Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47236 * 2 1 4 4 C 1.46499 * 119.99813 * 270.00007 * 3 2 1 5 5 C 1.52997 * 109.47174 * 269.99513 * 4 3 2 6 6 C 1.39005 * 119.99747 * 89.99880 * 3 2 1 7 7 C 1.39137 * 119.70915 * 5.00395 * 6 3 2 8 8 C 1.38297 * 119.09602 * 180.02562 * 7 6 3 9 9 C 1.38884 * 118.50559 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.33263 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47244 * 90.00166 * 10 9 8 12 12 S 1.65599 * 120.00146 * 164.99927 * 11 10 9 13 13 O 1.42105 * 104.27655 * 308.92954 * 12 11 10 14 14 O 1.42101 * 104.27764 * 181.07391 * 12 11 10 15 15 C 1.81395 * 104.44748 * 65.00260 * 12 11 10 16 16 C 1.52999 * 109.46986 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47535 * 180.02562 * 16 15 12 18 18 H 1.08006 * 119.99840 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00463 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47395 * 89.99885 * 21 19 17 23 23 H 1.48504 * 109.47218 * 209.99622 * 21 19 17 24 24 H 1.48500 * 109.47369 * 329.99411 * 21 19 17 25 25 C 1.38016 * 119.33178 * 0.27956 * 9 8 7 26 26 N 1.31978 * 120.85404 * 359.45267 * 25 9 8 27 27 H 1.08998 * 109.46859 * 299.99920 * 1 2 3 28 28 H 1.09003 * 109.47051 * 60.00115 * 1 2 3 29 29 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46967 * 239.99555 * 2 1 3 31 31 H 1.09003 * 109.47051 * 119.99885 * 2 1 3 32 32 H 1.08993 * 109.47289 * 29.99955 * 4 3 2 33 33 H 1.09005 * 109.46938 * 149.99893 * 4 3 2 34 34 H 1.08999 * 109.47936 * 300.00754 * 5 4 3 35 35 H 1.09005 * 109.46878 * 60.00343 * 5 4 3 36 36 H 1.09004 * 109.47151 * 179.97438 * 5 4 3 37 37 H 1.08000 * 120.44878 * 0.02562 * 7 6 3 38 38 H 1.08001 * 120.74637 * 179.97438 * 8 7 6 39 39 H 1.09006 * 109.46832 * 330.00152 * 10 9 8 40 40 H 1.08999 * 109.46759 * 210.00732 * 10 9 8 41 41 H 0.97001 * 119.99851 * 345.00453 * 11 10 9 42 42 H 1.09003 * 109.47393 * 299.99669 * 15 12 11 43 43 H 1.08994 * 109.47678 * 60.00285 * 15 12 11 44 44 H 1.09004 * 109.47080 * 299.99725 * 16 15 12 45 45 H 1.09005 * 109.47285 * 59.99790 * 16 15 12 46 46 H 0.96996 * 119.99792 * 180.02562 * 20 19 17 47 47 H 1.08002 * 119.57625 * 179.69787 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8314 -1.7104 6 6 2.2500 2.0364 1.2038 7 6 2.1168 1.3433 2.4029 8 6 2.3497 2.0078 3.5932 9 6 2.7101 3.3482 3.5446 10 6 2.9742 4.1119 4.8166 11 7 4.3918 3.9992 5.1686 12 16 5.0501 5.0228 6.2916 13 8 4.6694 6.3188 5.8502 14 8 6.4178 4.6423 6.3534 15 6 4.2020 4.6026 7.8390 16 6 4.7290 5.4918 8.9671 17 6 4.0249 5.1424 10.2529 18 1 3.2760 4.3642 10.2643 19 6 4.3359 5.8168 11.4145 20 7 5.2475 6.7647 11.4006 21 14 3.4626 5.3841 13.0081 22 1 4.2213 4.3215 13.7156 23 1 3.3793 6.5904 13.8702 24 1 2.0930 4.8966 12.7054 25 6 2.8188 3.9750 2.3198 26 7 2.5955 3.3145 1.1992 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 4.3884 2.2154 -0.9508 35 1 3.8745 0.7621 -1.8407 36 1 3.8891 2.3448 -2.6546 37 1 1.8352 0.3007 2.4041 38 1 2.2536 1.4959 4.5393 39 1 2.3660 3.6988 5.6213 40 1 2.7185 5.1613 4.6699 41 1 4.9448 3.3249 4.7437 42 1 3.1303 4.7630 7.7212 43 1 4.3882 3.5568 8.0832 44 1 5.8008 5.3319 9.0852 45 1 4.5424 6.5376 8.7228 46 1 5.4665 7.2389 12.2180 47 1 3.0940 5.0185 2.2775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111329406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = -41.120123 kcal Electronic energy + Delta-G solvation = -26919.206686 eV Core-core repulsion = 23035.955190 eV Total energy + Delta-G solvation = -3883.251495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64627 -37.80620 -36.55018 -35.47342 -35.24245 -33.87486 -33.05156 -31.94478 -31.31916 -31.14226 -28.80397 -25.61553 -25.57366 -24.62982 -23.19577 -22.59955 -21.64810 -20.74000 -18.91248 -17.89624 -17.46767 -17.03833 -16.68447 -16.11532 -15.72368 -15.39455 -15.26936 -14.86488 -14.70181 -14.53306 -14.18741 -14.06417 -13.79330 -13.54577 -13.32542 -13.22207 -13.12224 -12.88152 -12.52429 -12.45221 -12.12799 -12.09521 -11.73324 -11.55055 -11.54060 -11.46755 -11.33515 -11.25713 -11.07375 -10.94589 -10.40943 -10.36596 -10.20706 -9.92027 -9.80740 -9.61448 -9.40656 -8.99002 -8.49315 -7.80583 -6.11414 -4.16879 0.76772 1.11370 1.25017 2.56410 3.21414 3.26561 3.32826 3.35401 3.75623 4.20902 4.28123 4.39102 4.47150 4.61128 4.64041 4.69141 4.75310 4.82248 4.86977 4.91806 4.98855 5.02936 5.11154 5.23737 5.23968 5.31128 5.35683 5.41722 5.45491 5.63477 5.66662 5.68957 5.70830 5.71976 5.83620 5.90778 5.97823 6.17762 6.39040 6.51043 6.67244 7.10038 7.13465 7.32074 7.38422 7.81530 7.95090 8.18840 8.86516 9.47742 10.99583 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.002056 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.378625 B =13615.513241 C =14490.117661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 N -0.609 5.609 4 C 0.124 3.876 5 C -0.166 4.166 6 C 0.405 3.595 7 C -0.243 4.243 8 C -0.017 4.017 9 C -0.208 4.208 10 C 0.169 3.831 11 N -1.125 6.125 12 S 2.593 3.407 13 O -0.967 6.967 14 O -0.968 6.968 15 C -0.590 4.590 16 C 0.027 3.973 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.168 3.832 26 N -0.542 5.542 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.412 0.588 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.265 0.735 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 -14.698 -25.123 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.003 4.003 3 N -0.323 5.323 4 C 0.001 3.999 5 C -0.225 4.225 6 C 0.171 3.829 7 C -0.267 4.267 8 C -0.044 4.044 9 C -0.214 4.214 10 C 0.042 3.958 11 N -0.882 5.882 12 S 2.691 3.309 13 O -0.956 6.956 14 O -0.958 6.958 15 C -0.723 4.723 16 C -0.012 4.012 17 C -0.559 4.559 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C 0.010 3.990 26 N -0.258 5.258 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.245 0.755 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.815 -13.428 -26.114 30.659 hybrid contribution -0.757 -1.405 1.840 2.436 sum -9.572 -14.833 -24.273 30.014 Atomic orbital electron populations 1.22235 0.96065 1.02151 1.02679 1.21457 0.94143 0.81713 1.02997 1.46530 1.70002 1.12974 1.02784 1.21327 0.95857 0.98743 0.83979 1.22151 0.97516 1.01378 1.01466 1.18383 0.90079 0.88559 0.85866 1.21413 1.12162 1.01397 0.91777 1.21293 0.91817 0.93179 0.98079 1.20507 1.09129 0.95633 0.96123 1.19958 0.81515 1.00569 0.93721 1.55914 1.18360 1.54372 1.59568 1.05534 0.74809 0.74046 0.76541 1.93538 1.84113 1.38189 1.79799 1.93553 1.32067 1.83250 1.86969 1.30447 1.12871 1.11102 1.17916 1.18965 0.97376 0.93735 0.91096 1.21003 1.22411 1.20135 0.92370 0.92068 1.25075 0.95216 0.94907 0.99371 1.69956 1.31410 1.23048 1.28396 0.86469 0.79896 0.77969 0.82917 1.20505 1.21032 1.19791 1.22443 0.91006 0.99353 0.86192 1.67233 1.19732 1.07302 1.31532 0.92220 0.92407 0.91545 0.90443 0.90392 0.91431 0.89471 0.92251 0.93085 0.91851 0.85099 0.84678 0.90986 0.89397 0.75482 0.86301 0.86140 0.94857 0.94777 0.92547 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.24 37.16 0.38 -0.46 16 2 C 0.12 0.64 5.97 -4.04 -0.02 0.62 16 3 N -0.61 -4.83 2.59 -173.84 -0.45 -5.28 16 4 C 0.12 0.89 6.19 -4.04 -0.03 0.86 16 5 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 6 C 0.41 4.09 7.37 -155.02 -1.14 2.95 16 7 C -0.24 -2.17 9.27 -39.23 -0.36 -2.53 16 8 C -0.02 -0.16 9.85 -39.32 -0.39 -0.54 16 9 C -0.21 -2.14 5.29 -104.46 -0.55 -2.69 16 10 C 0.17 1.84 6.28 -5.19 -0.03 1.80 16 11 N -1.12 -14.22 5.88 -11.66 -0.07 -14.29 16 12 S 2.59 45.25 5.46 -107.50 -0.59 44.66 16 13 O -0.97 -19.61 17.50 -57.54 -1.01 -20.61 16 14 O -0.97 -20.02 18.08 -57.54 -1.04 -21.06 16 15 C -0.59 -10.96 6.01 37.16 0.22 -10.74 16 16 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 17 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.17 1.85 10.85 -17.57 -0.19 1.66 16 26 N -0.54 -6.19 9.08 -12.44 -0.11 -6.30 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.31 8.07 -51.93 -0.42 -0.10 16 31 H 0.08 0.38 5.98 -51.93 -0.31 0.07 16 32 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.09 0.76 7.30 -51.93 -0.38 0.38 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.13 0.90 6.03 -52.49 -0.32 0.58 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.09 0.97 7.64 -51.93 -0.40 0.58 16 41 H 0.41 4.67 8.61 -34.47 -0.30 4.37 16 42 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 43 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 44 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 47 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -35.92 403.20 -11.33 -47.25 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.57 Total: 1.51 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -2.28 Total: -22.37 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.11 Total: -51.58 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -2.05 Total: -41.68 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 45.25 SS G_CDS: -0.59 Total: 44.66 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.92 -11.33 -47.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.129 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds