Wall clock time and date at job start Sat Apr 11 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46885 * 2 1 4 4 C 1.50701 * 109.46963 * 120.00417 * 2 1 3 5 5 H 1.07999 * 119.99620 * 120.00751 * 4 2 1 6 6 C 1.37872 * 120.00075 * 299.99517 * 4 2 1 7 7 N 1.31517 * 120.00294 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99931 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.46843 * 89.99576 * 8 6 4 10 10 H 1.48500 * 109.47187 * 209.99428 * 8 6 4 11 11 H 1.48497 * 109.47141 * 329.99577 * 8 6 4 12 12 N 1.46498 * 109.46970 * 240.00479 * 2 1 3 13 13 C 1.46503 * 120.00105 * 296.12173 * 12 2 1 14 14 S 1.65603 * 120.00068 * 116.12565 * 12 2 1 15 15 O 1.42101 * 106.40165 * 161.74112 * 14 12 2 16 16 O 1.42100 * 106.40181 * 28.82419 * 14 12 2 17 17 N 1.65596 * 107.21962 * 275.28515 * 14 12 2 18 18 C 1.47421 * 125.64929 * 82.48192 * 17 14 12 19 19 C 1.54909 * 104.83501 * 204.15179 * 18 17 14 20 20 C 1.55163 * 101.57892 * 322.99195 * 19 18 17 21 21 C 1.47020 * 125.64539 * 262.51136 * 17 14 12 22 22 H 1.08997 * 110.01487 * 59.42860 * 21 17 14 23 23 C 1.50697 * 109.88237 * 298.33325 * 21 17 14 24 24 C 1.34850 * 125.89121 * 0.06788 * 23 21 17 25 25 C 1.40888 * 107.41623 * 180.02562 * 24 23 21 26 26 C 1.34853 * 107.41989 * 359.97438 * 25 24 23 27 27 N 1.36342 * 108.21596 * 0.26880 * 26 25 24 28 28 C 1.46505 * 125.63301 * 179.73400 * 27 26 25 29 29 H 1.09001 * 109.47414 * 66.65427 * 1 2 3 30 30 H 1.09005 * 109.47153 * 186.64769 * 1 2 3 31 31 H 1.08994 * 109.47246 * 306.64704 * 1 2 3 32 32 H 0.97000 * 120.00262 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47275 * 270.00256 * 13 12 2 34 34 H 1.09002 * 109.46990 * 30.00540 * 13 12 2 35 35 H 1.09002 * 109.47277 * 150.00051 * 13 12 2 36 36 H 1.09002 * 110.36652 * 85.31531 * 18 17 14 37 37 H 1.09005 * 110.36543 * 322.99235 * 18 17 14 38 38 H 1.08993 * 111.00664 * 204.92121 * 19 18 17 39 39 H 1.09002 * 111.03661 * 81.07775 * 19 18 17 40 40 H 1.08995 * 110.72149 * 277.13811 * 20 19 18 41 41 H 1.09002 * 110.87150 * 153.93497 * 20 19 18 42 42 H 1.07999 * 126.29275 * 359.97438 * 24 23 21 43 43 H 1.08008 * 126.29197 * 179.97438 * 25 24 23 44 44 H 1.07997 * 125.88698 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.46707 * 90.02263 * 28 27 26 46 46 H 1.08995 * 109.46647 * 210.02166 * 28 27 26 47 47 H 1.08997 * 109.47009 * 330.02275 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8726 2.6997 10 1 0.9759 1.9949 3.9069 11 1 0.8472 2.1765 1.4922 12 7 2.0183 -0.6905 -1.1962 13 6 1.7358 -2.1154 -1.3861 14 16 2.8897 0.1396 -2.3338 15 8 3.5673 -0.8375 -3.1119 16 8 3.5603 1.1841 -1.6420 17 7 1.8026 0.8718 -3.3458 18 6 1.1170 2.1515 -3.0895 19 6 -0.1735 2.0883 -3.9440 20 6 0.3296 1.3523 -5.2139 21 6 1.3609 0.3530 -4.6486 22 1 0.8981 -0.6258 -4.5229 23 6 2.5377 0.2470 -5.5838 24 6 3.8130 0.5724 -5.2898 25 6 4.5876 0.3232 -6.4400 26 6 3.7564 -0.1454 -7.3928 27 7 2.4959 -0.1891 -6.8750 28 6 1.2955 -0.6343 -7.5872 29 1 -0.3634 0.4072 -0.9435 30 1 -0.3634 -1.0208 0.1190 31 1 -0.3633 0.6134 0.8245 32 1 1.9034 -0.5281 4.4375 33 1 2.5356 -2.7070 -0.9406 34 1 0.7891 -2.3651 -0.9070 35 1 1.6724 -2.3344 -2.4520 36 1 1.7415 2.9867 -3.4068 37 1 0.8679 2.2433 -2.0323 38 1 -0.5301 3.0889 -4.1879 39 1 -0.9488 1.5116 -3.4396 40 1 0.8064 2.0511 -5.9012 41 1 -0.4875 0.8257 -5.7070 42 1 4.1739 0.9545 -4.3464 43 1 5.6517 0.4790 -6.5401 44 1 4.0397 -0.4325 -8.3947 45 1 1.1633 -1.7064 -7.4413 46 1 0.4255 -0.1047 -7.1991 47 1 1.4048 -0.4231 -8.6509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282953301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:50 Heat of formation + Delta-G solvation = 4.494826 kcal Electronic energy + Delta-G solvation = -30239.896371 eV Core-core repulsion = 26358.622889 eV Total energy + Delta-G solvation = -3881.273483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29078 -38.30391 -36.74243 -36.37158 -35.27181 -32.96166 -32.48226 -30.97547 -30.63303 -30.05362 -26.98991 -26.40496 -25.70786 -25.06646 -22.73623 -21.55602 -20.95636 -20.25919 -19.55437 -18.32106 -17.64630 -17.27008 -16.84792 -16.21295 -15.91298 -15.33652 -15.24331 -14.71557 -14.12757 -13.96252 -13.74156 -13.42593 -13.31101 -13.24815 -13.08984 -12.94044 -12.73022 -12.50503 -12.32292 -12.15852 -12.06170 -11.91611 -11.89572 -11.46938 -11.42093 -11.36065 -11.29190 -11.22683 -11.16769 -11.02778 -10.87262 -10.47097 -10.19404 -9.61899 -9.38623 -9.05748 -8.64187 -8.45103 -8.11144 -7.85735 -6.12661 -4.13176 1.03838 2.29664 2.89440 3.20992 3.21444 3.31678 3.35196 3.41200 4.00105 4.30885 4.34030 4.48172 4.58048 4.64383 4.89425 4.94199 4.99779 5.11701 5.17042 5.17458 5.18765 5.42510 5.47086 5.53926 5.66499 5.67034 5.72181 5.74839 5.84208 6.04957 6.05801 6.10582 6.14930 6.25176 6.29829 6.39694 6.43584 6.47127 6.51060 6.61824 6.81201 7.13272 7.28170 7.29942 7.40133 7.43649 7.63689 8.47352 8.91821 9.46975 11.00413 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.004154 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.288259 B = 6739.667517 C = 7260.700670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.239 3.761 3 H 0.053 0.947 4 C -0.521 4.521 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.881 3.119 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.265 1.265 12 N -0.984 5.984 13 C 0.112 3.888 14 S 2.785 3.215 15 O -0.968 6.968 16 O -0.970 6.970 17 N -1.009 6.009 18 C 0.119 3.881 19 C -0.128 4.128 20 C -0.124 4.124 21 C 0.230 3.770 22 H 0.079 0.921 23 C 0.001 3.999 24 C -0.157 4.157 25 C -0.196 4.196 26 C -0.019 4.019 27 N -0.446 5.446 28 C 0.069 3.931 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.266 0.734 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.134 0.866 44 H 0.160 0.840 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 3.334 -22.753 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.134 3.866 3 H 0.071 0.929 4 C -0.560 4.560 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.711 3.289 9 H -0.204 1.204 10 H -0.220 1.220 11 H -0.190 1.190 12 N -0.826 5.826 13 C -0.034 4.034 14 S 2.796 3.204 15 O -0.952 6.952 16 O -0.954 6.954 17 N -0.846 5.846 18 C -0.006 4.006 19 C -0.166 4.166 20 C -0.163 4.163 21 C 0.121 3.879 22 H 0.097 0.903 23 C -0.111 4.111 24 C -0.182 4.182 25 C -0.221 4.221 26 C -0.148 4.148 27 N -0.123 5.123 28 C -0.073 4.073 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.132 0.868 43 H 0.152 0.848 44 H 0.177 0.823 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.609 3.218 -22.721 23.880 hybrid contribution -0.879 0.582 0.389 1.123 sum -7.488 3.800 -22.331 23.858 Atomic orbital electron populations 1.22528 0.99223 1.01714 0.98794 1.19075 0.90260 0.93459 0.83815 0.92935 1.21132 1.32488 1.14280 0.88108 0.89952 1.24898 0.95743 0.96538 0.95686 1.69873 1.45162 1.40172 0.97948 0.86965 0.80548 0.83908 0.77504 1.20359 1.22005 1.18980 1.57563 1.73266 1.18090 1.33640 1.21157 1.02245 0.80841 0.99176 1.01987 0.73251 0.73251 0.71949 1.93641 1.70660 1.60722 1.70142 1.93607 1.70603 1.57874 1.73298 1.59363 1.63181 1.32907 1.29198 1.21985 0.92678 0.85482 1.00479 1.22778 0.97301 1.01177 0.95391 1.22757 0.97388 0.98003 0.98107 1.19332 0.89929 0.97524 0.81072 0.90318 1.20423 0.96864 1.08040 0.85764 1.20369 0.92131 1.07227 0.98477 1.20824 0.99130 1.08214 0.93889 1.21666 0.83234 1.09930 0.99954 1.43619 1.07384 1.51213 1.10134 1.22063 0.86725 1.00958 0.97528 0.94725 0.92073 0.93421 0.92437 0.92818 0.91012 0.93069 0.91222 0.90270 0.89958 0.90273 0.90347 0.90305 0.86773 0.84837 0.82303 0.91110 0.89866 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.50 37.16 0.32 -2.96 16 2 C 0.24 5.56 2.22 -69.08 -0.15 5.41 16 3 H 0.05 1.30 6.06 -51.93 -0.31 0.98 16 4 C -0.52 -14.46 8.90 -34.44 -0.31 -14.76 16 5 H 0.08 2.49 7.67 -52.49 -0.40 2.08 16 6 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 8 Si 0.88 21.27 24.30 -169.99 -4.13 17.14 16 9 H -0.28 -6.33 6.93 56.52 0.39 -5.94 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 12 N -0.98 -20.35 3.12 -115.85 -0.36 -20.71 16 13 C 0.11 2.03 9.38 59.85 0.56 2.59 16 14 S 2.78 55.96 4.91 -107.50 -0.53 55.43 16 15 O -0.97 -20.42 13.57 -57.17 -0.78 -21.19 16 16 O -0.97 -22.88 16.53 -57.17 -0.94 -23.82 16 17 N -1.01 -15.57 3.09 -105.64 -0.33 -15.90 16 18 C 0.12 1.56 7.06 -2.53 -0.02 1.54 16 19 C -0.13 -1.17 7.09 -24.58 -0.17 -1.35 16 20 C -0.12 -1.10 5.27 -24.89 -0.13 -1.24 16 21 C 0.23 2.93 3.17 -68.11 -0.22 2.71 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 23 C 0.00 0.02 5.54 -81.79 -0.45 -0.44 16 24 C -0.16 -2.66 8.17 -39.78 -0.33 -2.99 16 25 C -0.20 -2.85 10.86 -39.78 -0.43 -3.29 16 26 C -0.02 -0.22 11.43 -16.75 -0.19 -0.42 16 27 N -0.45 -5.20 3.15 -119.90 -0.38 -5.57 16 28 C 0.07 0.48 10.89 59.85 0.65 1.13 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.19 7.07 -51.93 -0.37 0.82 16 31 H 0.05 0.99 3.48 -51.93 -0.18 0.81 16 32 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 34 H 0.07 1.22 6.77 -51.93 -0.35 0.87 16 35 H 0.05 0.79 7.65 -51.93 -0.40 0.39 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 41 H 0.08 0.50 7.16 -51.93 -0.37 0.13 16 42 H 0.11 2.15 6.04 -52.49 -0.32 1.83 16 43 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 44 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.46 5.66 -51.93 -0.29 0.17 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -35.80 370.12 -9.29 -45.09 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.23 Total: 2.20 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.97 Total: -12.04 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -0.29 Total: -68.39 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -1.72 Total: -45.01 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.13 Total: 17.14 kcal Atomic # 16 Polarization: 55.96 SS G_CDS: -0.53 Total: 55.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.80 -9.29 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282953301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.584 kcal (2) G-P(sol) polarization free energy of solvation -35.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds