Wall clock time and date at job start Sat Apr 11 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47437 * 2 1 4 4 C 1.36934 * 119.99950 * 264.49107 * 3 2 1 5 5 H 1.07996 * 120.00446 * 323.46245 * 4 3 2 6 6 C 1.38820 * 119.99698 * 143.46287 * 4 3 2 7 7 N 1.31625 * 119.99722 * 156.19548 * 6 4 3 8 8 Si 1.86797 * 120.00103 * 336.19687 * 6 4 3 9 9 H 1.48502 * 109.47232 * 95.22846 * 8 6 4 10 10 H 1.48502 * 109.46950 * 215.22558 * 8 6 4 11 11 H 1.48499 * 109.47163 * 335.22411 * 8 6 4 12 12 C 1.46507 * 119.99983 * 84.48637 * 3 2 1 13 13 C 1.50697 * 109.46790 * 90.00166 * 12 3 2 14 14 N 1.30450 * 126.42724 * 87.61479 * 13 12 3 15 15 N 1.28530 * 110.10876 * 179.97438 * 14 13 12 16 16 C 1.31478 * 109.89590 * 359.97438 * 15 14 13 17 17 N 1.36460 * 106.78499 * 0.02562 * 16 15 14 18 18 C 1.38906 * 120.92926 * 179.97438 * 17 16 15 19 19 C 1.38672 * 121.31175 * 180.02562 * 18 17 16 20 20 C 1.38060 * 119.87377 * 179.97438 * 19 18 17 21 21 C 1.38607 * 120.60087 * 0.02562 * 20 19 18 22 22 C 1.50706 * 119.83046 * 180.02562 * 21 20 19 23 23 C 1.37894 * 120.34819 * 0.02562 * 21 20 19 24 24 C 1.39358 * 119.60151 * 359.97438 * 23 21 20 25 25 C 1.47426 * 121.32819 * 180.02562 * 24 23 21 26 26 O 1.21640 * 120.57125 * 359.95135 * 25 24 23 27 27 N 1.34933 * 118.85984 * 179.97438 * 25 24 23 28 28 C 1.46495 * 119.51455 * 180.02562 * 27 25 24 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47413 * 300.00166 * 1 2 3 31 31 H 1.09005 * 109.46850 * 59.99697 * 1 2 3 32 32 H 1.09002 * 109.47413 * 239.99834 * 2 1 3 33 33 H 1.09005 * 109.46850 * 120.00303 * 2 1 3 34 34 H 0.96993 * 119.99843 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.46881 * 330.00825 * 12 3 2 36 36 H 1.08992 * 109.47169 * 210.00202 * 12 3 2 37 37 H 1.08001 * 120.06058 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.70213 * 179.97438 * 20 19 18 39 39 H 1.09008 * 109.46488 * 269.98174 * 22 21 20 40 40 H 1.08997 * 109.47061 * 29.97215 * 22 21 20 41 41 H 1.08997 * 109.47210 * 149.98213 * 22 21 20 42 42 H 1.07995 * 120.20047 * 180.02562 * 23 21 20 43 43 H 1.08997 * 109.47597 * 269.97993 * 28 27 25 44 44 H 1.09000 * 109.46745 * 29.98232 * 28 27 25 45 45 H 1.09003 * 109.46795 * 149.97737 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3540 1.9887 -1.1804 5 1 2.8259 1.4180 -1.9665 6 6 2.0876 3.3383 -1.3667 7 7 2.7856 4.0324 -2.2405 8 14 0.7386 4.1693 -0.3772 9 1 1.3312 4.8196 0.8191 10 1 0.0687 5.1945 -1.2171 11 1 -0.2566 3.1544 0.0529 12 6 2.1477 2.1124 1.2629 13 6 3.5253 1.8917 1.8324 14 7 4.5938 2.5922 1.5690 15 7 5.5974 2.1318 2.2269 16 6 5.2218 1.1026 2.9537 17 7 3.8893 0.9214 2.7214 18 6 3.1877 -0.1002 3.3487 19 6 1.8338 -0.2919 3.1180 20 6 1.1657 -1.3172 3.7571 21 6 1.8359 -2.1597 4.6303 22 6 1.0896 -3.2738 5.3181 23 6 3.1819 -1.9839 4.8729 24 6 3.8675 -0.9525 4.2339 25 6 5.3065 -0.7304 4.4649 26 8 5.9292 -1.4479 5.2245 27 7 5.9209 0.2829 3.8195 28 6 7.3506 0.5162 4.0380 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.5992 4.9753 -2.3709 35 1 1.4004 1.7518 1.9696 36 1 1.9948 3.1766 1.0838 37 1 1.3032 0.3592 2.4391 38 1 0.1112 -1.4637 3.5758 39 1 0.6870 -2.9114 6.2641 40 1 0.2722 -3.6112 4.6809 41 1 1.7698 -4.1043 5.5070 42 1 3.7017 -2.6419 5.5533 43 1 7.4830 1.2057 4.8717 44 1 7.8422 -0.4294 4.2669 45 1 7.7903 0.9457 3.1378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121034427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:19 Heat of formation + Delta-G solvation = 112.246293 kcal Electronic energy + Delta-G solvation = -30982.251695 eV Core-core repulsion = 27002.499467 eV Total energy + Delta-G solvation = -3979.752229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.80739 -41.81875 -40.22321 -38.36627 -37.64789 -36.36702 -34.09512 -33.03158 -32.70574 -32.43370 -30.66137 -28.90681 -28.43255 -27.72286 -25.69835 -24.97732 -24.29969 -24.11807 -22.25740 -21.86706 -20.78507 -19.91629 -19.05276 -18.38247 -18.32184 -17.72652 -17.26064 -16.77294 -16.57838 -16.24423 -16.03883 -15.56901 -15.39087 -15.32404 -15.07417 -14.82094 -14.55272 -14.29870 -14.04807 -13.70163 -13.63824 -13.52912 -13.21097 -13.14929 -13.01507 -12.74747 -12.63280 -12.50273 -12.39464 -12.19136 -12.12018 -11.99556 -11.93497 -11.62572 -11.60660 -11.32072 -10.66650 -10.37277 -9.69951 -9.51473 -9.03500 -8.20138 -5.61958 -0.70007 -0.35641 0.53514 0.61167 1.23011 1.27712 1.33504 1.43369 1.53751 1.68019 2.42777 2.49747 2.70267 2.88321 2.99153 3.25670 3.32425 3.46344 3.52614 3.70512 3.93116 4.05054 4.09590 4.15100 4.28487 4.29942 4.31766 4.38257 4.50459 4.61601 4.68723 4.71058 4.74003 4.78595 4.86539 4.92535 4.95494 5.01810 5.06124 5.22470 5.25222 5.31260 5.39233 5.57248 5.61907 5.79904 5.89046 6.15929 6.31132 6.84023 7.41322 7.52821 7.88981 8.98925 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011875 B = 0.005077 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.253782 B = 5514.069460 C = 7322.819002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.129 3.871 3 N -0.590 5.590 4 C -0.268 4.268 5 H 0.034 0.966 6 C -0.004 4.004 7 N -0.935 5.935 8 Si 0.923 3.077 9 H -0.277 1.277 10 H -0.304 1.304 11 H -0.226 1.226 12 C 0.205 3.795 13 C 0.197 3.803 14 N -0.291 5.291 15 N -0.321 5.321 16 C 0.387 3.613 17 N -0.435 5.435 18 C 0.140 3.860 19 C -0.149 4.149 20 C -0.040 4.040 21 C -0.085 4.085 22 C -0.113 4.113 23 C -0.028 4.028 24 C -0.176 4.176 25 C 0.564 3.436 26 O -0.517 6.517 27 N -0.508 5.508 28 C 0.078 3.922 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.264 0.736 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.183 0.817 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.161 0.839 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 -16.147 19.384 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.006 3.994 3 N -0.311 5.311 4 C -0.397 4.397 5 H 0.052 0.948 6 C -0.203 4.203 7 N -0.577 5.577 8 Si 0.749 3.251 9 H -0.205 1.205 10 H -0.232 1.232 11 H -0.148 1.148 12 C 0.076 3.924 13 C -0.073 4.073 14 N -0.127 5.127 15 N -0.167 5.167 16 C 0.033 3.967 17 N -0.126 5.126 18 C 0.045 3.955 19 C -0.169 4.169 20 C -0.058 4.058 21 C -0.086 4.086 22 C -0.169 4.169 23 C -0.047 4.047 24 C -0.182 4.182 25 C 0.356 3.644 26 O -0.393 6.393 27 N -0.238 5.238 28 C -0.061 4.061 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.178 0.822 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.694 -15.320 19.040 25.093 hybrid contribution -0.102 0.529 -0.110 0.549 sum -5.795 -14.791 18.931 24.713 Atomic orbital electron populations 1.22223 0.95765 1.02274 1.01735 1.21326 0.94601 0.83392 1.00121 1.44241 1.73835 1.12804 1.00258 1.18437 1.34540 0.93572 0.93179 0.94815 1.26022 0.99079 0.97322 0.97859 1.70038 1.39569 1.08250 1.39840 0.86176 0.81869 0.79007 0.78022 1.20456 1.23178 1.14834 1.20367 0.84970 0.98737 0.88353 1.27069 1.01794 0.87079 0.91363 1.74276 0.95938 1.24005 1.18475 1.74574 1.22294 1.09028 1.10798 1.21583 0.81676 0.95794 0.97688 1.43945 1.08545 1.25412 1.34735 1.18222 0.93780 0.88322 0.95213 1.21510 0.90598 1.01931 1.02848 1.21670 1.02097 0.90361 0.91691 1.20429 0.92717 0.98321 0.97084 1.20929 1.00454 0.94498 1.00997 1.21188 0.94304 0.93362 0.95836 1.19582 0.92532 1.01748 1.04289 1.18348 0.87788 0.78749 0.79483 1.90816 1.67224 1.45365 1.35864 1.44506 1.12477 1.27524 1.39283 1.22191 0.74947 1.04753 1.04252 0.89801 0.92093 0.94241 0.93917 0.92135 0.92720 0.87151 0.90908 0.83163 0.79937 0.89158 0.88960 0.90253 0.82193 0.89381 0.87519 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 10.09 71.98 0.73 -3.55 16 2 C 0.13 4.40 5.80 86.38 0.50 4.90 16 3 N -0.59 -25.87 2.08 -706.35 -1.47 -27.33 16 4 C -0.27 -14.84 9.88 84.04 0.83 -14.01 16 5 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 6 C 0.00 -0.25 5.28 84.86 0.45 0.20 16 7 N -0.94 -58.86 13.97 21.65 0.30 -58.56 16 8 Si 0.92 42.88 25.11 68.60 1.72 44.60 16 9 H -0.28 -12.66 6.64 99.48 0.66 -12.00 16 10 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 11 H -0.23 -9.03 7.11 99.48 0.71 -8.32 16 12 C 0.20 8.33 4.57 85.63 0.39 8.72 16 13 C 0.20 8.49 7.70 137.66 1.06 9.55 16 14 N -0.29 -14.52 12.18 -49.58 -0.60 -15.12 16 15 N -0.32 -14.45 11.99 -58.09 -0.70 -15.15 16 16 C 0.39 14.86 8.28 260.18 2.16 17.02 16 17 N -0.43 -16.07 3.01 -338.27 -1.02 -17.09 16 18 C 0.14 4.03 6.65 38.66 0.26 4.29 16 19 C -0.15 -3.25 7.34 22.33 0.16 -3.09 16 20 C -0.04 -0.52 9.67 22.32 0.22 -0.30 16 21 C -0.08 -1.04 5.88 -19.86 -0.12 -1.16 16 22 C -0.11 -0.57 10.00 71.24 0.71 0.15 16 23 C -0.03 -0.50 9.29 22.46 0.21 -0.29 16 24 C -0.18 -4.59 5.88 -20.05 -0.12 -4.70 16 25 C 0.56 16.74 7.64 86.64 0.66 17.40 16 26 O -0.52 -15.69 16.10 -4.16 -0.07 -15.75 16 27 N -0.51 -16.07 3.06 -668.45 -2.04 -18.11 16 28 C 0.08 1.93 10.35 127.77 1.32 3.26 16 29 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.06 1.40 7.76 -2.39 -0.02 1.39 16 31 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.04 1.59 8.00 -2.39 -0.02 1.57 16 33 H 0.06 1.79 5.11 -2.38 -0.01 1.78 16 34 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.11 3.45 5.19 -2.39 -0.01 3.44 16 36 H 0.07 3.32 3.24 -2.39 -0.01 3.31 16 37 H 0.15 3.46 2.65 -2.91 -0.01 3.45 16 38 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.09 0.20 8.08 -2.39 -0.02 0.18 16 41 H 0.08 0.34 8.08 -2.39 -0.02 0.33 16 42 H 0.16 2.43 7.76 -2.91 -0.02 2.41 16 43 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 44 H 0.11 2.28 7.41 -2.39 -0.02 2.26 16 45 H 0.09 2.27 7.87 -2.39 -0.02 2.25 16 Total: -1.00 -79.44 360.81 6.55 -72.88 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.00 Total: 11.28 kcal Atomic # 6 Polarization: 28.94 SS G_CDS: 9.42 Total: 38.36 kcal Atomic # 7 Polarization: -145.84 SS G_CDS: -5.53 Total: -151.36 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.07 Total: -15.75 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.72 Total: 44.60 kcal Total: -79.44 6.55 -72.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121034427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.131 kcal (2) G-P(sol) polarization free energy of solvation -79.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds