Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48533 * 110.99878 * 2 1 4 4 C 1.54933 * 103.22920 * 159.72004 * 3 2 1 5 5 C 1.54601 * 102.92263 * 322.58376 * 4 3 2 6 6 C 1.47901 * 110.99758 * 117.39071 * 2 1 3 7 7 H 1.08994 * 110.08475 * 333.60635 * 6 2 1 8 8 C 1.50706 * 109.91631 * 94.80805 * 6 2 1 9 9 O 1.21276 * 119.99758 * 17.58685 * 8 6 2 10 10 N 1.34777 * 119.99872 * 197.59246 * 8 6 2 11 11 C 1.46969 * 120.59365 * 359.71010 * 10 8 6 12 12 C 1.53813 * 108.39168 * 124.76434 * 11 10 8 13 13 N 1.46959 * 108.58249 * 49.63810 * 12 11 10 14 14 C 1.34778 * 120.59241 * 124.66644 * 13 12 11 15 15 O 1.21282 * 119.99777 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00212 * 359.97438 * 14 13 12 17 17 S 1.80996 * 109.47036 * 179.97438 * 16 14 13 18 18 C 1.76206 * 100.00011 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99472 * 359.97438 * 18 17 16 20 20 C 1.38791 * 119.99963 * 180.02562 * 18 17 16 21 21 N 1.31635 * 120.00302 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00029 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46981 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47337 * 119.99994 * 22 20 18 25 25 H 1.48496 * 109.47057 * 240.00344 * 22 20 18 26 26 C 1.46963 * 118.81344 * 304.64309 * 13 12 11 27 27 C 1.46959 * 120.59346 * 180.02562 * 10 8 6 28 28 H 1.08999 * 109.47630 * 302.60335 * 1 2 3 29 29 H 1.09003 * 109.46918 * 62.60807 * 1 2 3 30 30 H 1.09003 * 109.47208 * 182.60458 * 1 2 3 31 31 H 1.09002 * 110.67028 * 41.28315 * 3 2 1 32 32 H 1.09005 * 110.66444 * 278.15269 * 3 2 1 33 33 H 1.08998 * 110.72508 * 204.22536 * 4 3 2 34 34 H 1.09004 * 110.88064 * 81.01139 * 4 3 2 35 35 H 1.09001 * 110.30916 * 263.04410 * 5 4 3 36 36 H 1.08996 * 110.39594 * 140.91688 * 5 4 3 37 37 H 1.08996 * 109.61215 * 244.54174 * 11 10 8 38 38 H 1.08992 * 109.60961 * 5.06229 * 11 10 8 39 39 H 1.09000 * 109.74236 * 289.84720 * 12 11 10 40 40 H 1.09004 * 109.67103 * 169.39049 * 12 11 10 41 41 H 1.08999 * 109.46999 * 300.00275 * 16 14 13 42 42 H 1.09001 * 109.46791 * 60.00432 * 16 14 13 43 43 H 0.96999 * 119.99640 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.61001 * 295.48418 * 26 13 12 45 45 H 1.09001 * 109.61109 * 174.96769 * 26 13 12 46 46 H 1.09006 * 109.60895 * 354.94068 * 27 10 8 47 47 H 1.09000 * 109.61336 * 115.45311 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 0.5228 5 6 3.2982 0.1054 1.5932 6 6 1.9989 -0.6352 1.2260 7 1 1.2770 -0.5431 2.0373 8 6 2.2938 -2.0898 0.9642 9 8 2.3970 -2.4920 -0.1753 10 7 2.4426 -2.9436 1.9964 11 6 2.3263 -2.4690 3.3824 12 6 1.2569 -3.3131 4.0963 13 7 1.5445 -4.7341 3.8561 14 6 1.6934 -5.5878 4.8882 15 8 1.9302 -6.7585 4.6775 16 6 1.5658 -5.0879 6.3042 17 16 1.8151 -6.4630 7.4543 18 6 1.6161 -5.6189 8.9882 19 1 1.4060 -4.5596 8.9982 20 6 1.7303 -6.3152 10.1833 21 7 1.9878 -7.6061 10.1711 22 14 1.5200 -5.4202 11.8095 23 1 1.2408 -3.9846 11.5519 24 1 0.3872 -6.0182 12.5608 25 1 2.7653 -5.5461 12.6084 26 6 1.6664 -5.2076 2.4701 27 6 2.7309 -4.3645 1.7561 28 1 -0.3634 0.5537 0.8657 29 1 -0.3633 0.4728 -0.9125 30 1 -0.3634 -1.0266 0.0467 31 1 1.4236 2.0205 0.6729 32 1 2.0040 1.7976 -1.0096 33 1 3.8121 2.1353 0.9715 34 1 4.1140 0.8848 -0.2771 35 1 3.2135 0.5487 2.5854 36 1 4.1467 -0.5777 1.5559 37 1 3.2844 -2.5825 3.8896 38 1 2.0294 -1.4203 3.3863 39 1 0.2707 -3.0678 3.7023 40 1 1.2838 -3.1103 5.1670 41 1 2.3170 -4.3197 6.4873 42 1 0.5715 -4.6665 6.4524 43 1 2.0672 -8.0927 11.0064 44 1 0.7093 -5.0971 1.9603 45 1 1.9669 -6.2554 2.4666 46 1 2.7012 -4.5678 0.6856 47 1 3.7171 -4.6095 2.1504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152253987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = -68.689349 kcal Electronic energy + Delta-G solvation = -27925.688058 eV Core-core repulsion = 24041.241071 eV Total energy + Delta-G solvation = -3884.446987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.79010 -40.76990 -39.11900 -37.88643 -35.17656 -34.56197 -33.31584 -32.95850 -30.80106 -30.52663 -28.33993 -27.61087 -26.61309 -24.97072 -24.24386 -22.54640 -22.11367 -20.98941 -20.00319 -19.37055 -18.49927 -17.73319 -17.40032 -16.97700 -16.90935 -16.85472 -16.73321 -16.08199 -15.92702 -15.77377 -15.09909 -14.96469 -14.80874 -14.62420 -14.48531 -14.43713 -14.27259 -13.61024 -13.45115 -13.35917 -13.14494 -12.93467 -12.90406 -12.71091 -12.64468 -12.58878 -12.47735 -12.36063 -12.30455 -11.98731 -11.72779 -11.67728 -11.14290 -10.93163 -10.78308 -10.36778 -10.22427 -9.43791 -9.36605 -8.65494 -8.32797 -6.10917 1.24522 1.43470 1.45430 1.49947 1.57267 1.62358 1.75158 2.12411 2.28825 3.00046 3.01980 3.24175 3.38479 3.58852 3.61183 3.73002 3.83813 3.87810 4.01548 4.08912 4.14085 4.21007 4.27645 4.33716 4.42395 4.44760 4.47218 4.48965 4.56293 4.62087 4.64407 4.73764 4.74372 4.85599 4.90951 4.97457 5.01040 5.11457 5.24341 5.33275 5.41082 5.44548 5.79634 6.00879 6.18064 6.22442 6.36907 7.08735 7.09440 7.16884 8.76557 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.002337 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.988732 B =11975.735484 C =12940.578584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.532 5.532 3 C 0.037 3.963 4 C -0.121 4.121 5 C -0.119 4.119 6 C 0.050 3.950 7 H 0.101 0.899 8 C 0.521 3.479 9 O -0.564 6.564 10 N -0.613 5.613 11 C 0.093 3.907 12 C 0.086 3.914 13 N -0.608 5.608 14 C 0.535 3.465 15 O -0.565 6.565 16 C -0.122 4.122 17 S -0.158 6.158 18 C -0.540 4.540 19 H 0.087 0.913 20 C 0.011 3.989 21 N -0.913 5.913 22 Si 0.999 3.001 23 H -0.252 1.252 24 H -0.277 1.277 25 H -0.276 1.276 26 C 0.105 3.895 27 C 0.107 3.893 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.270 0.730 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 24.330 -17.113 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.089 4.089 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.062 4.062 7 H 0.119 0.881 8 C 0.309 3.691 9 O -0.441 6.441 10 N -0.347 5.347 11 C -0.030 4.030 12 C -0.037 4.037 13 N -0.343 5.343 14 C 0.323 3.677 15 O -0.443 6.443 16 C -0.273 4.273 17 S 0.069 5.931 18 C -0.687 4.687 19 H 0.105 0.895 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.821 3.179 23 H -0.176 1.176 24 H -0.203 1.203 25 H -0.202 1.202 26 C -0.019 4.019 27 C -0.017 4.017 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.148 0.852 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.702 21.970 -18.438 28.690 hybrid contribution -0.626 1.137 1.685 2.127 sum -1.328 23.107 -16.754 28.572 Atomic orbital electron populations 1.22515 0.86526 1.01644 1.02216 1.64252 1.09208 1.16226 1.35962 1.23320 0.95247 0.88212 1.02157 1.22497 0.96339 0.99135 0.97975 1.22438 0.94500 0.97458 1.01318 1.22460 0.99812 0.90397 0.93536 0.88139 1.21076 0.75430 0.88588 0.83962 1.90666 1.51273 1.78934 1.23271 1.48170 1.71058 1.08399 1.07067 1.22505 1.00240 1.00150 0.80124 1.22544 0.99589 0.78219 1.03360 1.48017 1.71185 1.09915 1.05174 1.20234 0.75287 0.85429 0.86760 1.90691 1.49168 1.18906 1.85506 1.23366 1.06647 1.03613 0.93711 1.85712 1.93749 1.13915 0.99692 1.23220 1.56031 0.97841 0.91651 0.89498 1.26143 0.93977 0.95750 1.03480 1.70202 1.46825 1.09164 1.28797 0.84902 0.77896 0.78822 0.76307 1.17566 1.20259 1.20187 1.21922 0.99679 0.99541 0.80712 1.21833 0.97957 0.80190 1.01676 0.93257 0.90449 0.92904 0.91486 0.89700 0.88177 0.92170 0.87142 0.91790 0.89702 0.85248 0.89063 0.86720 0.86676 0.87054 0.92115 0.90347 0.89486 0.88644 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.40 127.69 1.20 1.45 16 2 N -0.53 -8.51 4.75 -888.42 -4.22 -12.73 16 3 C 0.04 0.39 6.56 86.65 0.57 0.96 16 4 C -0.12 -1.15 7.06 31.80 0.22 -0.93 16 5 C -0.12 -1.15 6.03 31.48 0.19 -0.96 16 6 C 0.05 0.67 1.95 44.32 0.09 0.76 16 7 H 0.10 0.85 6.27 -2.39 -0.01 0.84 16 8 C 0.52 10.84 6.74 87.66 0.59 11.44 16 9 O -0.56 -17.10 15.96 -3.02 -0.05 -17.15 16 10 N -0.61 -10.98 2.94 -817.06 -2.40 -13.38 16 11 C 0.09 1.09 6.35 86.56 0.55 1.64 16 12 C 0.09 1.30 6.52 86.57 0.56 1.86 16 13 N -0.61 -15.16 2.95 -817.06 -2.41 -17.57 16 14 C 0.53 19.01 7.72 87.66 0.68 19.68 16 15 O -0.56 -25.71 15.27 -3.04 -0.05 -25.76 16 16 C -0.12 -4.49 4.50 71.24 0.32 -4.17 16 17 S -0.16 -8.49 20.57 -56.49 -1.16 -9.66 16 18 C -0.54 -29.53 9.50 67.95 0.65 -28.89 16 19 H 0.09 4.34 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.61 5.49 84.85 0.47 1.07 16 21 N -0.91 -55.21 13.22 21.65 0.29 -54.93 16 22 Si 1.00 42.13 29.55 68.60 2.03 44.16 16 23 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.10 2.48 6.60 86.43 0.57 3.05 16 27 C 0.11 2.29 6.59 86.43 0.57 2.86 16 28 H 0.05 0.43 8.01 -2.39 -0.02 0.41 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.45 7.96 -2.39 -0.02 0.43 16 32 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.06 0.82 7.68 -2.39 -0.02 0.80 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.13 0.65 5.30 -2.39 -0.01 0.64 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.53 5.91 -2.38 -0.01 1.52 16 41 H 0.12 3.64 7.72 -2.39 -0.02 3.62 16 42 H 0.11 3.61 7.91 -2.40 -0.02 3.59 16 43 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.09 2.44 6.99 -2.39 -0.02 2.42 16 46 H 0.10 2.22 6.99 -2.38 -0.02 2.20 16 47 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -83.16 385.83 0.21 -82.95 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.96 Total: 14.24 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 7.22 Total: 9.82 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -8.75 Total: -98.61 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.09 Total: -42.91 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -83.16 0.21 -82.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152253987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.263 kcal (2) G-P(sol) polarization free energy of solvation -83.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds