Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47437 * 2 1 4 4 C 1.36934 * 119.99950 * 264.49107 * 3 2 1 5 5 H 1.07996 * 120.00446 * 323.46245 * 4 3 2 6 6 C 1.38820 * 119.99698 * 143.46287 * 4 3 2 7 7 N 1.31625 * 119.99722 * 156.19548 * 6 4 3 8 8 Si 1.86797 * 120.00103 * 336.19687 * 6 4 3 9 9 H 1.48502 * 109.47232 * 95.22846 * 8 6 4 10 10 H 1.48502 * 109.46950 * 215.22558 * 8 6 4 11 11 H 1.48499 * 109.47163 * 335.22411 * 8 6 4 12 12 C 1.46507 * 119.99983 * 84.48637 * 3 2 1 13 13 C 1.50697 * 109.46790 * 90.00166 * 12 3 2 14 14 N 1.30450 * 126.42724 * 87.61479 * 13 12 3 15 15 N 1.28530 * 110.10876 * 179.97438 * 14 13 12 16 16 C 1.31478 * 109.89590 * 359.97438 * 15 14 13 17 17 N 1.36460 * 106.78499 * 0.02562 * 16 15 14 18 18 C 1.38906 * 120.92926 * 179.97438 * 17 16 15 19 19 C 1.38672 * 121.31175 * 180.02562 * 18 17 16 20 20 C 1.38060 * 119.87377 * 179.97438 * 19 18 17 21 21 C 1.38607 * 120.60087 * 0.02562 * 20 19 18 22 22 C 1.50706 * 119.83046 * 180.02562 * 21 20 19 23 23 C 1.37894 * 120.34819 * 0.02562 * 21 20 19 24 24 C 1.39358 * 119.60151 * 359.97438 * 23 21 20 25 25 C 1.47426 * 121.32819 * 180.02562 * 24 23 21 26 26 O 1.21640 * 120.57125 * 359.95135 * 25 24 23 27 27 N 1.34933 * 118.85984 * 179.97438 * 25 24 23 28 28 C 1.46495 * 119.51455 * 180.02562 * 27 25 24 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47413 * 300.00166 * 1 2 3 31 31 H 1.09005 * 109.46850 * 59.99697 * 1 2 3 32 32 H 1.09002 * 109.47413 * 239.99834 * 2 1 3 33 33 H 1.09005 * 109.46850 * 120.00303 * 2 1 3 34 34 H 0.96993 * 119.99843 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.46881 * 330.00825 * 12 3 2 36 36 H 1.08992 * 109.47169 * 210.00202 * 12 3 2 37 37 H 1.08001 * 120.06058 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.70213 * 179.97438 * 20 19 18 39 39 H 1.09008 * 109.46488 * 269.98174 * 22 21 20 40 40 H 1.08997 * 109.47061 * 29.97215 * 22 21 20 41 41 H 1.08997 * 109.47210 * 149.98213 * 22 21 20 42 42 H 1.07995 * 120.20047 * 180.02562 * 23 21 20 43 43 H 1.08997 * 109.47597 * 269.97993 * 28 27 25 44 44 H 1.09000 * 109.46745 * 29.98232 * 28 27 25 45 45 H 1.09003 * 109.46795 * 149.97737 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3540 1.9887 -1.1804 5 1 2.8259 1.4180 -1.9665 6 6 2.0876 3.3383 -1.3667 7 7 2.7856 4.0324 -2.2405 8 14 0.7386 4.1693 -0.3772 9 1 1.3312 4.8196 0.8191 10 1 0.0687 5.1945 -1.2171 11 1 -0.2566 3.1544 0.0529 12 6 2.1477 2.1124 1.2629 13 6 3.5253 1.8917 1.8324 14 7 4.5938 2.5922 1.5690 15 7 5.5974 2.1318 2.2269 16 6 5.2218 1.1026 2.9537 17 7 3.8893 0.9214 2.7214 18 6 3.1877 -0.1002 3.3487 19 6 1.8338 -0.2919 3.1180 20 6 1.1657 -1.3172 3.7571 21 6 1.8359 -2.1597 4.6303 22 6 1.0896 -3.2738 5.3181 23 6 3.1819 -1.9839 4.8729 24 6 3.8675 -0.9525 4.2339 25 6 5.3065 -0.7304 4.4649 26 8 5.9292 -1.4479 5.2245 27 7 5.9209 0.2829 3.8195 28 6 7.3506 0.5162 4.0380 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.5992 4.9753 -2.3709 35 1 1.4004 1.7518 1.9696 36 1 1.9948 3.1766 1.0838 37 1 1.3032 0.3592 2.4391 38 1 0.1112 -1.4637 3.5758 39 1 0.6870 -2.9114 6.2641 40 1 0.2722 -3.6112 4.6809 41 1 1.7698 -4.1043 5.5070 42 1 3.7017 -2.6419 5.5533 43 1 7.4830 1.2057 4.8717 44 1 7.8422 -0.4294 4.2669 45 1 7.7903 0.9457 3.1378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121034427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = 130.022904 kcal Electronic energy + Delta-G solvation = -30981.480844 eV Core-core repulsion = 27002.499467 eV Total energy + Delta-G solvation = -3978.981377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.36767 -40.62089 -39.19071 -36.76416 -36.36552 -35.17248 -32.23806 -31.90275 -31.69344 -31.04870 -29.11159 -27.84898 -27.18125 -26.45926 -24.01801 -23.90179 -23.03905 -22.94432 -20.93742 -20.35264 -19.54436 -18.69266 -17.37536 -17.10370 -16.92194 -16.43926 -15.64270 -15.49520 -15.33024 -15.21138 -14.53912 -14.45043 -14.27461 -14.19790 -13.87264 -13.42774 -13.31086 -12.78170 -12.69560 -12.63111 -12.51785 -12.46253 -12.32688 -12.11674 -11.61079 -11.56495 -11.29613 -11.04342 -11.02766 -10.81454 -10.69479 -10.61741 -10.31293 -10.25289 -9.92682 -9.70958 -9.44095 -8.66038 -8.57368 -8.16501 -7.20619 -6.10665 -3.53814 0.31137 0.66193 1.82981 1.88824 2.42686 2.52340 3.14762 3.23087 3.36192 3.39223 3.49755 3.82831 4.09963 4.38800 4.39626 4.48485 4.63067 4.77752 4.82982 4.91409 4.94285 5.05109 5.20740 5.26329 5.27863 5.29006 5.30711 5.48543 5.52084 5.60421 5.63027 5.63817 5.77341 5.89666 5.98771 6.01763 6.06356 6.12139 6.23124 6.23866 6.25245 6.38604 6.56296 6.64325 6.82131 7.09520 7.52837 7.82692 8.23729 8.74675 8.97448 9.54153 9.84760 11.03770 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011875 B = 0.005077 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.253782 B = 5514.069460 C = 7322.819002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.581 5.581 4 C -0.281 4.281 5 H 0.082 0.918 6 C 0.053 3.947 7 N -0.876 5.876 8 Si 0.858 3.142 9 H -0.279 1.279 10 H -0.294 1.294 11 H -0.263 1.263 12 C 0.202 3.798 13 C 0.203 3.797 14 N -0.239 5.239 15 N -0.289 5.289 16 C 0.377 3.623 17 N -0.440 5.440 18 C 0.181 3.819 19 C -0.147 4.147 20 C -0.056 4.056 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.028 4.028 24 C -0.163 4.163 25 C 0.568 3.432 26 O -0.510 6.510 27 N -0.506 5.506 28 C 0.084 3.916 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.158 0.842 38 H 0.141 0.859 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.147 0.853 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 -12.862 15.735 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.007 3.993 3 N -0.301 5.301 4 C -0.409 4.409 5 H 0.100 0.900 6 C -0.151 4.151 7 N -0.514 5.514 8 Si 0.687 3.313 9 H -0.207 1.207 10 H -0.221 1.221 11 H -0.187 1.187 12 C 0.073 3.927 13 C -0.065 4.065 14 N -0.074 5.074 15 N -0.135 5.135 16 C 0.024 3.976 17 N -0.132 5.132 18 C 0.083 3.917 19 C -0.166 4.166 20 C -0.075 4.075 21 C -0.108 4.108 22 C -0.168 4.168 23 C -0.048 4.048 24 C -0.169 4.169 25 C 0.358 3.642 26 O -0.384 6.384 27 N -0.235 5.235 28 C -0.057 4.057 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.175 0.825 38 H 0.159 0.841 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.164 0.836 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.290 -11.953 15.330 19.574 hybrid contribution -1.240 -0.199 0.846 1.514 sum -3.530 -12.151 16.176 20.538 Atomic orbital electron populations 1.22333 0.98725 0.99837 1.02028 1.21172 0.92343 0.85820 0.99929 1.44224 1.73058 1.11534 1.01297 1.18691 1.36055 0.93829 0.92293 0.90046 1.25366 0.96983 0.96522 0.96191 1.69883 1.37128 1.08017 1.36337 0.87209 0.84599 0.79666 0.79805 1.20707 1.22115 1.18707 1.20373 0.84180 0.99992 0.88180 1.27316 1.02231 0.86360 0.90571 1.74389 0.94543 1.21788 1.16729 1.74731 1.22226 1.07215 1.09310 1.21485 0.81199 0.96470 0.98451 1.44048 1.08559 1.25259 1.35337 1.17852 0.92542 0.87910 0.93411 1.21469 0.91799 1.00946 1.02396 1.21197 1.00413 0.92412 0.93493 1.19978 0.93622 0.98456 0.98699 1.20789 1.00057 0.95665 1.00319 1.20881 0.93280 0.94357 0.96242 1.19466 0.93286 1.00625 1.03477 1.18010 0.86995 0.79255 0.79909 1.90828 1.66771 1.45281 1.35545 1.44209 1.11542 1.27830 1.39875 1.21976 0.76385 1.03519 1.03805 0.93606 0.93947 0.91870 0.92037 0.94319 0.92294 0.91492 0.88557 0.82459 0.84079 0.90768 0.90964 0.91104 0.83559 0.90919 0.89036 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.09 37.16 0.37 -2.21 16 2 C 0.13 2.36 5.80 -4.04 -0.02 2.33 16 3 N -0.58 -12.74 2.08 -174.61 -0.36 -13.10 16 4 C -0.28 -7.43 9.88 -15.06 -0.15 -7.58 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.05 1.45 5.28 -17.43 -0.09 1.36 16 7 N -0.88 -25.95 13.97 55.49 0.78 -25.17 16 8 Si 0.86 20.38 25.11 -169.99 -4.27 16.11 16 9 H -0.28 -6.54 6.64 56.52 0.38 -6.16 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 12 C 0.20 4.19 4.57 -5.19 -0.02 4.16 16 13 C 0.20 4.31 7.70 -154.08 -1.19 3.13 16 14 N -0.24 -5.68 12.18 32.98 0.40 -5.28 16 15 N -0.29 -6.21 11.99 30.29 0.36 -5.85 16 16 C 0.38 7.09 8.28 -319.06 -2.64 4.45 16 17 N -0.44 -8.16 3.01 -58.27 -0.18 -8.33 16 18 C 0.18 2.77 6.65 -83.67 -0.56 2.22 16 19 C -0.15 -1.89 7.34 -39.49 -0.29 -2.18 16 20 C -0.06 -0.54 9.67 -39.51 -0.38 -0.92 16 21 C -0.11 -0.96 5.88 -104.61 -0.61 -1.58 16 22 C -0.11 -0.65 10.00 36.01 0.36 -0.29 16 23 C -0.03 -0.31 9.29 -39.29 -0.36 -0.68 16 24 C -0.16 -2.30 5.88 -104.91 -0.62 -2.92 16 25 C 0.57 8.76 7.64 -12.45 -0.10 8.66 16 26 O -0.51 -8.15 16.10 5.24 0.08 -8.06 16 27 N -0.51 -8.02 3.06 -125.29 -0.38 -8.40 16 28 C 0.08 1.04 10.35 59.84 0.62 1.66 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.60 7.76 -51.93 -0.40 0.20 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.14 8.00 -51.93 -0.42 0.73 16 33 H 0.04 0.62 5.11 -51.93 -0.27 0.36 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.07 1.15 5.19 -51.93 -0.27 0.88 16 36 H 0.10 2.21 3.24 -51.93 -0.17 2.04 16 37 H 0.16 2.15 2.65 -52.49 -0.14 2.01 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 40 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 42 H 0.15 1.41 7.76 -52.49 -0.41 1.00 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.01 7.41 -51.93 -0.38 0.62 16 45 H 0.09 1.15 7.87 -51.93 -0.41 0.74 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -32.90 360.81 -9.21 -42.11 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.40 Total: 0.92 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: -5.68 Total: 9.62 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: 0.62 Total: -66.14 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.27 Total: 16.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.90 -9.21 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121034427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.132 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds