Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47275 * 2 1 4 4 C 1.37098 * 119.99821 * 262.97706 * 3 2 1 5 5 H 1.08002 * 120.00474 * 142.21450 * 4 3 2 6 6 C 1.38951 * 120.00457 * 322.21062 * 4 3 2 7 7 N 1.31409 * 120.00453 * 157.13194 * 6 4 3 8 8 Si 1.86803 * 119.99694 * 337.13806 * 6 4 3 9 9 H 1.48500 * 109.47056 * 95.19999 * 8 6 4 10 10 H 1.48502 * 109.47024 * 215.19969 * 8 6 4 11 11 H 1.48497 * 109.47275 * 335.20196 * 8 6 4 12 12 C 1.34778 * 120.00284 * 82.98064 * 3 2 1 13 13 O 1.21295 * 119.99964 * 180.02562 * 12 3 2 14 14 C 1.50695 * 119.99644 * 359.97438 * 12 3 2 15 15 C 1.53006 * 109.47071 * 180.02562 * 14 12 3 16 16 C 1.50701 * 109.47132 * 180.02562 * 15 14 12 17 17 C 1.40010 * 120.31198 * 90.00318 * 16 15 14 18 18 C 1.50701 * 119.93708 * 359.97205 * 17 16 15 19 19 N 1.31467 * 120.12833 * 179.97438 * 17 16 15 20 20 C 1.33419 * 120.85524 * 0.02562 * 19 17 16 21 21 C 1.40738 * 132.50240 * 179.97438 * 20 19 17 22 22 C 1.43200 * 126.52016 * 0.03886 * 21 20 19 23 23 N 9.74378 * 93.16363 * 260.64352 * 12 1 2 24 24 C 1.40567 * 106.95774 * 180.02562 * 21 20 19 25 25 N 1.30782 * 108.74601 * 359.97438 * 24 21 20 26 26 N 1.36718 * 120.77484 * 359.97438 * 20 19 17 27 27 C 1.35717 * 120.31161 * 269.97681 * 16 15 14 28 28 C 1.50700 * 120.42571 * 0.04186 * 27 16 15 29 29 H 1.08999 * 109.47088 * 300.00079 * 1 2 3 30 30 H 1.09003 * 109.46977 * 60.00226 * 1 2 3 31 31 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47527 * 239.99864 * 2 1 3 33 33 H 1.09003 * 109.46977 * 119.99774 * 2 1 3 34 34 H 0.97000 * 120.00020 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46952 * 60.00983 * 14 12 3 36 36 H 1.08998 * 109.47756 * 300.00695 * 14 12 3 37 37 H 1.08997 * 109.46833 * 60.00057 * 15 14 12 38 38 H 1.09007 * 109.46830 * 300.00571 * 15 14 12 39 39 H 1.08996 * 109.46932 * 269.98196 * 18 17 16 40 40 H 1.09003 * 109.46652 * 29.98520 * 18 17 16 41 41 H 1.09006 * 109.46803 * 149.97895 * 18 17 16 42 42 H 1.07999 * 125.62463 * 179.73608 * 24 21 20 43 43 H 1.09000 * 109.46965 * 90.00475 * 28 27 16 44 44 H 1.09001 * 109.47346 * 209.99547 * 28 27 16 45 45 H 1.09003 * 109.47337 * 330.00394 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3837 1.9790 -1.1784 5 1 2.1622 3.0227 -1.3459 6 6 3.0391 1.2422 -2.1574 7 7 2.9965 1.6317 -3.4117 8 14 3.9806 -0.3021 -1.6904 9 1 3.1112 -1.4900 -1.8857 10 1 5.1866 -0.4249 -2.5482 11 1 4.3926 -0.2190 -0.2661 12 6 2.1085 2.0641 1.1584 13 8 2.5124 3.2078 1.1583 14 6 1.7064 1.4070 2.4536 15 6 1.9034 2.3920 3.6078 16 6 1.5019 1.7347 4.9031 17 6 2.4448 1.0271 5.6585 18 6 3.8683 0.9203 5.1755 19 7 2.0907 0.4555 6.7882 20 6 0.8354 0.5380 7.2328 21 6 0.1984 0.0326 8.3814 22 6 0.8041 -0.7480 9.4180 23 7 1.2852 -1.3665 10.2411 24 6 -1.1454 0.4400 8.3178 25 7 -1.3221 1.1367 7.2252 26 7 -0.1143 1.2199 6.5241 27 6 0.2231 1.8237 5.3488 28 6 -0.8111 2.5791 4.5545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.4537 1.1171 -4.0951 35 1 2.3234 0.5240 2.6199 36 1 0.6580 1.1133 2.4020 37 1 1.2862 3.2748 3.4413 38 1 2.9518 2.6861 3.6596 39 1 3.9741 0.0342 4.5498 40 1 4.1226 1.8074 4.5953 41 1 4.5377 0.8423 6.0322 42 1 -1.9072 0.2118 9.0485 43 1 -1.2978 1.9008 3.8537 44 1 -1.5557 2.9970 5.2321 45 1 -0.3279 3.3859 4.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 113.516539 kcal Electronic energy + Delta-G solvation = -29338.641644 eV Core-core repulsion = 25358.944497 eV Total energy + Delta-G solvation = -3979.697147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.92597 -39.55771 -38.75642 -36.54574 -35.82719 -35.30707 -34.08648 -32.42037 -31.38941 -30.38362 -29.83272 -28.95729 -28.16650 -25.94164 -24.17379 -23.09132 -22.99584 -22.32629 -21.74876 -19.17948 -18.88922 -17.89908 -17.27434 -16.98736 -16.74684 -16.20692 -15.76054 -15.21747 -14.87209 -14.42284 -14.27232 -14.06620 -13.88959 -13.85290 -13.56435 -13.41999 -13.30216 -13.22281 -13.05303 -12.88224 -12.70211 -12.52891 -12.45123 -12.31957 -12.18067 -12.02291 -11.79876 -11.61824 -11.44507 -11.13450 -11.03907 -10.89181 -10.71685 -10.22159 -10.14440 -9.95692 -9.68070 -9.17987 -8.65143 -8.24431 -7.86423 -6.49058 -4.05746 -0.00536 0.41304 1.48249 1.76367 2.58041 2.74522 2.94947 3.14348 3.17227 3.27197 3.47169 3.52626 3.59323 3.80242 4.04525 4.13714 4.19751 4.39791 4.47469 4.71890 4.81026 4.89612 4.94820 5.03700 5.06112 5.12532 5.17727 5.26764 5.34795 5.37089 5.45308 5.46788 5.60379 5.71700 5.73107 5.77583 5.82059 5.85443 6.03052 6.05829 6.15109 6.22427 6.30284 6.61810 6.91349 7.20855 7.44771 7.54754 8.19343 8.39659 8.86772 9.22558 9.65634 10.62829 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002776 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.605128 B =10082.469017 C =10490.521785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 N -0.463 5.463 4 C -0.317 4.317 5 H 0.105 0.895 6 C 0.061 3.939 7 N -0.860 5.860 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.264 1.264 12 C 0.464 3.536 13 O -0.566 6.566 14 C -0.136 4.136 15 C -0.053 4.053 16 C -0.176 4.176 17 C 0.240 3.760 18 C -0.120 4.120 19 N -0.480 5.480 20 C 0.328 3.672 21 C -0.207 4.207 22 C 0.306 3.694 23 N -0.440 5.440 24 C 0.148 3.852 25 N -0.307 5.307 26 N -0.301 5.301 27 C 0.204 3.796 28 C -0.126 4.126 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.274 0.726 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.209 0.791 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 -2.553 16.035 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.039 4.039 3 N -0.184 5.184 4 C -0.444 4.444 5 H 0.123 0.877 6 C -0.145 4.145 7 N -0.496 5.496 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.188 1.188 12 C 0.252 3.748 13 O -0.448 6.448 14 C -0.177 4.177 15 C -0.092 4.092 16 C -0.182 4.182 17 C 0.080 3.920 18 C -0.177 4.177 19 N -0.194 5.194 20 C 0.093 3.907 21 C -0.225 4.225 22 C -0.009 4.009 23 N -0.118 5.118 24 C -0.036 4.036 25 N -0.128 5.128 26 N -0.069 5.069 27 C 0.088 3.912 28 C -0.183 4.183 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.623 -2.807 17.049 18.504 hybrid contribution 0.281 -0.916 -0.238 0.988 sum -6.342 -3.723 16.811 18.349 Atomic orbital electron populations 1.22140 0.96307 1.01066 1.02584 1.21811 0.94646 0.85850 1.01593 1.43774 1.56829 1.11389 1.06422 1.19006 1.37219 0.98513 0.89669 0.87747 1.25363 0.96271 0.98113 0.94727 1.69764 1.39899 1.40197 0.99759 0.87026 0.80418 0.82853 0.79726 1.20250 1.21273 1.18776 1.20088 0.82540 0.87910 0.84231 1.90570 1.49675 1.18179 1.86377 1.21721 1.02939 0.99276 0.93738 1.20370 1.04496 0.97676 0.86638 1.20443 0.91284 1.04909 1.01541 1.22042 0.97428 0.85748 0.86749 1.21064 0.88572 1.05088 1.02932 1.68070 1.12882 1.23016 1.15407 1.20326 0.85205 0.92743 0.92470 1.14992 0.93623 1.17541 0.96329 1.24074 0.93114 0.91870 0.91792 1.81260 1.07380 1.11936 1.11197 1.24018 0.94328 0.91003 0.94222 1.77634 0.99397 1.27274 1.08487 1.46841 1.09673 1.34601 1.15748 1.20696 0.95665 0.91840 0.82987 1.21166 0.96747 1.00563 0.99789 0.93074 0.91372 0.92681 0.90606 0.92315 0.91535 0.89919 0.89919 0.88845 0.88428 0.88353 0.88294 0.89220 0.77476 0.88227 0.89094 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.11 37.16 0.38 -2.01 16 2 C 0.08 1.50 4.46 -4.05 -0.02 1.48 16 3 N -0.46 -9.96 2.18 -114.81 -0.25 -10.21 16 4 C -0.32 -8.31 9.35 -14.93 -0.14 -8.45 16 5 H 0.10 3.11 7.92 -52.49 -0.42 2.70 16 6 C 0.06 1.60 5.24 -17.47 -0.09 1.51 16 7 N -0.86 -23.69 13.96 55.50 0.77 -22.91 16 8 Si 0.87 19.22 25.12 -169.99 -4.27 14.95 16 9 H -0.28 -5.67 6.67 56.52 0.38 -5.29 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 12 C 0.46 9.08 7.57 -10.99 -0.08 9.00 16 13 O -0.57 -13.13 15.85 5.54 0.09 -13.04 16 14 C -0.14 -1.78 4.29 -27.88 -0.12 -1.90 16 15 C -0.05 -0.58 3.84 -27.88 -0.11 -0.69 16 16 C -0.18 -1.77 5.11 -104.86 -0.54 -2.30 16 17 C 0.24 2.53 6.83 -82.08 -0.56 1.96 16 18 C -0.12 -0.99 9.81 36.01 0.35 -0.64 16 19 N -0.48 -5.99 10.39 -8.22 -0.09 -6.07 16 20 C 0.33 4.04 7.88 -155.71 -1.23 2.82 16 21 C -0.21 -2.32 6.03 -106.15 -0.64 -2.96 16 22 C 0.31 3.88 15.84 -22.46 -0.36 3.53 16 23 N -0.44 -6.39 18.54 41.85 0.78 -5.62 16 24 C 0.15 1.27 11.93 -17.12 -0.20 1.07 16 25 N -0.31 -3.18 12.40 30.76 0.38 -2.80 16 26 N -0.30 -3.37 3.87 -8.24 -0.03 -3.40 16 27 C 0.20 2.03 6.85 -81.48 -0.56 1.47 16 28 C -0.13 -0.97 9.68 36.01 0.35 -0.62 16 29 H 0.05 0.65 6.38 -51.93 -0.33 0.32 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.48 3.72 -51.93 -0.19 1.28 16 33 H 0.06 0.87 6.74 -51.93 -0.35 0.52 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.08 0.98 7.42 -51.93 -0.39 0.59 16 36 H 0.08 0.94 6.35 -51.93 -0.33 0.61 16 37 H 0.09 1.01 5.92 -51.93 -0.31 0.71 16 38 H 0.10 1.08 5.98 -51.93 -0.31 0.77 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.75 6.01 -51.93 -0.31 0.44 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.21 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 45 H 0.11 0.76 5.96 -51.93 -0.31 0.45 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -33.28 375.60 -5.88 -39.17 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.36 Total: 1.01 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -3.56 Total: 3.26 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 1.56 Total: -51.01 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.27 Total: 14.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.28 -5.88 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.684 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds