Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47417 * 2 1 4 4 C 1.50697 * 109.47033 * 239.99887 * 2 1 3 5 5 H 1.08006 * 120.00286 * 239.99587 * 4 2 1 6 6 C 1.37881 * 120.00333 * 60.00186 * 4 2 1 7 7 N 1.31515 * 119.99671 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47082 * 89.99844 * 8 6 4 10 10 H 1.48506 * 109.47060 * 209.99376 * 8 6 4 11 11 H 1.48496 * 109.47393 * 329.99512 * 8 6 4 12 12 N 1.46501 * 109.47212 * 120.00034 * 2 1 3 13 13 C 1.34778 * 119.99642 * 274.99591 * 12 2 1 14 14 O 1.21587 * 120.00246 * 0.02562 * 13 12 2 15 15 N 1.34776 * 119.99557 * 179.97438 * 13 12 2 16 16 C 1.39969 * 119.99788 * 184.61480 * 15 13 12 17 17 C 1.38978 * 120.00303 * 145.13390 * 16 15 13 18 18 C 1.38207 * 120.21477 * 180.28155 * 17 16 15 19 19 C 1.38034 * 120.21015 * 359.73868 * 18 17 16 20 20 C 1.39528 * 120.00357 * 0.02562 * 19 18 17 21 21 C 1.47949 * 120.10927 * 179.97438 * 20 19 18 22 22 N 1.31439 * 126.54261 * 195.04860 * 21 20 19 23 23 N 1.28524 * 109.71154 * 180.02562 * 22 21 20 24 24 C 1.30780 * 110.02998 * 0.07818 * 23 22 21 25 25 N 1.35767 * 107.42457 * 359.56115 * 24 23 22 26 26 C 1.46746 * 111.09520 * 180.02562 * 25 24 23 27 27 C 1.54419 * 105.64929 * 343.34158 * 26 25 24 28 28 C 1.51357 * 142.76004 * 179.82110 * 24 23 22 29 29 C 1.38606 * 120.00093 * 324.89897 * 16 15 13 30 30 H 1.09006 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47367 * 299.99989 * 1 2 3 32 32 H 1.08997 * 109.47424 * 60.00189 * 1 2 3 33 33 H 0.96999 * 120.00071 * 179.97438 * 7 6 4 34 34 H 0.96994 * 119.99957 * 95.00271 * 12 2 1 35 35 H 0.96999 * 120.00574 * 4.62093 * 15 13 12 36 36 H 1.08007 * 119.89253 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.89398 * 179.71915 * 18 17 16 38 38 H 1.08003 * 119.99652 * 179.97438 * 19 18 17 39 39 H 1.08998 * 110.38883 * 224.19291 * 26 25 24 40 40 H 1.08999 * 110.00175 * 102.28909 * 26 25 24 41 41 H 1.09001 * 110.94677 * 267.32300 * 27 26 25 42 42 H 1.09003 * 110.94582 * 143.62001 * 27 26 25 43 43 H 1.09003 * 110.46453 * 315.20019 * 28 24 23 44 44 H 1.08996 * 110.46271 * 77.65665 * 28 24 23 45 45 H 1.07996 * 120.10574 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 1.3426 -2.1618 -4.4118 10 1 2.4864 -0.1415 -5.1123 11 1 3.6292 -1.7584 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8575 1.1615 2.4118 15 7 2.5958 -0.6537 3.4576 16 6 2.6383 0.0178 4.6850 17 6 2.3821 -0.6722 5.8639 18 6 2.4171 -0.0123 7.0777 19 6 2.7121 1.3352 7.1274 20 6 2.9756 2.0357 5.9498 21 6 3.2915 3.4802 6.0003 22 7 3.2883 4.3178 4.9875 23 7 3.6115 5.4929 5.3957 24 6 3.8396 5.4727 6.6833 25 7 3.6366 4.2007 7.1123 26 6 3.8716 4.0865 8.5563 27 6 4.6645 5.3515 8.9507 28 6 4.2394 6.3500 7.8501 29 6 2.9407 1.3699 4.7252 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.7087 1.1612 -3.4844 34 1 2.2490 -1.6317 1.1526 35 1 2.8895 -1.5763 3.3992 36 1 2.1500 -1.7266 5.8309 37 1 2.2128 -0.5527 7.9903 38 1 2.7382 1.8476 8.0779 39 1 4.4547 3.1924 8.7766 40 1 2.9203 4.0571 9.0877 41 1 5.7379 5.1656 8.9147 42 1 4.3650 5.7076 9.9364 43 1 5.0758 6.9926 7.5748 44 1 3.3927 6.9500 8.1834 45 1 3.1442 1.9069 3.8106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156941770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = 91.344508 kcal Electronic energy + Delta-G solvation = -28573.687401 eV Core-core repulsion = 24593.028803 eV Total energy + Delta-G solvation = -3980.658598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.30534 -40.21631 -38.45238 -37.51371 -35.21308 -34.30693 -32.88725 -32.36812 -31.31106 -29.86736 -29.43634 -28.15421 -27.73615 -25.21347 -23.82820 -23.02270 -22.78088 -21.43351 -20.86018 -20.59563 -19.77711 -18.17010 -17.80826 -17.22242 -16.30311 -16.18553 -15.83426 -15.33353 -15.06915 -14.88787 -14.74444 -14.25945 -14.00682 -13.90269 -13.78647 -13.61752 -13.45255 -13.11221 -12.86563 -12.36218 -12.25215 -11.92928 -11.81040 -11.67433 -11.58696 -11.38400 -11.07849 -10.96373 -10.73068 -10.44054 -10.36541 -10.28925 -10.19915 -10.14956 -9.67370 -9.35218 -9.00273 -8.54039 -8.39143 -8.13962 -7.76955 -6.08537 -4.17978 0.74487 1.37615 1.93347 2.17731 2.85271 3.14760 3.27044 3.34261 3.36711 3.39474 3.65731 3.87330 3.99908 4.09134 4.16235 4.29846 4.35312 4.69762 4.75925 4.85845 4.94061 4.98732 5.03765 5.12325 5.15440 5.23823 5.28418 5.35853 5.45479 5.58148 5.63655 5.95535 6.06161 6.21199 6.36097 6.42423 6.59072 6.70217 6.84015 7.02083 7.12043 7.14728 7.25182 7.49787 7.65416 7.86458 8.02441 8.19343 8.69844 8.75385 8.87172 9.25860 9.49994 10.97508 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.002379 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.306110 B =11768.633382 C =13003.907541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.717 5.717 13 C 0.689 3.311 14 O -0.572 6.572 15 N -0.696 5.696 16 C 0.185 3.815 17 C -0.142 4.142 18 C -0.099 4.099 19 C -0.133 4.133 20 C -0.005 4.005 21 C 0.246 3.754 22 N -0.258 5.258 23 N -0.276 5.276 24 C 0.152 3.848 25 N -0.498 5.498 26 C 0.102 3.898 27 C -0.129 4.129 28 C -0.038 4.038 29 C -0.077 4.077 30 H 0.025 0.975 31 H 0.015 0.985 32 H 0.091 0.909 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.404 0.596 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.005 1.357 28.772 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.368 5.368 13 C 0.389 3.611 14 O -0.449 6.449 15 N -0.345 5.345 16 C 0.088 3.912 17 C -0.163 4.163 18 C -0.117 4.117 19 C -0.154 4.154 20 C -0.009 4.009 21 C -0.016 4.016 22 N -0.098 5.098 23 N -0.116 5.116 24 C -0.115 4.115 25 N -0.191 5.191 26 C -0.020 4.020 27 C -0.167 4.167 28 C -0.078 4.078 29 C -0.100 4.100 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.218 0.782 35 H 0.239 0.761 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.423 2.976 27.067 27.978 hybrid contribution 0.506 -1.953 0.344 2.047 sum 6.929 1.023 27.411 28.292 Atomic orbital electron populations 1.22103 0.98521 0.99014 1.01019 1.18706 0.90871 0.93867 0.78752 0.93087 1.21190 1.32562 1.13260 0.90235 0.92103 1.24888 0.94862 0.94963 0.99034 1.69908 1.35733 1.22312 1.23921 0.86432 0.79085 0.79229 0.82225 1.20592 1.21048 1.19902 1.45866 1.68523 1.13273 1.09184 1.16221 0.78838 0.85595 0.80442 1.90941 1.56431 1.13806 1.83678 1.42870 1.68650 1.16341 1.06594 1.17396 0.97089 0.91873 0.84806 1.21023 1.03175 1.00679 0.91463 1.20678 1.00027 0.93688 0.97345 1.20934 1.03258 0.94812 0.96395 1.17310 1.03044 0.86313 0.94202 1.22620 1.03410 0.94390 0.81204 1.74929 1.17405 0.95305 1.22137 1.74029 1.16556 1.14787 1.06257 1.26128 1.04566 0.86509 0.94305 1.47514 1.51733 1.10584 1.09281 1.22432 1.02025 1.01178 0.76414 1.22818 1.01391 0.92801 0.99690 1.20635 1.03322 0.95923 0.87892 1.21504 0.96718 0.93580 0.98178 0.95581 0.96542 0.89072 0.92522 0.78203 0.76092 0.85355 0.85337 0.86705 0.88505 0.88764 0.89145 0.87717 0.87845 0.88035 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.26 37.15 0.34 -3.44 16 2 C 0.28 7.28 2.56 -69.09 -0.18 7.10 16 3 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 4 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.35 11.32 55.43 0.63 -24.72 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.72 -15.12 5.07 -59.82 -0.30 -15.42 16 13 C 0.69 14.29 8.37 -86.92 -0.73 13.56 16 14 O -0.57 -14.40 13.44 5.29 0.07 -14.33 16 15 N -0.70 -10.72 5.34 -14.25 -0.08 -10.79 16 16 C 0.19 2.79 6.29 -83.73 -0.53 2.26 16 17 C -0.14 -1.59 9.96 -39.32 -0.39 -1.98 16 18 C -0.10 -0.97 10.02 -39.67 -0.40 -1.36 16 19 C -0.13 -1.47 9.67 -39.18 -0.38 -1.85 16 20 C -0.01 -0.08 5.87 -104.99 -0.62 -0.70 16 21 C 0.25 3.94 7.83 -154.18 -1.21 2.73 16 22 N -0.26 -5.08 11.99 32.52 0.39 -4.69 16 23 N -0.28 -4.90 12.20 33.05 0.40 -4.50 16 24 C 0.15 1.91 8.71 -154.20 -1.34 0.57 16 25 N -0.50 -5.85 3.61 -109.68 -0.40 -6.24 16 26 C 0.10 0.57 6.34 -3.16 -0.02 0.55 16 27 C -0.13 -0.41 7.16 -25.16 -0.18 -0.59 16 28 C -0.04 -0.23 6.85 -26.74 -0.18 -0.41 16 29 C -0.08 -1.35 8.34 -39.00 -0.33 -1.67 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.39 6.83 8.56 -40.82 -0.35 6.48 16 35 H 0.40 4.61 8.84 -40.82 -0.36 4.25 16 36 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.11 0.95 6.44 -52.48 -0.34 0.61 16 39 H 0.10 0.41 8.00 -51.93 -0.42 0.00 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.16 3.40 6.10 -52.49 -0.32 3.08 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -37.72 375.86 -11.01 -48.72 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.84 Total: 8.53 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -6.53 Total: 1.87 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: 0.65 Total: -66.36 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.07 Total: -14.33 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.72 -11.01 -48.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156941770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.069 kcal (2) G-P(sol) polarization free energy of solvation -37.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds