Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47275 * 2 1 4 4 C 1.37098 * 119.99821 * 262.97706 * 3 2 1 5 5 H 1.08002 * 120.00474 * 142.21450 * 4 3 2 6 6 C 1.38951 * 120.00457 * 322.21062 * 4 3 2 7 7 N 1.31409 * 120.00453 * 157.13194 * 6 4 3 8 8 Si 1.86803 * 119.99694 * 337.13806 * 6 4 3 9 9 H 1.48500 * 109.47056 * 95.19999 * 8 6 4 10 10 H 1.48502 * 109.47024 * 215.19969 * 8 6 4 11 11 H 1.48497 * 109.47275 * 335.20196 * 8 6 4 12 12 C 1.34778 * 120.00284 * 82.98064 * 3 2 1 13 13 O 1.21295 * 119.99964 * 180.02562 * 12 3 2 14 14 C 1.50695 * 119.99644 * 359.97438 * 12 3 2 15 15 C 1.53006 * 109.47071 * 180.02562 * 14 12 3 16 16 C 1.50701 * 109.47132 * 180.02562 * 15 14 12 17 17 C 1.40010 * 120.31198 * 90.00318 * 16 15 14 18 18 C 1.50701 * 119.93708 * 359.97205 * 17 16 15 19 19 N 1.31467 * 120.12833 * 179.97438 * 17 16 15 20 20 C 1.33419 * 120.85524 * 0.02562 * 19 17 16 21 21 C 1.40738 * 132.50240 * 179.97438 * 20 19 17 22 22 C 1.43200 * 126.52016 * 0.03886 * 21 20 19 23 23 N 9.74378 * 93.16363 * 260.64352 * 12 1 2 24 24 C 1.40567 * 106.95774 * 180.02562 * 21 20 19 25 25 N 1.30782 * 108.74601 * 359.97438 * 24 21 20 26 26 N 1.36718 * 120.77484 * 359.97438 * 20 19 17 27 27 C 1.35717 * 120.31161 * 269.97681 * 16 15 14 28 28 C 1.50700 * 120.42571 * 0.04186 * 27 16 15 29 29 H 1.08999 * 109.47088 * 300.00079 * 1 2 3 30 30 H 1.09003 * 109.46977 * 60.00226 * 1 2 3 31 31 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47527 * 239.99864 * 2 1 3 33 33 H 1.09003 * 109.46977 * 119.99774 * 2 1 3 34 34 H 0.97000 * 120.00020 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46952 * 60.00983 * 14 12 3 36 36 H 1.08998 * 109.47756 * 300.00695 * 14 12 3 37 37 H 1.08997 * 109.46833 * 60.00057 * 15 14 12 38 38 H 1.09007 * 109.46830 * 300.00571 * 15 14 12 39 39 H 1.08996 * 109.46932 * 269.98196 * 18 17 16 40 40 H 1.09003 * 109.46652 * 29.98520 * 18 17 16 41 41 H 1.09006 * 109.46803 * 149.97895 * 18 17 16 42 42 H 1.07999 * 125.62463 * 179.73608 * 24 21 20 43 43 H 1.09000 * 109.46965 * 90.00475 * 28 27 16 44 44 H 1.09001 * 109.47346 * 209.99547 * 28 27 16 45 45 H 1.09003 * 109.47337 * 330.00394 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3837 1.9790 -1.1784 5 1 2.1622 3.0227 -1.3459 6 6 3.0391 1.2422 -2.1574 7 7 2.9965 1.6317 -3.4117 8 14 3.9806 -0.3021 -1.6904 9 1 3.1112 -1.4900 -1.8857 10 1 5.1866 -0.4249 -2.5482 11 1 4.3926 -0.2190 -0.2661 12 6 2.1085 2.0641 1.1584 13 8 2.5124 3.2078 1.1583 14 6 1.7064 1.4070 2.4536 15 6 1.9034 2.3920 3.6078 16 6 1.5019 1.7347 4.9031 17 6 2.4448 1.0271 5.6585 18 6 3.8683 0.9203 5.1755 19 7 2.0907 0.4555 6.7882 20 6 0.8354 0.5380 7.2328 21 6 0.1984 0.0326 8.3814 22 6 0.8041 -0.7480 9.4180 23 7 1.2852 -1.3665 10.2411 24 6 -1.1454 0.4400 8.3178 25 7 -1.3221 1.1367 7.2252 26 7 -0.1143 1.2199 6.5241 27 6 0.2231 1.8237 5.3488 28 6 -0.8111 2.5791 4.5545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.4537 1.1171 -4.0951 35 1 2.3234 0.5240 2.6199 36 1 0.6580 1.1133 2.4020 37 1 1.2862 3.2748 3.4413 38 1 2.9518 2.6861 3.6596 39 1 3.9741 0.0342 4.5498 40 1 4.1226 1.8074 4.5953 41 1 4.5377 0.8423 6.0322 42 1 -1.9072 0.2118 9.0485 43 1 -1.2978 1.9008 3.8537 44 1 -1.5557 2.9970 5.2321 45 1 -0.3279 3.3859 4.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = 92.993882 kcal Electronic energy + Delta-G solvation = -29339.531573 eV Core-core repulsion = 25358.944497 eV Total energy + Delta-G solvation = -3980.587076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.70553 -40.77911 -39.87261 -37.51273 -37.09807 -36.48573 -35.00255 -34.24965 -32.26442 -31.36182 -31.13423 -29.76581 -28.92371 -27.31916 -25.45285 -24.38202 -23.81794 -23.22044 -22.57997 -20.43717 -19.95455 -18.79718 -18.73299 -18.14719 -17.61286 -17.56130 -17.29146 -16.37466 -15.78106 -15.62995 -15.20297 -14.96168 -14.89970 -14.77107 -14.69117 -14.59569 -14.33889 -14.23488 -14.10936 -13.97405 -13.82882 -13.78248 -13.51399 -13.27978 -13.03590 -12.98989 -12.88999 -12.75617 -12.61244 -12.47884 -12.30770 -11.96367 -11.85228 -11.70059 -11.47029 -11.00592 -10.95122 -10.50693 -10.23806 -9.63978 -9.07840 -8.46437 -6.06647 -0.77356 -0.38600 0.72093 1.01934 1.23204 1.36149 1.47068 1.64187 1.92795 2.04774 2.21849 2.52308 2.56752 2.72621 2.80072 3.02238 3.08845 3.32617 3.52095 3.73923 3.87520 4.05317 4.10346 4.14839 4.22990 4.25766 4.31809 4.38945 4.48474 4.52082 4.56837 4.64479 4.69296 4.72819 4.75301 4.96266 5.00446 5.04926 5.08371 5.15142 5.16181 5.31284 5.43295 5.44921 5.60264 6.12257 6.17014 6.41740 6.60906 6.62646 7.02944 7.41060 7.96867 8.70778 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002776 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.605128 B =10082.469017 C =10490.521785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.076 3.924 3 N -0.480 5.480 4 C -0.326 4.326 5 H 0.044 0.956 6 C 0.010 3.990 7 N -0.913 5.913 8 Si 0.942 3.058 9 H -0.246 1.246 10 H -0.295 1.295 11 H -0.249 1.249 12 C 0.464 3.536 13 O -0.610 6.610 14 C -0.124 4.124 15 C -0.045 4.045 16 C -0.175 4.175 17 C 0.241 3.759 18 C -0.122 4.122 19 N -0.508 5.508 20 C 0.315 3.685 21 C -0.225 4.225 22 C 0.325 3.675 23 N -0.481 5.481 24 C 0.169 3.831 25 N -0.318 5.318 26 N -0.308 5.308 27 C 0.209 3.791 28 C -0.126 4.126 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.277 0.723 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.250 0.750 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -4.732 18.086 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.046 4.046 3 N -0.202 5.202 4 C -0.454 4.454 5 H 0.062 0.938 6 C -0.192 4.192 7 N -0.551 5.551 8 Si 0.765 3.235 9 H -0.171 1.171 10 H -0.222 1.222 11 H -0.172 1.172 12 C 0.254 3.746 13 O -0.495 6.495 14 C -0.163 4.163 15 C -0.084 4.084 16 C -0.181 4.181 17 C 0.083 3.917 18 C -0.178 4.178 19 N -0.222 5.222 20 C 0.079 3.921 21 C -0.243 4.243 22 C 0.011 3.989 23 N -0.159 5.159 24 C -0.015 4.015 25 N -0.138 5.138 26 N -0.075 5.075 27 C 0.093 3.907 28 C -0.183 4.183 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.266 0.734 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.742 -4.997 19.110 21.216 hybrid contribution 0.542 -0.081 -0.859 1.020 sum -7.200 -5.078 18.251 20.266 Atomic orbital electron populations 1.22103 0.94150 1.03128 1.02174 1.22065 0.96583 0.83406 1.02574 1.43930 1.57714 1.13070 1.05451 1.18592 1.38091 0.96524 0.92209 0.93767 1.26136 0.96729 1.02144 0.94160 1.69893 1.41481 1.42633 1.01101 0.85929 0.78502 0.79335 0.79701 1.17090 1.22243 1.17242 1.21182 0.80517 0.87148 0.85728 1.90551 1.51094 1.20457 1.87372 1.21688 1.04773 0.99794 0.90084 1.20233 1.04579 0.97253 0.86314 1.20203 0.91384 1.05357 1.01161 1.22354 0.98286 0.84880 0.86155 1.21173 0.87470 1.05843 1.03329 1.68109 1.13266 1.24424 1.16426 1.20555 0.85558 0.93020 0.92974 1.15153 0.94765 1.18303 0.96055 1.24250 0.92191 0.91124 0.91335 1.81270 1.08588 1.13505 1.12586 1.24672 0.93976 0.88905 0.93949 1.77641 0.99187 1.27909 1.09047 1.46971 1.09717 1.34735 1.16044 1.21056 0.96110 0.90951 0.82600 1.21277 0.96399 1.00711 0.99865 0.90927 0.94423 0.89312 0.92447 0.88236 0.91339 0.87469 0.87280 0.88830 0.88653 0.87164 0.87684 0.88870 0.73448 0.86894 0.88631 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 10.11 71.98 0.73 -3.38 16 2 C 0.08 2.45 4.46 86.38 0.39 2.84 16 3 N -0.48 -20.27 2.18 -635.55 -1.39 -21.65 16 4 C -0.33 -17.76 9.35 84.04 0.79 -16.97 16 5 H 0.04 2.86 7.92 -2.91 -0.02 2.84 16 6 C 0.01 0.54 5.24 84.93 0.45 0.98 16 7 N -0.91 -52.51 13.96 21.66 0.30 -52.20 16 8 Si 0.94 39.18 25.12 68.60 1.72 40.90 16 9 H -0.25 -9.01 6.67 99.48 0.66 -8.34 16 10 H -0.30 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 12 C 0.46 17.57 7.57 87.66 0.66 18.23 16 13 O -0.61 -28.66 15.85 -3.08 -0.05 -28.71 16 14 C -0.12 -2.78 4.29 29.85 0.13 -2.65 16 15 C -0.05 -0.87 3.84 29.85 0.11 -0.76 16 16 C -0.18 -3.02 5.11 -20.02 -0.10 -3.12 16 17 C 0.24 4.50 6.83 43.04 0.29 4.80 16 18 C -0.12 -1.71 9.81 71.24 0.70 -1.02 16 19 N -0.51 -11.74 10.39 -179.92 -1.87 -13.61 16 20 C 0.31 7.13 7.88 133.91 1.06 8.18 16 21 C -0.22 -4.60 6.03 -20.85 -0.13 -4.72 16 22 C 0.32 7.84 15.84 88.33 1.40 9.24 16 23 N -0.48 -13.67 18.54 19.01 0.35 -13.32 16 24 C 0.17 2.39 11.93 85.42 1.02 3.41 16 25 N -0.32 -5.63 12.40 -56.59 -0.70 -6.33 16 26 N -0.31 -6.08 3.87 -179.98 -0.70 -6.77 16 27 C 0.21 3.55 6.85 41.27 0.28 3.83 16 28 C -0.13 -1.55 9.68 71.24 0.69 -0.86 16 29 H 0.07 1.55 6.38 -2.39 -0.02 1.54 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 2.07 3.72 -2.38 -0.01 2.06 16 33 H 0.10 2.39 6.74 -2.39 -0.02 2.37 16 34 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.11 1.98 7.42 -2.39 -0.02 1.96 16 36 H 0.11 1.94 6.35 -2.39 -0.02 1.93 16 37 H 0.09 1.83 5.92 -2.39 -0.01 1.81 16 38 H 0.10 1.92 5.98 -2.38 -0.01 1.90 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 1.35 6.01 -2.39 -0.01 1.34 16 41 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.25 1.08 8.06 -2.91 -0.02 1.05 16 43 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16 45 H 0.11 1.28 5.96 -2.39 -0.01 1.27 16 Total: -1.00 -78.35 375.60 7.15 -71.20 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.01 Total: 12.46 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 8.46 Total: 18.03 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -4.00 Total: -113.89 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.05 Total: -28.71 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.72 Total: 40.90 kcal Total: -78.35 7.15 -71.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.198 kcal (2) G-P(sol) polarization free energy of solvation -78.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds