Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47417 * 2 1 4 4 C 1.50697 * 109.47033 * 239.99887 * 2 1 3 5 5 H 1.08006 * 120.00286 * 239.99587 * 4 2 1 6 6 C 1.37881 * 120.00333 * 60.00186 * 4 2 1 7 7 N 1.31515 * 119.99671 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47082 * 89.99844 * 8 6 4 10 10 H 1.48506 * 109.47060 * 209.99376 * 8 6 4 11 11 H 1.48496 * 109.47393 * 329.99512 * 8 6 4 12 12 N 1.46501 * 109.47212 * 120.00034 * 2 1 3 13 13 C 1.34778 * 119.99642 * 274.99591 * 12 2 1 14 14 O 1.21587 * 120.00246 * 0.02562 * 13 12 2 15 15 N 1.34776 * 119.99557 * 179.97438 * 13 12 2 16 16 C 1.39969 * 119.99788 * 184.61480 * 15 13 12 17 17 C 1.38978 * 120.00303 * 145.13390 * 16 15 13 18 18 C 1.38207 * 120.21477 * 180.28155 * 17 16 15 19 19 C 1.38034 * 120.21015 * 359.73868 * 18 17 16 20 20 C 1.39528 * 120.00357 * 0.02562 * 19 18 17 21 21 C 1.47949 * 120.10927 * 179.97438 * 20 19 18 22 22 N 1.31439 * 126.54261 * 195.04860 * 21 20 19 23 23 N 1.28524 * 109.71154 * 180.02562 * 22 21 20 24 24 C 1.30780 * 110.02998 * 0.07818 * 23 22 21 25 25 N 1.35767 * 107.42457 * 359.56115 * 24 23 22 26 26 C 1.46746 * 111.09520 * 180.02562 * 25 24 23 27 27 C 1.54419 * 105.64929 * 343.34158 * 26 25 24 28 28 C 1.51357 * 142.76004 * 179.82110 * 24 23 22 29 29 C 1.38606 * 120.00093 * 324.89897 * 16 15 13 30 30 H 1.09006 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47367 * 299.99989 * 1 2 3 32 32 H 1.08997 * 109.47424 * 60.00189 * 1 2 3 33 33 H 0.96999 * 120.00071 * 179.97438 * 7 6 4 34 34 H 0.96994 * 119.99957 * 95.00271 * 12 2 1 35 35 H 0.96999 * 120.00574 * 4.62093 * 15 13 12 36 36 H 1.08007 * 119.89253 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.89398 * 179.71915 * 18 17 16 38 38 H 1.08003 * 119.99652 * 179.97438 * 19 18 17 39 39 H 1.08998 * 110.38883 * 224.19291 * 26 25 24 40 40 H 1.08999 * 110.00175 * 102.28909 * 26 25 24 41 41 H 1.09001 * 110.94677 * 267.32300 * 27 26 25 42 42 H 1.09003 * 110.94582 * 143.62001 * 27 26 25 43 43 H 1.09003 * 110.46453 * 315.20019 * 28 24 23 44 44 H 1.08996 * 110.46271 * 77.65665 * 28 24 23 45 45 H 1.07996 * 120.10574 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 1.3426 -2.1618 -4.4118 10 1 2.4864 -0.1415 -5.1123 11 1 3.6292 -1.7584 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8575 1.1615 2.4118 15 7 2.5958 -0.6537 3.4576 16 6 2.6383 0.0178 4.6850 17 6 2.3821 -0.6722 5.8639 18 6 2.4171 -0.0123 7.0777 19 6 2.7121 1.3352 7.1274 20 6 2.9756 2.0357 5.9498 21 6 3.2915 3.4802 6.0003 22 7 3.2883 4.3178 4.9875 23 7 3.6115 5.4929 5.3957 24 6 3.8396 5.4727 6.6833 25 7 3.6366 4.2007 7.1123 26 6 3.8716 4.0865 8.5563 27 6 4.6645 5.3515 8.9507 28 6 4.2394 6.3500 7.8501 29 6 2.9407 1.3699 4.7252 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.7087 1.1612 -3.4844 34 1 2.2490 -1.6317 1.1526 35 1 2.8895 -1.5763 3.3992 36 1 2.1500 -1.7266 5.8309 37 1 2.2128 -0.5527 7.9903 38 1 2.7382 1.8476 8.0779 39 1 4.4547 3.1924 8.7766 40 1 2.9203 4.0571 9.0877 41 1 5.7379 5.1656 8.9147 42 1 4.3650 5.7076 9.9364 43 1 5.0758 6.9926 7.5748 44 1 3.3927 6.9500 8.1834 45 1 3.1442 1.9069 3.8106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156941770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = 64.329988 kcal Electronic energy + Delta-G solvation = -28574.858839 eV Core-core repulsion = 24593.028803 eV Total energy + Delta-G solvation = -3981.830036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.29751 -41.62250 -39.75191 -38.22207 -36.97066 -35.86670 -34.39831 -33.80898 -32.13315 -31.39324 -30.34537 -29.71888 -28.49622 -27.35711 -24.92718 -24.31833 -23.33101 -22.85893 -21.88257 -21.71000 -21.44784 -19.81621 -18.92808 -18.03997 -17.85200 -17.34439 -17.09496 -16.75603 -16.50780 -16.14230 -15.77122 -15.64440 -15.42002 -15.03455 -14.66300 -14.41945 -14.33450 -14.24625 -14.09968 -13.97220 -13.70462 -13.01276 -12.94903 -12.85983 -12.74749 -12.67125 -12.48845 -12.42774 -12.30442 -12.25239 -12.14761 -11.65297 -11.43643 -11.12810 -11.10605 -11.01414 -10.64521 -10.62534 -9.88724 -9.50304 -9.07345 -8.18454 -6.36682 -0.25865 0.33393 0.97893 1.36777 1.43563 1.45708 1.55913 1.70376 1.78330 2.17077 2.41147 2.70665 2.83226 3.11863 3.17345 3.41618 3.43877 3.74195 3.89786 4.00573 4.09458 4.14027 4.28272 4.36770 4.46585 4.50567 4.59132 4.70269 4.71461 4.81482 4.89131 4.93578 4.98329 5.07093 5.10030 5.13178 5.26343 5.29620 5.39834 5.42884 5.50385 5.57882 5.64389 5.82854 5.83557 5.98031 6.07266 6.24241 6.71374 7.21969 7.32382 7.60951 7.66880 8.88386 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.002379 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.306110 B =11768.633382 C =13003.907541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.288 3.712 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.978 3.022 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.712 5.712 13 C 0.687 3.313 14 O -0.624 6.624 15 N -0.674 5.674 16 C 0.156 3.844 17 C -0.121 4.121 18 C -0.082 4.082 19 C -0.115 4.115 20 C -0.025 4.025 21 C 0.233 3.767 22 N -0.333 5.333 23 N -0.344 5.344 24 C 0.159 3.841 25 N -0.492 5.492 26 C 0.084 3.916 27 C -0.111 4.111 28 C -0.039 4.039 29 C -0.115 4.115 30 H 0.044 0.956 31 H 0.007 0.993 32 H 0.067 0.933 33 H 0.266 0.734 34 H 0.405 0.595 35 H 0.425 0.575 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.152 0.848 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.147 0.853 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -1.556 33.681 34.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.184 3.816 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.802 3.198 9 H -0.193 1.193 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.365 5.365 13 C 0.388 3.612 14 O -0.504 6.504 15 N -0.324 5.324 16 C 0.060 3.940 17 C -0.143 4.143 18 C -0.100 4.100 19 C -0.135 4.135 20 C -0.028 4.028 21 C -0.032 4.032 22 N -0.172 5.172 23 N -0.183 5.183 24 C -0.110 4.110 25 N -0.184 5.184 26 C -0.035 4.035 27 C -0.148 4.148 28 C -0.078 4.078 29 C -0.138 4.138 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.241 0.759 35 H 0.264 0.736 36 H 0.185 0.815 37 H 0.200 0.800 38 H 0.170 0.830 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.165 0.835 43 H 0.133 0.867 44 H 0.141 0.859 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.232 -0.002 32.065 32.870 hybrid contribution 0.303 -0.966 -0.949 1.388 sum 7.536 -0.969 31.116 32.030 Atomic orbital electron populations 1.21907 0.98339 0.99543 0.99364 1.18248 0.90971 0.91501 0.80852 0.98924 1.21520 1.32691 1.13633 0.90488 0.90491 1.25882 0.94901 0.95602 1.02551 1.70080 1.37024 1.23983 1.24670 0.85258 0.79001 0.77940 0.77583 1.19294 1.21411 1.18716 1.45401 1.68858 1.13954 1.08239 1.16366 0.78561 0.84943 0.81368 1.90935 1.58439 1.16373 1.84662 1.42424 1.67614 1.16939 1.05439 1.17662 0.99300 0.91345 0.85655 1.21455 1.00528 1.02230 0.90052 1.21313 0.97097 0.92995 0.98562 1.21373 1.00614 0.95514 0.96009 1.17502 1.04384 0.86072 0.94880 1.22781 1.03378 0.94833 0.82181 1.74766 1.20200 0.96871 1.25406 1.73819 1.19829 1.14944 1.09755 1.27324 1.01416 0.88369 0.93880 1.47857 1.50297 1.09414 1.10833 1.23104 1.04228 1.03520 0.72679 1.22926 1.01558 0.90179 1.00172 1.21081 1.04545 0.96133 0.86089 1.21183 1.00189 0.95034 0.97365 0.93679 0.97402 0.91464 0.92535 0.75927 0.73558 0.81525 0.79991 0.83041 0.86534 0.86244 0.88363 0.83480 0.86701 0.85935 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.14 9.26 71.98 0.67 -6.48 16 2 C 0.29 15.87 2.56 44.24 0.11 15.99 16 3 H -0.01 -0.47 7.58 -2.39 -0.02 -0.49 16 4 C -0.55 -29.86 8.73 25.60 0.22 -29.64 16 5 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 6 C 0.01 0.59 5.30 84.66 0.45 1.03 16 7 N -0.92 -55.18 11.32 21.45 0.24 -54.94 16 8 Si 0.98 43.32 29.54 68.60 2.03 45.35 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 12 N -0.71 -31.26 5.07 -461.42 -2.34 -33.60 16 13 C 0.69 30.41 8.37 179.05 1.50 31.91 16 14 O -0.62 -34.80 13.44 -3.99 -0.05 -34.86 16 15 N -0.67 -21.17 5.34 -317.27 -1.70 -22.86 16 16 C 0.16 4.73 6.29 38.11 0.24 4.97 16 17 C -0.12 -2.29 9.96 22.44 0.22 -2.06 16 18 C -0.08 -1.17 10.02 22.21 0.22 -0.95 16 19 C -0.11 -2.17 9.67 22.53 0.22 -1.95 16 20 C -0.03 -0.78 5.87 -20.11 -0.12 -0.90 16 21 C 0.23 8.02 7.83 136.41 1.07 9.09 16 22 N -0.33 -14.80 11.99 -51.02 -0.61 -15.42 16 23 N -0.34 -13.57 12.20 -49.34 -0.60 -14.17 16 24 C 0.16 4.13 8.71 138.02 1.20 5.33 16 25 N -0.49 -11.35 3.61 -500.90 -1.81 -13.16 16 26 C 0.08 0.61 6.34 86.81 0.55 1.16 16 27 C -0.11 -0.19 7.16 31.61 0.23 0.03 16 28 C -0.04 -0.38 6.85 30.59 0.21 -0.17 16 29 C -0.11 -4.36 8.34 22.65 0.19 -4.17 16 30 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.41 14.35 8.56 -92.71 -0.79 13.55 16 35 H 0.43 9.21 8.84 -92.71 -0.82 8.39 16 36 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.15 1.71 6.44 -2.91 -0.02 1.69 16 39 H 0.12 0.44 8.00 -2.39 -0.02 0.42 16 40 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.15 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.10 5.04 6.10 -2.91 -0.02 5.02 16 Total: -1.00 -98.36 375.86 1.79 -96.58 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -0.56 Total: 23.87 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 7.18 Total: 23.20 kcal Atomic # 7 Polarization: -147.34 SS G_CDS: -6.81 Total: -154.15 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.05 Total: -34.86 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -98.36 1.79 -96.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156941770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.908 kcal (2) G-P(sol) polarization free energy of solvation -98.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds