Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.28859 * 2 1 4 4 C 1.54667 * 110.40048 * 238.00684 * 2 1 3 5 5 C 1.54628 * 101.68474 * 266.73803 * 4 2 1 6 6 H 1.08994 * 110.60040 * 216.25265 * 5 4 2 7 7 N 1.46508 * 110.48482 * 93.66027 * 5 4 2 8 8 C 1.38826 * 119.99668 * 158.77342 * 7 5 4 9 9 C 1.39799 * 119.58352 * 359.97438 * 8 7 5 10 10 C 1.38600 * 119.48832 * 179.97438 * 9 8 7 11 11 C 1.38383 * 118.67761 * 0.02562 * 10 9 8 12 12 C 1.40554 * 119.15534 * 359.97438 * 11 10 9 13 13 C 1.41309 * 119.78518 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00602 * 359.97438 * 13 12 11 15 15 C 1.40031 * 120.00212 * 180.02562 * 13 12 11 16 16 N 1.30744 * 119.99575 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00488 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47129 * 59.99480 * 17 15 13 19 19 H 1.48499 * 109.47295 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46971 * 300.00003 * 17 15 13 21 21 N 1.31952 * 119.58119 * 179.73204 * 8 7 5 22 22 C 1.51286 * 104.19575 * 334.98716 * 5 4 2 23 23 O 1.21303 * 124.94381 * 196.23016 * 22 5 4 24 24 N 1.34422 * 110.11208 * 16.25041 * 22 5 4 25 25 C 1.40770 * 124.34489 * 180.40886 * 24 22 5 26 26 C 1.40255 * 126.07839 * 179.71483 * 25 24 22 27 27 N 1.30823 * 108.33553 * 180.26294 * 26 25 24 28 28 N 1.40069 * 108.37018 * 0.02562 * 27 26 25 29 29 C 1.46501 * 126.05442 * 179.97438 * 28 27 26 30 30 C 1.35755 * 126.08118 * 0.02803 * 25 24 22 31 31 H 1.09000 * 109.47117 * 299.47704 * 1 2 3 32 32 H 1.09005 * 109.47173 * 59.47544 * 1 2 3 33 33 H 1.09000 * 109.46920 * 179.47706 * 1 2 3 34 34 H 1.09000 * 111.19391 * 148.56414 * 4 2 1 35 35 H 1.09004 * 110.84844 * 24.75990 * 4 2 1 36 36 H 0.96991 * 120.00078 * 338.77854 * 7 5 4 37 37 H 1.07994 * 120.25624 * 0.03122 * 9 8 7 38 38 H 1.07993 * 120.65792 * 180.02562 * 10 9 8 39 39 H 1.08007 * 120.42161 * 179.97438 * 11 10 9 40 40 H 0.96999 * 120.00031 * 180.02562 * 16 15 13 41 41 H 1.07998 * 125.83093 * 0.24573 * 26 25 24 42 42 H 1.08995 * 109.47507 * 270.03710 * 29 28 27 43 43 H 1.09000 * 109.46996 * 30.04078 * 29 28 27 44 44 H 1.09006 * 109.47220 * 150.03922 * 29 28 27 45 45 H 1.08003 * 126.21589 * 359.75685 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0691 -0.7681 -1.2295 5 6 2.2590 -2.1898 -0.6520 6 1 3.1426 -2.6628 -1.0803 7 7 1.0693 -3.0077 -0.9013 8 6 1.1622 -4.3926 -0.8802 9 6 2.3955 -4.9977 -0.6206 10 6 2.4859 -6.3806 -0.5994 11 6 1.3437 -7.1245 -0.8383 12 6 0.1330 -6.4576 -1.0933 13 6 -1.0415 -7.2041 -1.3384 14 1 -1.0070 -8.2835 -1.3299 15 6 -2.2500 -6.5443 -1.5935 16 7 -2.2917 -5.2376 -1.6043 17 14 -3.8025 -7.5311 -1.9182 18 1 -4.1015 -8.3852 -0.7408 19 1 -4.9374 -6.6038 -2.1576 20 1 -3.6028 -8.3887 -3.1139 21 7 0.0844 -5.1213 -1.1006 22 6 2.4455 -1.9654 0.8325 23 8 2.8969 -2.7823 1.6073 24 7 2.0379 -0.7292 1.1679 25 6 2.0864 -0.2038 2.4730 26 6 1.6770 1.0800 2.8622 27 7 1.8791 1.2040 4.1488 28 7 2.4247 0.0060 4.6274 29 6 2.8007 -0.2766 6.0148 30 6 2.5432 -0.8474 3.5775 31 1 -0.3633 0.5057 0.8946 32 1 -0.3634 0.5220 -0.8853 33 1 -0.3633 -1.0276 -0.0094 34 1 3.0192 -0.3541 -1.5672 35 1 1.3373 -0.7697 -2.0374 36 1 0.2168 -2.5815 -1.0812 37 1 3.2707 -4.3923 -0.4371 38 1 3.4289 -6.8678 -0.4005 39 1 1.3822 -8.2039 -0.8290 40 1 -3.1289 -4.7805 -1.7806 41 1 1.2655 1.8369 2.2110 42 1 3.8395 0.0113 6.1757 43 1 2.1580 0.2906 6.6881 44 1 2.6841 -1.3421 6.2131 45 1 2.9310 -1.8547 3.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771658978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 81.951400 kcal Electronic energy + Delta-G solvation = -29664.274442 eV Core-core repulsion = 25683.208528 eV Total energy + Delta-G solvation = -3981.065914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.60949 -41.40992 -39.91804 -37.97766 -36.52945 -35.17515 -34.14100 -32.98099 -32.26551 -31.25130 -30.24560 -29.34875 -27.44135 -27.27721 -25.69183 -23.58877 -23.19380 -22.97042 -22.26489 -21.15870 -20.32081 -19.27200 -18.80363 -17.96736 -17.34115 -17.00824 -16.79691 -16.47803 -16.25652 -16.21070 -15.60814 -15.57002 -15.23544 -14.88073 -14.63988 -14.58101 -14.21234 -14.02131 -13.79998 -13.78328 -13.61041 -13.54439 -13.20983 -13.06128 -12.86218 -12.73785 -12.57537 -12.40920 -12.14639 -12.00600 -11.81999 -11.74929 -11.55388 -11.23688 -11.09183 -10.49561 -10.46886 -9.83588 -9.46805 -8.68198 -8.36706 -8.22717 -6.45837 0.68362 1.04704 1.15617 1.31819 1.37598 1.42138 1.53647 1.60077 1.93362 2.08766 2.26177 2.71281 2.92316 3.26361 3.36410 3.66125 3.86011 3.91770 3.99668 4.08042 4.20756 4.27828 4.37588 4.38511 4.45730 4.51275 4.61962 4.64297 4.73847 4.83733 4.89038 4.93658 4.97525 4.99783 5.02524 5.12724 5.22168 5.34878 5.37545 5.71164 5.78170 5.95097 5.96257 6.03675 6.06153 6.22312 6.49536 6.57095 6.81278 6.90532 7.10420 7.19423 8.31517 8.51426 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.003022 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.594840 B = 9263.179298 C = 9444.531388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 H 0.133 0.867 4 C -0.122 4.122 5 C 0.136 3.864 6 H 0.109 0.891 7 N -0.707 5.707 8 C 0.395 3.605 9 C -0.350 4.350 10 C -0.035 4.035 11 C -0.341 4.341 12 C 0.258 3.742 13 C -0.472 4.472 14 H 0.085 0.915 15 C 0.027 3.973 16 N -0.749 5.749 17 Si 0.986 3.014 18 H -0.264 1.264 19 H -0.266 1.266 20 H -0.259 1.259 21 N -0.557 5.557 22 C 0.488 3.512 23 O -0.554 6.554 24 N -0.525 5.525 25 C -0.003 4.003 26 C 0.046 3.954 27 N -0.300 5.300 28 N -0.376 5.376 29 C 0.097 3.903 30 C 0.017 3.983 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.032 0.968 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.401 0.599 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.277 0.723 41 H 0.219 0.781 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 17.379 4.548 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.026 3.974 3 H 0.151 0.849 4 C -0.159 4.159 5 C 0.026 3.974 6 H 0.126 0.874 7 N -0.345 5.345 8 C 0.155 3.845 9 C -0.376 4.376 10 C -0.059 4.059 11 C -0.364 4.364 12 C 0.131 3.869 13 C -0.504 4.504 14 H 0.103 0.897 15 C -0.195 4.195 16 N -0.371 5.371 17 Si 0.806 3.194 18 H -0.188 1.188 19 H -0.191 1.191 20 H -0.183 1.183 21 N -0.279 5.279 22 C 0.274 3.726 23 O -0.430 6.430 24 N -0.251 5.251 25 C -0.106 4.106 26 C -0.142 4.142 27 N -0.122 5.122 28 N -0.162 5.162 29 C -0.042 4.042 30 C -0.130 4.130 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.051 0.949 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.238 0.762 37 H 0.128 0.872 38 H 0.141 0.859 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.691 18.302 5.996 20.083 hybrid contribution 0.028 -1.837 -0.297 1.861 sum 5.719 16.465 5.699 18.338 Atomic orbital electron populations 1.22284 0.93964 1.01831 1.04252 1.22144 0.94939 0.97998 0.82308 0.84902 1.23158 1.05951 0.89561 0.97279 1.21481 0.91086 0.94460 0.90387 0.87371 1.44009 1.10447 1.01088 1.78987 1.18878 0.90025 0.85903 0.89743 1.20895 0.97230 0.95094 1.24382 1.20971 0.97214 0.93648 0.94054 1.21682 0.94957 0.98927 1.20870 1.18641 0.92671 0.87836 0.87711 1.19879 0.92880 0.94475 1.43138 0.89703 1.26920 1.03427 0.96078 0.93043 1.70220 1.27683 1.09796 1.29382 0.85228 0.75902 0.78614 0.79670 1.18842 1.19057 1.18331 1.68161 1.26801 1.06688 1.26246 1.22260 0.76578 0.80836 0.92890 1.90622 1.46183 1.48067 1.58155 1.45491 1.59286 1.14437 1.05880 1.17850 1.12063 0.95520 0.85143 1.24047 1.01627 0.95762 0.92741 1.77187 1.18650 1.04685 1.11725 1.48636 1.49309 1.09410 1.08839 1.22174 1.02690 1.03839 0.75523 1.22470 1.05164 0.97841 0.87548 0.91777 0.87724 0.94904 0.85040 0.86377 0.76190 0.87238 0.85913 0.88009 0.91264 0.76492 0.89088 0.88004 0.88354 0.81119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.46 71.98 0.68 -2.27 16 2 C 0.13 2.15 3.28 45.51 0.15 2.30 16 3 H 0.13 1.26 8.13 -2.39 -0.02 1.24 16 4 C -0.12 -2.03 6.31 31.72 0.20 -1.83 16 5 C 0.14 4.05 2.85 44.98 0.13 4.17 16 6 H 0.11 3.28 6.56 -2.39 -0.02 3.27 16 7 N -0.71 -27.51 5.19 -324.47 -1.68 -29.19 16 8 C 0.39 19.80 7.64 133.42 1.02 20.82 16 9 C -0.35 -17.00 9.08 22.73 0.21 -16.79 16 10 C -0.03 -1.69 10.15 22.39 0.23 -1.46 16 11 C -0.34 -18.32 9.83 22.87 0.22 -18.10 16 12 C 0.26 15.15 6.55 40.18 0.26 15.42 16 13 C -0.47 -26.74 9.14 23.46 0.21 -26.52 16 14 H 0.08 4.53 7.85 -2.91 -0.02 4.51 16 15 C 0.03 1.42 5.50 85.29 0.47 1.89 16 16 N -0.75 -40.39 11.46 21.84 0.25 -40.14 16 17 Si 0.99 38.98 29.56 68.60 2.03 41.01 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 N -0.56 -31.92 7.89 -186.59 -1.47 -33.39 16 22 C 0.49 16.55 7.59 87.90 0.67 17.22 16 23 O -0.55 -23.52 15.09 -3.10 -0.05 -23.57 16 24 N -0.52 -13.79 2.81 -605.82 -1.70 -15.49 16 25 C 0.00 -0.08 6.78 37.62 0.25 0.17 16 26 C 0.05 1.00 11.49 85.33 0.98 1.98 16 27 N -0.30 -7.46 12.56 -56.78 -0.71 -8.17 16 28 N -0.38 -9.16 4.04 -368.47 -1.49 -10.64 16 29 C 0.10 1.45 11.48 127.77 1.47 2.92 16 30 C 0.02 0.50 10.69 83.50 0.89 1.39 16 31 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 32 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.03 0.84 6.47 -2.39 -0.02 0.83 16 34 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 1.73 7.79 -2.39 -0.02 1.71 16 36 H 0.40 15.21 7.14 -92.72 -0.66 14.55 16 37 H 0.11 4.88 5.87 -2.91 -0.02 4.86 16 38 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 39 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 40 H 0.28 13.43 8.29 -92.71 -0.77 12.66 16 41 H 0.22 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.17 5.52 6.51 -2.91 -0.02 5.50 16 Total: -1.00 -80.46 375.32 3.59 -76.86 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: 0.37 Total: 41.43 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 8.05 Total: 1.31 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -6.81 Total: -137.04 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -80.46 3.59 -76.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771658978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.816 kcal (2) G-P(sol) polarization free energy of solvation -80.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds