Wall clock time and date at job start Sat Apr 11 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47236 * 2 1 4 4 C 1.46499 * 119.99813 * 270.00007 * 3 2 1 5 5 C 1.52997 * 109.47174 * 269.99513 * 4 3 2 6 6 C 1.39005 * 119.99747 * 89.99880 * 3 2 1 7 7 C 1.39137 * 119.70915 * 5.00395 * 6 3 2 8 8 C 1.38297 * 119.09602 * 180.02562 * 7 6 3 9 9 C 1.38884 * 118.50559 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.33263 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47244 * 90.00166 * 10 9 8 12 12 S 1.65599 * 120.00146 * 164.99927 * 11 10 9 13 13 O 1.42105 * 104.27655 * 308.92954 * 12 11 10 14 14 O 1.42101 * 104.27764 * 181.07391 * 12 11 10 15 15 C 1.81395 * 104.44748 * 65.00260 * 12 11 10 16 16 C 1.52999 * 109.46986 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47535 * 180.02562 * 16 15 12 18 18 H 1.08006 * 119.99840 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00463 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47395 * 89.99885 * 21 19 17 23 23 H 1.48504 * 109.47218 * 209.99622 * 21 19 17 24 24 H 1.48500 * 109.47369 * 329.99411 * 21 19 17 25 25 C 1.38016 * 119.33178 * 0.27956 * 9 8 7 26 26 N 1.31978 * 120.85404 * 359.45267 * 25 9 8 27 27 H 1.08998 * 109.46859 * 299.99920 * 1 2 3 28 28 H 1.09003 * 109.47051 * 60.00115 * 1 2 3 29 29 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46967 * 239.99555 * 2 1 3 31 31 H 1.09003 * 109.47051 * 119.99885 * 2 1 3 32 32 H 1.08993 * 109.47289 * 29.99955 * 4 3 2 33 33 H 1.09005 * 109.46938 * 149.99893 * 4 3 2 34 34 H 1.08999 * 109.47936 * 300.00754 * 5 4 3 35 35 H 1.09005 * 109.46878 * 60.00343 * 5 4 3 36 36 H 1.09004 * 109.47151 * 179.97438 * 5 4 3 37 37 H 1.08000 * 120.44878 * 0.02562 * 7 6 3 38 38 H 1.08001 * 120.74637 * 179.97438 * 8 7 6 39 39 H 1.09006 * 109.46832 * 330.00152 * 10 9 8 40 40 H 1.08999 * 109.46759 * 210.00732 * 10 9 8 41 41 H 0.97001 * 119.99851 * 345.00453 * 11 10 9 42 42 H 1.09003 * 109.47393 * 299.99669 * 15 12 11 43 43 H 1.08994 * 109.47678 * 60.00285 * 15 12 11 44 44 H 1.09004 * 109.47080 * 299.99725 * 16 15 12 45 45 H 1.09005 * 109.47285 * 59.99790 * 16 15 12 46 46 H 0.96996 * 119.99792 * 180.02562 * 20 19 17 47 47 H 1.08002 * 119.57625 * 179.69787 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8314 -1.7104 6 6 2.2500 2.0364 1.2038 7 6 2.1168 1.3433 2.4029 8 6 2.3497 2.0078 3.5932 9 6 2.7101 3.3482 3.5446 10 6 2.9742 4.1119 4.8166 11 7 4.3918 3.9992 5.1686 12 16 5.0501 5.0228 6.2916 13 8 4.6694 6.3188 5.8502 14 8 6.4178 4.6423 6.3534 15 6 4.2020 4.6026 7.8390 16 6 4.7290 5.4918 8.9671 17 6 4.0249 5.1424 10.2529 18 1 3.2760 4.3642 10.2643 19 6 4.3359 5.8168 11.4145 20 7 5.2475 6.7647 11.4006 21 14 3.4626 5.3841 13.0081 22 1 4.2213 4.3215 13.7156 23 1 3.3793 6.5904 13.8702 24 1 2.0930 4.8966 12.7054 25 6 2.8188 3.9750 2.3198 26 7 2.5955 3.3145 1.1992 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 4.3884 2.2154 -0.9508 35 1 3.8745 0.7621 -1.8407 36 1 3.8891 2.3448 -2.6546 37 1 1.8352 0.3007 2.4041 38 1 2.2536 1.4959 4.5393 39 1 2.3660 3.6988 5.6213 40 1 2.7185 5.1613 4.6699 41 1 4.9448 3.3249 4.7437 42 1 3.1303 4.7630 7.7212 43 1 4.3882 3.5568 8.0832 44 1 5.8008 5.3319 9.0852 45 1 4.5424 6.5376 8.7228 46 1 5.4665 7.2389 12.2180 47 1 3.0940 5.0185 2.2775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111329406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:16 Heat of formation + Delta-G solvation = -65.548667 kcal Electronic energy + Delta-G solvation = -26920.265987 eV Core-core repulsion = 23035.955190 eV Total energy + Delta-G solvation = -3884.310797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34913 -38.45747 -38.07468 -36.96261 -36.24378 -35.85434 -33.66368 -33.08221 -32.61444 -31.99317 -29.46077 -27.55096 -26.39267 -25.23060 -23.79936 -23.55274 -23.28599 -21.37106 -20.27032 -19.08362 -18.55641 -18.22031 -17.73252 -17.45055 -16.96481 -16.50875 -16.31181 -16.15251 -15.84640 -15.47392 -15.09638 -14.86531 -14.67205 -14.50677 -14.36927 -14.21612 -13.94906 -13.79007 -13.67667 -13.40412 -13.27762 -13.13856 -13.04013 -12.90701 -12.88599 -12.74582 -12.61374 -12.33325 -12.19501 -12.09309 -11.87179 -11.85240 -11.70261 -11.15774 -10.90228 -10.63200 -10.62068 -10.45868 -10.15012 -8.46060 -8.23306 -6.36953 -0.63800 0.34893 0.50569 1.42690 1.44453 1.55468 1.97202 2.00507 2.40138 2.87496 2.98909 3.10185 3.34259 3.58194 3.81907 3.94510 4.06845 4.09800 4.13859 4.19892 4.23393 4.27037 4.29600 4.50137 4.51568 4.55257 4.56823 4.68905 4.81564 4.83801 4.91089 4.95831 4.96809 4.99321 5.07194 5.17213 5.29493 5.32187 5.33465 5.36560 5.45175 5.69625 5.71681 6.09313 6.10703 6.15707 6.44427 6.77211 7.23399 7.33014 8.88845 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.002056 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.378625 B =13615.513241 C =14490.117661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.610 5.610 4 C 0.122 3.878 5 C -0.159 4.159 6 C 0.391 3.609 7 C -0.243 4.243 8 C -0.016 4.016 9 C -0.213 4.213 10 C 0.162 3.838 11 N -1.105 6.105 12 S 2.621 3.379 13 O -0.997 6.997 14 O -1.003 7.003 15 C -0.586 4.586 16 C 0.018 3.982 17 C -0.536 4.536 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.935 5.935 21 Si 0.974 3.026 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.256 1.256 25 C 0.152 3.848 26 N -0.565 5.565 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.422 0.578 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.005 0.995 45 H 0.007 0.993 46 H 0.266 0.734 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 -17.617 -25.522 33.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.007 4.007 3 N -0.323 5.323 4 C -0.001 4.001 5 C -0.217 4.217 6 C 0.156 3.844 7 C -0.268 4.268 8 C -0.042 4.042 9 C -0.220 4.220 10 C 0.036 3.964 11 N -0.866 5.866 12 S 2.718 3.282 13 O -0.987 6.987 14 O -0.993 6.993 15 C -0.718 4.718 16 C -0.021 4.021 17 C -0.575 4.575 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.180 1.180 25 C -0.006 4.006 26 N -0.283 5.283 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.257 0.743 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.023 0.977 45 H 0.025 0.975 46 H 0.075 0.925 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.864 -16.373 -26.530 33.015 hybrid contribution -0.155 -0.551 1.798 1.887 sum -11.019 -16.925 -24.732 31.930 Atomic orbital electron populations 1.22179 0.95647 1.02972 1.01715 1.21672 0.94391 0.80390 1.04207 1.46785 1.69380 1.13821 1.02303 1.21359 0.96491 0.97838 0.84365 1.22076 0.96678 1.01911 1.01062 1.18746 0.89978 0.88434 0.87199 1.21677 1.11467 1.02384 0.91235 1.21577 0.90808 0.92612 0.99197 1.20404 1.10056 0.96265 0.95229 1.20212 0.80183 1.00897 0.95076 1.55429 1.19529 1.53758 1.57919 1.04423 0.73740 0.73636 0.76419 1.93498 1.84385 1.40546 1.80295 1.93499 1.34539 1.83743 1.87555 1.30323 1.14406 1.10930 1.16177 1.18836 0.96002 0.93799 0.93441 1.21536 1.22536 1.20192 0.93240 0.90410 1.26138 0.95997 0.94752 1.03617 1.70109 1.33322 1.24539 1.29495 0.85307 0.79278 0.77686 0.77932 1.19716 1.21061 1.18006 1.22547 0.91642 0.99623 0.86751 1.67218 1.20804 1.08348 1.31885 0.93695 0.92822 0.89810 0.88763 0.89656 0.89274 0.91440 0.94862 0.92140 0.90788 0.82890 0.82319 0.88321 0.89886 0.74274 0.83580 0.83740 0.97706 0.97453 0.92500 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 71.98 0.74 -0.51 16 2 C 0.12 0.94 5.97 86.38 0.52 1.46 16 3 N -0.61 -8.79 2.59 -703.90 -1.82 -10.61 16 4 C 0.12 1.64 6.19 86.38 0.53 2.17 16 5 C -0.16 -2.05 10.24 71.98 0.74 -1.31 16 6 C 0.39 7.48 7.37 133.06 0.98 8.46 16 7 C -0.24 -3.80 9.27 22.50 0.21 -3.59 16 8 C -0.02 -0.25 9.85 22.44 0.22 -0.03 16 9 C -0.21 -4.06 5.29 -19.76 -0.10 -4.17 16 10 C 0.16 3.21 6.28 85.64 0.54 3.75 16 11 N -1.11 -26.29 5.88 -190.79 -1.12 -27.41 16 12 S 2.62 90.90 5.46 -56.49 -0.31 90.59 16 13 O -1.00 -40.98 17.50 -127.65 -2.23 -43.21 16 14 O -1.00 -41.91 18.08 -127.65 -2.31 -44.22 16 15 C -0.59 -21.11 6.01 71.98 0.43 -20.68 16 16 C 0.02 0.93 4.98 29.85 0.15 1.08 16 17 C -0.54 -29.30 9.11 25.60 0.23 -29.07 16 18 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 19 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 20 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 21 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 25 C 0.15 3.34 10.85 84.62 0.92 4.26 16 26 N -0.57 -12.91 9.08 -193.26 -1.75 -14.67 16 27 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.48 8.07 -2.39 -0.02 0.46 16 31 H 0.09 0.58 5.98 -2.39 -0.01 0.56 16 32 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 33 H 0.07 1.18 7.30 -2.38 -0.02 1.16 16 34 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.15 1.62 6.03 -2.91 -0.02 1.60 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.10 1.47 8.09 -2.38 -0.02 1.45 16 40 H 0.08 1.76 7.64 -2.39 -0.02 1.74 16 41 H 0.42 8.86 8.61 -96.74 -0.83 8.02 16 42 H 0.15 4.42 8.14 -2.39 -0.02 4.40 16 43 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 44 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 46 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 47 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -79.55 403.20 -0.55 -80.10 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.13 Total: 19.12 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 6.56 Total: -38.10 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -4.41 Total: -109.31 kcal Atomic # 8 Polarization: -82.89 SS G_CDS: -4.54 Total: -87.44 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 90.90 SS G_CDS: -0.31 Total: 90.59 kcal Total: -79.55 -0.55 -80.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.548 kcal (2) G-P(sol) polarization free energy of solvation -79.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds