Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48533 * 110.99878 * 2 1 4 4 C 1.54933 * 103.22920 * 159.72004 * 3 2 1 5 5 C 1.54601 * 102.92263 * 322.58376 * 4 3 2 6 6 C 1.47901 * 110.99758 * 117.39071 * 2 1 3 7 7 H 1.08994 * 110.08475 * 333.60635 * 6 2 1 8 8 C 1.50706 * 109.91631 * 94.80805 * 6 2 1 9 9 O 1.21276 * 119.99758 * 17.58685 * 8 6 2 10 10 N 1.34777 * 119.99872 * 197.59246 * 8 6 2 11 11 C 1.46969 * 120.59365 * 359.71010 * 10 8 6 12 12 C 1.53813 * 108.39168 * 124.76434 * 11 10 8 13 13 N 1.46959 * 108.58249 * 49.63810 * 12 11 10 14 14 C 1.34778 * 120.59241 * 124.66644 * 13 12 11 15 15 O 1.21282 * 119.99777 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00212 * 359.97438 * 14 13 12 17 17 S 1.80996 * 109.47036 * 179.97438 * 16 14 13 18 18 C 1.76206 * 100.00011 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99472 * 359.97438 * 18 17 16 20 20 C 1.38791 * 119.99963 * 180.02562 * 18 17 16 21 21 N 1.31635 * 120.00302 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00029 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46981 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47337 * 119.99994 * 22 20 18 25 25 H 1.48496 * 109.47057 * 240.00344 * 22 20 18 26 26 C 1.46963 * 118.81344 * 304.64309 * 13 12 11 27 27 C 1.46959 * 120.59346 * 180.02562 * 10 8 6 28 28 H 1.08999 * 109.47630 * 302.60335 * 1 2 3 29 29 H 1.09003 * 109.46918 * 62.60807 * 1 2 3 30 30 H 1.09003 * 109.47208 * 182.60458 * 1 2 3 31 31 H 1.09002 * 110.67028 * 41.28315 * 3 2 1 32 32 H 1.09005 * 110.66444 * 278.15269 * 3 2 1 33 33 H 1.08998 * 110.72508 * 204.22536 * 4 3 2 34 34 H 1.09004 * 110.88064 * 81.01139 * 4 3 2 35 35 H 1.09001 * 110.30916 * 263.04410 * 5 4 3 36 36 H 1.08996 * 110.39594 * 140.91688 * 5 4 3 37 37 H 1.08996 * 109.61215 * 244.54174 * 11 10 8 38 38 H 1.08992 * 109.60961 * 5.06229 * 11 10 8 39 39 H 1.09000 * 109.74236 * 289.84720 * 12 11 10 40 40 H 1.09004 * 109.67103 * 169.39049 * 12 11 10 41 41 H 1.08999 * 109.46999 * 300.00275 * 16 14 13 42 42 H 1.09001 * 109.46791 * 60.00432 * 16 14 13 43 43 H 0.96999 * 119.99640 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.61001 * 295.48418 * 26 13 12 45 45 H 1.09001 * 109.61109 * 174.96769 * 26 13 12 46 46 H 1.09006 * 109.60895 * 354.94068 * 27 10 8 47 47 H 1.09000 * 109.61336 * 115.45311 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 0.5228 5 6 3.2982 0.1054 1.5932 6 6 1.9989 -0.6352 1.2260 7 1 1.2770 -0.5431 2.0373 8 6 2.2938 -2.0898 0.9642 9 8 2.3970 -2.4920 -0.1753 10 7 2.4426 -2.9436 1.9964 11 6 2.3263 -2.4690 3.3824 12 6 1.2569 -3.3131 4.0963 13 7 1.5445 -4.7341 3.8561 14 6 1.6934 -5.5878 4.8882 15 8 1.9302 -6.7585 4.6775 16 6 1.5658 -5.0879 6.3042 17 16 1.8151 -6.4630 7.4543 18 6 1.6161 -5.6189 8.9882 19 1 1.4060 -4.5596 8.9982 20 6 1.7303 -6.3152 10.1833 21 7 1.9878 -7.6061 10.1711 22 14 1.5200 -5.4202 11.8095 23 1 1.2408 -3.9846 11.5519 24 1 0.3872 -6.0182 12.5608 25 1 2.7653 -5.5461 12.6084 26 6 1.6664 -5.2076 2.4701 27 6 2.7309 -4.3645 1.7561 28 1 -0.3634 0.5537 0.8657 29 1 -0.3633 0.4728 -0.9125 30 1 -0.3634 -1.0266 0.0467 31 1 1.4236 2.0205 0.6729 32 1 2.0040 1.7976 -1.0096 33 1 3.8121 2.1353 0.9715 34 1 4.1140 0.8848 -0.2771 35 1 3.2135 0.5487 2.5854 36 1 4.1467 -0.5777 1.5559 37 1 3.2844 -2.5825 3.8896 38 1 2.0294 -1.4203 3.3863 39 1 0.2707 -3.0678 3.7023 40 1 1.2838 -3.1103 5.1670 41 1 2.3170 -4.3197 6.4873 42 1 0.5715 -4.6665 6.4524 43 1 2.0672 -8.0927 11.0064 44 1 0.7093 -5.0971 1.9603 45 1 1.9669 -6.2554 2.4666 46 1 2.7012 -4.5678 0.6856 47 1 3.7171 -4.6095 2.1504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152253987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = -42.644091 kcal Electronic energy + Delta-G solvation = -27924.558651 eV Core-core repulsion = 24041.241071 eV Total energy + Delta-G solvation = -3883.317580 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.94345 -39.67032 -38.31227 -36.81527 -34.09478 -32.67020 -32.47600 -32.15758 -29.88879 -29.44487 -27.33268 -26.08496 -25.53564 -24.10161 -23.38105 -21.70779 -21.63122 -20.01358 -18.76606 -17.96473 -17.29898 -16.73703 -16.58650 -16.13192 -15.81922 -15.52371 -15.31346 -15.13968 -14.85034 -14.50088 -14.15860 -14.03688 -13.88380 -13.82095 -13.38003 -13.29156 -12.92682 -12.80301 -12.54345 -12.36292 -12.03145 -11.96731 -11.84447 -11.75784 -11.72636 -11.50088 -11.48128 -11.24276 -11.11238 -11.06629 -10.79582 -9.95035 -9.84630 -9.48139 -9.33776 -9.11968 -8.82540 -8.42039 -8.27850 -6.55714 -6.26371 -3.97531 2.37907 2.47151 2.90009 2.95854 3.17901 3.21819 3.27147 3.50726 3.55876 4.02546 4.12451 4.15047 4.34687 4.36813 4.52342 4.57980 4.69597 4.83922 4.87736 4.94613 4.95918 5.01256 5.03318 5.08905 5.13417 5.17327 5.25914 5.29625 5.37443 5.41521 5.49506 5.50505 5.53746 5.57923 5.68050 5.70042 5.74930 5.80737 6.01687 6.14859 6.35022 6.47056 6.51624 7.10681 7.42831 7.54840 7.99469 8.30248 8.45063 9.19008 10.81050 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.002337 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.988732 B =11975.735484 C =12940.578584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.499 5.499 3 C 0.036 3.964 4 C -0.122 4.122 5 C -0.121 4.121 6 C 0.047 3.953 7 H 0.077 0.923 8 C 0.524 3.476 9 O -0.516 6.516 10 N -0.615 5.615 11 C 0.091 3.909 12 C 0.094 3.906 13 N -0.621 5.621 14 C 0.535 3.465 15 O -0.513 6.513 16 C -0.151 4.151 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.101 3.899 27 C 0.100 3.900 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 20.170 -18.145 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.223 5.223 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.159 4.159 6 C -0.065 4.065 7 H 0.094 0.906 8 C 0.310 3.690 9 O -0.389 6.389 10 N -0.351 5.351 11 C -0.034 4.034 12 C -0.030 4.030 13 N -0.358 5.358 14 C 0.324 3.676 15 O -0.386 6.386 16 C -0.302 4.302 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.023 4.023 27 C -0.023 4.023 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.014 17.740 -19.457 26.330 hybrid contribution -0.832 2.378 2.182 3.333 sum -0.818 20.118 -17.274 26.529 Atomic orbital electron populations 1.22545 0.87088 1.02361 1.01152 1.64329 1.08366 1.14601 1.35040 1.23280 0.94990 0.89212 1.01664 1.22483 0.96815 0.98275 0.98441 1.22375 0.96031 0.97797 0.99703 1.22406 0.98375 0.92698 0.93031 0.90562 1.20396 0.76655 0.87262 0.84640 1.90688 1.49039 1.77923 1.21282 1.48095 1.71776 1.09115 1.06072 1.22323 1.00442 0.98684 0.81908 1.22165 0.97936 0.80829 1.02105 1.48044 1.73214 1.08656 1.05893 1.20386 0.75320 0.85680 0.86253 1.90703 1.46385 1.16629 1.84905 1.23553 1.04722 1.06660 0.95229 1.85463 1.93221 1.08069 0.96610 1.22880 1.56534 0.97340 0.91559 0.90887 1.25000 0.94546 0.94975 0.99094 1.70027 1.45335 1.07115 1.27708 0.86114 0.78013 0.79426 0.81911 1.19620 1.20554 1.20557 1.21919 0.98804 1.00233 0.81316 1.22031 0.98607 0.79314 1.02381 0.95195 0.90712 0.91265 0.93375 0.89474 0.90454 0.90314 0.90162 0.90401 0.90147 0.88834 0.91044 0.87907 0.89218 0.89235 0.92190 0.91408 0.87594 0.87909 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.40 60.06 0.56 0.69 16 2 N -0.50 -4.49 4.75 -232.16 -1.10 -5.59 16 3 C 0.04 0.23 6.56 -1.90 -0.01 0.22 16 4 C -0.12 -0.74 7.06 -24.87 -0.18 -0.91 16 5 C -0.12 -0.79 6.03 -25.37 -0.15 -0.94 16 6 C 0.05 0.39 1.95 -67.79 -0.13 0.25 16 7 H 0.08 0.51 6.27 -51.93 -0.33 0.18 16 8 C 0.52 5.84 6.74 -10.98 -0.07 5.77 16 9 O -0.52 -7.78 15.96 5.56 0.09 -7.70 16 10 N -0.61 -6.13 2.94 -172.18 -0.51 -6.63 16 11 C 0.09 0.71 6.35 -3.36 -0.02 0.69 16 12 C 0.09 0.89 6.52 -3.37 -0.02 0.87 16 13 N -0.62 -8.25 2.95 -172.19 -0.51 -8.76 16 14 C 0.54 9.66 7.72 -10.98 -0.08 9.57 16 15 O -0.51 -11.31 15.27 5.56 0.08 -11.23 16 16 C -0.15 -2.89 4.50 36.01 0.16 -2.72 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.53 -14.77 9.50 30.94 0.29 -14.47 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 22 Si 0.92 20.87 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.10 1.21 6.60 -3.57 -0.02 1.19 16 27 C 0.10 1.08 6.59 -3.57 -0.02 1.06 16 28 H 0.03 0.18 8.01 -51.93 -0.42 -0.24 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.26 7.96 -51.93 -0.41 -0.16 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.59 7.68 -51.93 -0.40 0.19 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.49 5.30 -51.93 -0.28 0.22 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.92 5.91 -51.93 -0.31 0.62 16 41 H 0.09 1.54 7.72 -51.92 -0.40 1.14 16 42 H 0.09 1.57 7.91 -51.91 -0.41 1.16 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.11 1.42 6.99 -51.93 -0.36 1.06 16 46 H 0.10 1.16 6.99 -51.93 -0.36 0.80 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -36.26 385.83 -9.87 -46.14 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.45 Total: -2.34 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 0.20 Total: 3.21 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -1.38 Total: -45.94 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.17 Total: -18.92 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.26 -9.87 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152253987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.491 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds