Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.21556 * 2 1 4 4 C 1.54482 * 110.32161 * 121.98201 * 2 1 3 5 5 C 1.54625 * 101.76826 * 93.62023 * 4 2 1 6 6 H 1.08997 * 110.48902 * 143.47422 * 5 4 2 7 7 N 1.46498 * 110.48860 * 265.99288 * 5 4 2 8 8 C 1.38828 * 120.00064 * 204.99724 * 7 5 4 9 9 C 1.39801 * 119.58090 * 359.72756 * 8 7 5 10 10 C 1.38600 * 119.48539 * 179.76749 * 9 8 7 11 11 C 1.38389 * 118.68154 * 0.49234 * 10 9 8 12 12 C 1.40548 * 119.15074 * 359.74995 * 11 10 9 13 13 C 1.41318 * 119.78723 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99516 * 359.97438 * 13 12 11 15 15 C 1.40021 * 120.00506 * 179.97438 * 13 12 11 16 16 N 1.30742 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00274 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47004 * 90.00021 * 17 15 13 19 19 H 1.48500 * 109.46894 * 210.00203 * 17 15 13 20 20 H 1.48507 * 109.47013 * 330.00178 * 17 15 13 21 21 N 1.31954 * 119.58513 * 179.97438 * 8 7 5 22 22 C 1.51293 * 104.25706 * 24.58215 * 5 4 2 23 23 O 1.21297 * 124.94759 * 164.01150 * 22 5 4 24 24 N 1.34421 * 110.10989 * 344.14258 * 22 5 4 25 25 C 1.40764 * 124.34673 * 179.43460 * 24 22 5 26 26 C 1.40257 * 126.07616 * 179.72501 * 25 24 22 27 27 N 1.30837 * 108.33216 * 179.77151 * 26 25 24 28 28 N 1.40062 * 108.36873 * 0.23238 * 27 26 25 29 29 C 1.46506 * 126.05382 * 179.97438 * 28 27 26 30 30 C 1.35755 * 126.08177 * 359.90305 * 25 24 22 31 31 H 1.09004 * 109.47095 * 180.47693 * 1 2 3 32 32 H 1.08994 * 109.46760 * 300.47131 * 1 2 3 33 33 H 1.08993 * 109.47013 * 60.47577 * 1 2 3 34 34 H 1.08997 * 110.97213 * 211.73976 * 4 2 1 35 35 H 1.09008 * 110.96727 * 335.50288 * 4 2 1 36 36 H 0.97003 * 120.00490 * 24.99321 * 7 5 4 37 37 H 1.08002 * 120.25526 * 359.97438 * 9 8 7 38 38 H 1.08004 * 120.65354 * 180.24044 * 10 9 8 39 39 H 1.08002 * 120.42344 * 179.76992 * 11 10 9 40 40 H 0.97005 * 120.00262 * 179.97438 * 16 15 13 41 41 H 1.08002 * 125.83753 * 0.04469 * 26 25 24 42 42 H 1.09005 * 109.46755 * 90.02747 * 29 28 27 43 43 H 1.09000 * 109.47356 * 210.02560 * 29 28 27 44 44 H 1.08999 * 109.46984 * 330.02912 * 29 28 27 45 45 H 1.07988 * 126.21969 * 359.97438 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0228 0.0000 4 6 2.0665 -0.7673 1.2288 5 6 2.2657 -2.1878 0.6513 6 1 3.1526 -2.6534 1.0810 7 7 1.0820 -3.0138 0.9019 8 6 1.1993 -4.3959 0.9585 9 6 2.4503 -4.9906 0.7695 10 6 2.5661 -6.3704 0.8312 11 6 1.4290 -7.1223 1.0697 12 6 0.1988 -6.4660 1.2463 13 6 -0.9707 -7.2205 1.4911 14 1 -0.9173 -8.2981 1.5416 15 6 -2.1986 -6.5713 1.6683 16 7 -2.2632 -5.2670 1.6068 17 14 -3.7443 -7.5688 1.9926 18 1 -3.9145 -7.7562 3.4559 19 1 -4.9220 -6.8485 1.4455 20 1 -3.6251 -8.8946 1.3343 21 7 0.1279 -5.1320 1.1851 22 6 2.4473 -1.9641 -0.8339 23 8 2.8990 -2.7802 -1.6094 24 7 2.0379 -0.7283 -1.1687 25 6 2.0847 -0.2023 -2.4735 26 6 1.6632 1.0772 -2.8639 27 7 1.8672 1.2030 -4.1501 28 7 2.4205 0.0084 -4.6282 29 6 2.7998 -0.2717 -6.0153 30 6 2.5427 -0.8445 -3.5784 31 1 -0.3633 -1.0277 0.0086 32 1 -0.3632 0.5211 0.8857 33 1 -0.3633 0.5064 -0.8942 34 1 3.0137 -0.3477 1.5677 35 1 1.3334 -0.7734 2.0355 36 1 0.2162 -2.5950 1.0283 37 1 3.3204 -4.3794 0.5801 38 1 3.5240 -6.8494 0.6919 39 1 1.4863 -8.1996 1.1198 40 1 -3.1139 -4.8171 1.7292 41 1 1.2461 1.8315 -2.2132 42 1 3.8375 0.0215 -6.1745 43 1 2.6889 -1.3376 -6.2142 44 1 2.1553 0.2927 -6.6893 45 1 2.9367 -1.8493 -3.6151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771658979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 104.261410 kcal Electronic energy + Delta-G solvation = -29622.817674 eV Core-core repulsion = 25642.719195 eV Total energy + Delta-G solvation = -3980.098479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57182 -40.28927 -38.08250 -36.74125 -35.03073 -33.52357 -33.00369 -31.83625 -30.49034 -29.81260 -29.11068 -27.95354 -26.57167 -25.35505 -24.61004 -22.25676 -22.03389 -21.41178 -20.66797 -20.12671 -19.14034 -17.68148 -17.41294 -16.46272 -15.99750 -15.92921 -15.58510 -15.26519 -14.70010 -14.65714 -14.50923 -14.09884 -13.91965 -13.80191 -13.30785 -13.12310 -12.96384 -12.84045 -12.77774 -12.73105 -12.43540 -12.23467 -12.06227 -11.84606 -11.46058 -11.23052 -11.01521 -10.96659 -10.85865 -10.54120 -10.36627 -10.23874 -10.13847 -9.88986 -9.52260 -9.37811 -8.82619 -7.88884 -7.62998 -7.50860 -6.58017 -6.31407 -4.43462 1.72378 2.24296 2.31680 2.88228 2.98541 3.12295 3.13833 3.15842 3.26695 3.32522 4.00201 4.13555 4.29236 4.30015 4.52456 4.77157 4.85990 4.87284 4.89700 4.95721 5.04510 5.10563 5.20101 5.41364 5.52471 5.59245 5.66906 5.69373 5.74665 5.83400 6.08769 6.10587 6.15031 6.22495 6.64661 6.73831 6.86079 6.90216 6.94694 6.97031 7.13945 7.26036 7.54825 7.60443 7.80623 7.94890 8.15210 8.32413 8.33411 8.61403 8.81712 9.11837 10.24467 10.41393 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.002999 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.503288 B = 9335.458016 C = 9542.090716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.132 3.868 3 H 0.091 0.909 4 C -0.139 4.139 5 C 0.144 3.856 6 H 0.115 0.885 7 N -0.716 5.716 8 C 0.406 3.594 9 C -0.349 4.349 10 C -0.033 4.033 11 C -0.313 4.313 12 C 0.291 3.709 13 C -0.435 4.435 14 H 0.083 0.917 15 C 0.072 3.928 16 N -0.718 5.718 17 Si 0.904 3.096 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.262 1.262 21 N -0.526 5.526 22 C 0.501 3.499 23 O -0.506 6.506 24 N -0.534 5.534 25 C 0.017 3.983 26 C 0.035 3.965 27 N -0.285 5.285 28 N -0.376 5.376 29 C 0.108 3.892 30 C 0.035 3.965 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.399 0.601 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.268 0.732 41 H 0.184 0.816 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 14.926 -5.366 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.028 3.972 3 H 0.109 0.891 4 C -0.177 4.177 5 C 0.032 3.968 6 H 0.133 0.867 7 N -0.355 5.355 8 C 0.167 3.833 9 C -0.374 4.374 10 C -0.057 4.057 11 C -0.336 4.336 12 C 0.165 3.835 13 C -0.467 4.467 14 H 0.101 0.899 15 C -0.153 4.153 16 N -0.340 5.340 17 Si 0.729 3.271 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.186 1.186 21 N -0.247 5.247 22 C 0.287 3.713 23 O -0.378 6.378 24 N -0.262 5.262 25 C -0.085 4.085 26 C -0.153 4.153 27 N -0.107 5.107 28 N -0.162 5.162 29 C -0.033 4.033 30 C -0.112 4.112 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.236 0.764 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.201 0.799 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.887 15.755 -6.856 18.163 hybrid contribution -0.176 -1.176 0.610 1.336 sum 5.712 14.579 -6.247 16.858 Atomic orbital electron populations 1.22287 0.93939 1.03763 1.02663 1.21721 0.95023 0.96439 0.83974 0.89101 1.23042 1.03624 0.93856 0.97200 1.21208 0.93085 0.91880 0.90633 0.86705 1.43920 1.07903 1.02945 1.80755 1.18459 0.90288 0.83934 0.90581 1.20630 0.96245 0.94978 1.25584 1.20601 0.96558 0.93320 0.95217 1.21542 0.94338 0.98401 1.19343 1.18169 0.91432 0.86988 0.86936 1.19559 0.91011 0.94225 1.41941 0.89932 1.26027 1.00506 0.94954 0.93771 1.70146 1.25659 1.08556 1.29640 0.86387 0.80658 0.80770 0.79297 1.19522 1.20306 1.18640 1.68153 1.25991 1.06281 1.24302 1.21982 0.76632 0.80195 0.92540 1.90652 1.43788 1.46421 1.56945 1.45416 1.60677 1.15174 1.04884 1.17575 1.11152 0.94659 0.85159 1.23584 1.02695 0.96156 0.92849 1.77224 1.18042 1.04387 1.11061 1.48290 1.49725 1.10218 1.07950 1.21830 1.01339 1.02815 0.77348 1.22506 1.04506 0.97934 0.86210 0.91261 0.90707 0.91969 0.88632 0.87753 0.76383 0.88881 0.88890 0.88696 0.92049 0.79906 0.90807 0.89314 0.89326 0.79463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.45 37.16 0.35 -1.36 16 2 C 0.13 1.33 3.28 -67.01 -0.22 1.11 16 3 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 4 C -0.14 -1.39 6.31 -25.10 -0.16 -1.55 16 5 C 0.14 2.20 2.96 -67.94 -0.20 1.99 16 6 H 0.12 1.78 6.36 -51.93 -0.33 1.45 16 7 N -0.72 -13.82 5.21 -53.91 -0.28 -14.10 16 8 C 0.41 9.90 7.65 -155.32 -1.19 8.72 16 9 C -0.35 -8.26 9.25 -38.86 -0.36 -8.62 16 10 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 11 C -0.31 -8.08 9.83 -38.66 -0.38 -8.46 16 12 C 0.29 8.20 6.55 -85.00 -0.56 7.64 16 13 C -0.44 -11.89 9.14 -37.74 -0.34 -12.23 16 14 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 15 C 0.07 1.85 5.50 -17.35 -0.10 1.76 16 16 N -0.72 -18.97 11.46 55.55 0.64 -18.34 16 17 Si 0.90 18.83 29.56 -169.99 -5.02 13.80 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 21 N -0.53 -14.54 7.89 -10.33 -0.08 -14.62 16 22 C 0.50 8.47 7.61 -10.85 -0.08 8.39 16 23 O -0.51 -10.35 15.64 5.54 0.09 -10.26 16 24 N -0.53 -7.34 2.81 -105.45 -0.30 -7.64 16 25 C 0.02 0.24 6.78 -83.88 -0.57 -0.33 16 26 C 0.03 0.42 11.45 -17.22 -0.20 0.23 16 27 N -0.28 -3.77 12.56 30.71 0.39 -3.39 16 28 N -0.38 -4.68 4.04 -67.81 -0.27 -4.96 16 29 C 0.11 0.85 11.48 59.85 0.69 1.53 16 30 C 0.04 0.50 10.69 -16.68 -0.18 0.32 16 31 H 0.07 0.91 6.44 -51.93 -0.33 0.58 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.97 7.82 -51.92 -0.41 0.56 16 36 H 0.40 7.52 7.11 -40.82 -0.29 7.23 16 37 H 0.09 2.03 6.17 -52.49 -0.32 1.71 16 38 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 39 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.27 6.43 8.29 -40.82 -0.34 6.10 16 41 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.19 2.83 6.51 -52.49 -0.34 2.48 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -34.75 376.19 -8.87 -43.62 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -5.80 Total: 12.26 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.89 Total: -2.05 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.09 Total: -63.04 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.75 -8.87 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771658979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.878 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds