.39670 * 119.99876 * 124.49587 * 20 2 1 23 23 C 1.38906 * 120.08054 * 354.12639 * 22 20 2 24 24 C 1.38098 * 119.92885 * 180.27597 * 23 22 20 25 25 C 1.38289 * 120.07651 * 359.51913 * 24 23 22 26 26 C 1.38291 * 120.14623 * 0.46339 * 25 24 23 27 27 C 1.38102 * 120.07224 * 359.78868 * 26 25 24 28 28 H 1.08997 * 109.46522 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47150 * 299.99682 * 1 2 3 30 30 H 1.08992 * 109.47225 * 59.99699 * 1 2 3 31 31 H 1.08993 * 109.47279 * 295.00407 * 4 2 1 32 32 H 1.08998 * 109.46724 * 55.00136 * 4 2 1 33 33 H 0.97000 * 120.00634 * 345.00781 * 5 4 2 34 34 H 1.08994 * 109.46859 * 89.99757 * 10 9 6 35 35 H 1.09001 * 109.46902 * 209.99633 * 10 9 6 36 36 H 1.09003 * 109.46960 * 329.99896 * 10 9 6 37 37 H 1.08997 * 109.47030 * 215.00038 * 11 9 6 38 38 H 1.09001 * 109.47558 * 335.00155 * 11 9 6 39 39 H 0.97007 * 119.99739 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46683 * 269.99249 * 21 20 2 41 41 H 1.08992 * 109.47478 * 29.99375 * 21 20 2 42 42 H 1.08998 * 109.47265 * 149.99956 * 21 20 2 43 43 H 1.07999 * 120.03422 * 0.02562 * 23 22 20 44 44 H 1.08005 * 119.96513 * 179.72969 * 24 23 22 45 45 H 1.07989 * 119.93113 * 180.21243 * 25 24 23 46 46 H 1.07995 * 119.96579 * 179.76664 * 26 25 24 47 47 H 1.08005 * 120.03640 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1905 6 16 4.3574 -1.2176 2.5522 7 8 5.7233 -1.2731 2.1642 8 8 3.8772 -0.3696 3.5863 9 7 3.9285 -2.7602 2.9752 10 6 2.8016 -2.9839 3.8842 11 6 4.6759 -3.9010 2.4404 12 6 5.7396 -4.3113 3.4260 13 1 5.8482 -3.7755 4.3575 14 6 6.5740 -5.3706 3.1387 15 7 6.4413 -6.0233 2.0047 16 14 7.8928 -5.8787 4.3602 17 1 7.3385 -6.8909 5.2946 18 1 9.0473 -6.4597 3.6289 19 1 8.3411 -4.6893 5.1279 20 7 2.0184 -0.6905 -1.1962 21 6 1.5850 -2.0611 -1.4789 22 6 2.8970 -0.0421 -2.0670 23 6 3.2134 1.2957 -1.8683 24 6 4.0781 1.9353 -2.7345 25 6 4.6367 1.2427 -3.7932 26 6 4.3242 -0.0894 -3.9938 27 6 3.4561 -0.7336 -3.1343 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -0.1583 2.1369 32 1 1.6054 -1.7197 1.2951 33 1 3.9646 -0.6667 0.3541 34 1 1.8826 -3.0818 3.3063 35 1 2.9709 -3.8969 4.4549 36 1 2.7128 -2.1393 4.5676 37 1 3.9947 -4.7352 2.2727 38 1 5.1439 -3.6189 1.4972 39 1 7.0287 -6.7684 1.8024 40 1 2.2762 -2.7639 -1.0136 41 1 0.5839 -2.2159 -1.0769 42 1 1.5728 -2.2233 -2.5567 43 1 2.7805 1.8362 -1.0395 44 1 4.3211 2.9767 -2.5831 45 1 5.3152 1.7442 -4.4671 46 1 4.7591 -0.6265 -4.8237 47 1 3.2121 -1.7739 -3.2918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045745388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = -57.353546 kcal Electronic energy + Delta-G solvation = -28931.538284 eV Core-core repulsion = 25047.582854 eV Total energy + Delta-G solvation = -3883.955430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.71621 -38.47253 -38.18491 -37.22684 -36.87286 -35.36759 -34.51690 -32.70991 -31.78414 -30.15838 -29.68236 -27.23248 -26.83483 -26.43680 -24.22930 -23.67160 -22.60150 -20.87558 -20.31828 -18.98984 -18.84910 -18.41506 -18.22336 -17.52472 -16.86860 -16.61587 -16.34921 -16.09459 -15.43368 -15.28101 -15.17222 -14.94750 -14.74950 -14.38944 -14.35126 -14.08323 -13.94467 -13.84073 -13.55777 -13.37747 -13.35217 -13.15762 -13.06151 -12.93268 -12.93213 -12.83704 -12.50137 -12.45786 -12.37476 -12.17388 -11.98211 -11.89827 -11.76661 -11.50952 -10.75617 -10.61918 -10.47215 -9.80033 -9.77561 -8.22237 -8.15771 -6.34266 -0.32960 0.58926 0.75381 1.37207 1.39975 1.50444 2.01399 2.21143 2.39216 2.63137 3.04214 3.08781 3.41831 3.74134 3.86820 4.02703 4.09106 4.17870 4.27165 4.34165 4.42008 4.45767 4.61888 4.66434 4.67667 4.73110 4.74826 4.78934 4.85157 4.86556 4.94687 5.02964 5.07046 5.09351 5.17629 5.21959 5.37029 5.43070 5.44787 5.67246 5.67916 5.80315 5.83113 6.03910 6.04880 6.10729 6.40781 6.62280 6.73945 7.34817 8.85305 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.003627 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.138721 B = 7718.934245 C = 8551.633784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.101 0.899 4 C 0.098 3.902 5 N -1.116 6.116 6 S 2.798 3.202 7 O -1.016 7.016 8 O -1.007 7.007 9 N -1.002 6.002 10 C 0.087 3.913 11 C 0.276 3.724 12 C -0.552 4.552 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.956 3.044 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.275 1.275 20 N -0.625 5.625 21 C 0.087 3.913 22 C 0.204 3.796 23 C -0.215 4.215 24 C -0.081 4.081 25 C -0.193 4.193 26 C -0.083 4.083 27 C -0.214 4.214 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.011 0.989 39 H 0.267 0.733 40 H 0.033 0.967 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.544 12.443 -9.491 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.118 0.882 4 C -0.029 4.029 5 N -0.879 5.879 6 S 2.806 3.194 7 O -1.000 7.000 8 O -0.990 6.990 9 N -0.844 5.844 10 C -0.058 4.058 11 C 0.153 3.847 12 C -0.591 4.591 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.781 3.219 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.200 1.200 20 N -0.335 5.335 21 C -0.055 4.055 22 C 0.102 3.898 23 C -0.237 4.237 24 C -0.100 4.100 25 C -0.213 4.213 26 C -0.102 4.102 27 C -0.236 4.236 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.112 12.705 -8.813 21.621 hybrid contribution 1.090 -0.846 -0.089 1.382 sum -14.022 11.859 -8.902 20.408 Atomic orbital electron populations 1.22085 0.91909 1.03638 1.03695 1.21369 0.95952 0.96862 0.82354 0.88161 1.22014 0.78140 1.02251 1.00489 1.55722 1.17132 1.87027 1.27972 1.01191 0.72149 0.72769 0.73323 1.93568 1.35381 1.87270 1.83828 1.93494 1.82414 1.66092 1.57029 1.57457 1.44002 1.23412 1.59513 1.21615 0.87476 1.03309 0.93386 1.18541 0.89879 0.83635 0.92673 1.21850 1.17320 1.15213 1.04759 0.93094 1.25735 0.99412 0.96179 0.97305 1.70008 1.40069 1.21943 1.24265 0.85592 0.78785 0.78484 0.79090 1.18819 1.20336 1.20037 1.46565 1.48754 1.14589 1.23623 1.21702 1.00461 0.81590 1.01779 1.18045 0.89853 0.91792 0.90081 1.20952 1.05408 0.93607 1.03736 1.21194 0.94820 1.00310 0.93674 1.21182 1.04201 0.95224 1.00702 1.21182 0.95672 0.94978 0.98343 1.20915 1.03681 1.00717 0.98286 0.91116 0.89508 0.91465 0.88673 0.90657 0.75175 0.90589 0.91192 0.90623 0.95242 0.97135 0.92359 0.94817 0.89225 0.90880 0.85028 0.84517 0.85041 0.84932 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.08 71.98 0.65 -1.08 16 2 C 0.14 2.38 2.81 44.99 0.13 2.51 16 3 H 0.10 1.68 5.31 -2.38 -0.01 1.67 16 4 C 0.10 2.08 5.62 86.38 0.49 2.57 16 5 N -1.12 -33.44 5.97 -187.50 -1.12 -34.56 16 6 S 2.80 112.62 6.10 -56.49 -0.34 112.28 16 7 O -1.02 -51.67 17.11 -128.00 -2.19 -53.86 16 8 O -1.01 -41.00 16.21 -128.00 -2.07 -43.07 16 9 N -1.00 -41.32 3.23 -543.22 -1.75 -43.07 16 10 C 0.09 2.81 10.68 127.77 1.36 4.17 16 11 C 0.28 14.18 5.08 85.64 0.43 14.62 16 12 C -0.55 -31.80 9.38 25.60 0.24 -31.56 16 13 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 14 C 0.01 0.76 5.46 84.65 0.46 1.23 16 15 N -0.92 -54.63 13.29 21.45 0.28 -54.34 16 16 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 N -0.62 -12.38 2.30 -698.08 -1.60 -13.98 16 21 C 0.09 1.57 9.39 127.77 1.20 2.77 16 22 C 0.20 4.70 5.95 38.22 0.23 4.93 16 23 C -0.21 -4.71 9.31 22.40 0.21 -4.50 16 24 C -0.08 -1.69 10.04 22.25 0.22 -1.47 16 25 C -0.19 -4.06 10.04 22.29 0.22 -3.84 16 26 C -0.08 -1.83 10.04 22.25 0.22 -1.61 16 27 C -0.21 -5.02 9.16 22.40 0.21 -4.82 16 28 H 0.07 0.72 6.53 -2.39 -0.02 0.70 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 1.85 7.75 -2.39 -0.02 1.83 16 32 H 0.08 1.46 7.94 -2.39 -0.02 1.44 16 33 H 0.41 12.71 7.58 -96.75 -0.73 11.98 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 36 H 0.08 2.28 7.02 -2.39 -0.02 2.26 16 37 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 38 H 0.01 0.60 7.61 -2.39 -0.02 0.58 16 39 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 40 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 1.20 6.20 -2.39 -0.01 1.19 16 42 H 0.07 1.20 6.46 -2.39 -0.02 1.19 16 43 H 0.13 2.49 5.75 -2.91 -0.02 2.47 16 44 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.13 2.21 8.06 -2.92 -0.02 2.19 16 46 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 47 H 0.12 2.73 6.31 -2.91 -0.02 2.71 16 Total: -1.00 -74.99 390.60 -0.26 -75.25 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.24 Total: 24.27 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 6.28 Total: -16.08 kcal Atomic # 7 Polarization: -141.77 SS G_CDS: -4.19 Total: -145.96 kcal Atomic # 8 Polarization: -92.67 SS G_CDS: -4.26 Total: -96.94 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 112.62 SS G_CDS: -0.34 Total: 112.28 kcal Total: -74.99 -0.26 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045745388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.895 kcal (2) G-P(sol) polarization free energy of solvation -74.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds