Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.21556 * 2 1 4 4 C 1.54482 * 110.32161 * 121.98201 * 2 1 3 5 5 C 1.54625 * 101.76826 * 93.62023 * 4 2 1 6 6 H 1.08997 * 110.48902 * 143.47422 * 5 4 2 7 7 N 1.46498 * 110.48860 * 265.99288 * 5 4 2 8 8 C 1.38828 * 120.00064 * 204.99724 * 7 5 4 9 9 C 1.39801 * 119.58090 * 359.72756 * 8 7 5 10 10 C 1.38600 * 119.48539 * 179.76749 * 9 8 7 11 11 C 1.38389 * 118.68154 * 0.49234 * 10 9 8 12 12 C 1.40548 * 119.15074 * 359.74995 * 11 10 9 13 13 C 1.41318 * 119.78723 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99516 * 359.97438 * 13 12 11 15 15 C 1.40021 * 120.00506 * 179.97438 * 13 12 11 16 16 N 1.30742 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00274 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47004 * 90.00021 * 17 15 13 19 19 H 1.48500 * 109.46894 * 210.00203 * 17 15 13 20 20 H 1.48507 * 109.47013 * 330.00178 * 17 15 13 21 21 N 1.31954 * 119.58513 * 179.97438 * 8 7 5 22 22 C 1.51293 * 104.25706 * 24.58215 * 5 4 2 23 23 O 1.21297 * 124.94759 * 164.01150 * 22 5 4 24 24 N 1.34421 * 110.10989 * 344.14258 * 22 5 4 25 25 C 1.40764 * 124.34673 * 179.43460 * 24 22 5 26 26 C 1.40257 * 126.07616 * 179.72501 * 25 24 22 27 27 N 1.30837 * 108.33216 * 179.77151 * 26 25 24 28 28 N 1.40062 * 108.36873 * 0.23238 * 27 26 25 29 29 C 1.46506 * 126.05382 * 179.97438 * 28 27 26 30 30 C 1.35755 * 126.08177 * 359.90305 * 25 24 22 31 31 H 1.09004 * 109.47095 * 180.47693 * 1 2 3 32 32 H 1.08994 * 109.46760 * 300.47131 * 1 2 3 33 33 H 1.08993 * 109.47013 * 60.47577 * 1 2 3 34 34 H 1.08997 * 110.97213 * 211.73976 * 4 2 1 35 35 H 1.09008 * 110.96727 * 335.50288 * 4 2 1 36 36 H 0.97003 * 120.00490 * 24.99321 * 7 5 4 37 37 H 1.08002 * 120.25526 * 359.97438 * 9 8 7 38 38 H 1.08004 * 120.65354 * 180.24044 * 10 9 8 39 39 H 1.08002 * 120.42344 * 179.76992 * 11 10 9 40 40 H 0.97005 * 120.00262 * 179.97438 * 16 15 13 41 41 H 1.08002 * 125.83753 * 0.04469 * 26 25 24 42 42 H 1.09005 * 109.46755 * 90.02747 * 29 28 27 43 43 H 1.09000 * 109.47356 * 210.02560 * 29 28 27 44 44 H 1.08999 * 109.46984 * 330.02912 * 29 28 27 45 45 H 1.07988 * 126.21969 * 359.97438 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0228 0.0000 4 6 2.0665 -0.7673 1.2288 5 6 2.2657 -2.1878 0.6513 6 1 3.1526 -2.6534 1.0810 7 7 1.0820 -3.0138 0.9019 8 6 1.1993 -4.3959 0.9585 9 6 2.4503 -4.9906 0.7695 10 6 2.5661 -6.3704 0.8312 11 6 1.4290 -7.1223 1.0697 12 6 0.1988 -6.4660 1.2463 13 6 -0.9707 -7.2205 1.4911 14 1 -0.9173 -8.2981 1.5416 15 6 -2.1986 -6.5713 1.6683 16 7 -2.2632 -5.2670 1.6068 17 14 -3.7443 -7.5688 1.9926 18 1 -3.9145 -7.7562 3.4559 19 1 -4.9220 -6.8485 1.4455 20 1 -3.6251 -8.8946 1.3343 21 7 0.1279 -5.1320 1.1851 22 6 2.4473 -1.9641 -0.8339 23 8 2.8990 -2.7802 -1.6094 24 7 2.0379 -0.7283 -1.1687 25 6 2.0847 -0.2023 -2.4735 26 6 1.6632 1.0772 -2.8639 27 7 1.8672 1.2030 -4.1501 28 7 2.4205 0.0084 -4.6282 29 6 2.7998 -0.2717 -6.0153 30 6 2.5427 -0.8445 -3.5784 31 1 -0.3633 -1.0277 0.0086 32 1 -0.3632 0.5211 0.8857 33 1 -0.3633 0.5064 -0.8942 34 1 3.0137 -0.3477 1.5677 35 1 1.3334 -0.7734 2.0355 36 1 0.2162 -2.5950 1.0283 37 1 3.3204 -4.3794 0.5801 38 1 3.5240 -6.8494 0.6919 39 1 1.4863 -8.1996 1.1198 40 1 -3.1139 -4.8171 1.7292 41 1 1.2461 1.8315 -2.2132 42 1 3.8375 0.0215 -6.1745 43 1 2.6889 -1.3376 -6.2142 44 1 2.1553 0.2927 -6.6893 45 1 2.9367 -1.8493 -3.6151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771658979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = 81.927466 kcal Electronic energy + Delta-G solvation = -29623.786147 eV Core-core repulsion = 25642.719195 eV Total energy + Delta-G solvation = -3981.066952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61268 -41.41080 -39.92689 -37.98988 -36.53407 -35.17768 -34.14298 -32.98609 -32.27369 -31.25371 -30.24751 -29.35344 -27.43926 -27.28657 -25.69698 -23.59257 -23.18373 -22.98364 -22.26679 -21.15981 -20.33015 -19.27564 -18.81278 -17.98751 -17.34028 -17.01246 -16.79524 -16.48282 -16.27045 -16.18941 -15.61350 -15.57189 -15.24150 -14.89018 -14.64172 -14.58467 -14.22385 -14.02446 -13.80372 -13.78890 -13.61135 -13.54377 -13.20752 -13.06739 -12.87421 -12.73080 -12.57268 -12.40968 -12.15280 -12.00856 -11.80492 -11.73634 -11.57900 -11.23735 -11.10193 -10.49991 -10.46913 -9.83867 -9.46989 -8.68659 -8.37002 -8.23030 -6.46148 0.68074 1.03729 1.14873 1.31705 1.37394 1.42146 1.54892 1.59185 1.92779 2.08213 2.25985 2.71139 2.91934 3.26254 3.36630 3.66303 3.86040 3.91500 3.99085 4.07853 4.20672 4.26901 4.37553 4.38538 4.45415 4.50635 4.61977 4.64169 4.73565 4.83536 4.89028 4.93672 4.97016 4.99780 5.02755 5.12485 5.22023 5.34391 5.37318 5.70916 5.77804 5.94739 5.95946 6.03318 6.05681 6.22322 6.49300 6.56939 6.80926 6.90161 7.09565 7.19055 8.31356 8.51217 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.002999 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.503288 B = 9335.458016 C = 9542.090716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 H 0.133 0.867 4 C -0.123 4.123 5 C 0.136 3.864 6 H 0.111 0.889 7 N -0.707 5.707 8 C 0.395 3.605 9 C -0.353 4.353 10 C -0.034 4.034 11 C -0.341 4.341 12 C 0.258 3.742 13 C -0.471 4.471 14 H 0.085 0.915 15 C 0.027 3.973 16 N -0.749 5.749 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.260 1.260 21 N -0.557 5.557 22 C 0.488 3.512 23 O -0.555 6.555 24 N -0.524 5.524 25 C -0.003 4.003 26 C 0.046 3.954 27 N -0.300 5.300 28 N -0.376 5.376 29 C 0.097 3.903 30 C 0.017 3.983 31 H 0.032 0.968 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.400 0.600 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.276 0.724 41 H 0.219 0.781 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 17.371 -4.857 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.026 3.974 3 H 0.151 0.849 4 C -0.161 4.161 5 C 0.025 3.975 6 H 0.129 0.871 7 N -0.345 5.345 8 C 0.155 3.845 9 C -0.378 4.378 10 C -0.058 4.058 11 C -0.364 4.364 12 C 0.131 3.869 13 C -0.503 4.503 14 H 0.103 0.897 15 C -0.195 4.195 16 N -0.371 5.371 17 Si 0.806 3.194 18 H -0.186 1.186 19 H -0.193 1.193 20 H -0.184 1.184 21 N -0.279 5.279 22 C 0.275 3.725 23 O -0.432 6.432 24 N -0.251 5.251 25 C -0.106 4.106 26 C -0.142 4.142 27 N -0.122 5.122 28 N -0.162 5.162 29 C -0.042 4.042 30 C -0.130 4.130 31 H 0.051 0.949 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.237 0.763 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.562 18.283 -6.363 20.142 hybrid contribution 0.033 -1.813 0.350 1.847 sum 5.595 16.471 -6.013 18.405 Atomic orbital electron populations 1.22289 0.93946 1.01815 1.04281 1.22112 0.94980 0.98012 0.82290 0.84895 1.23135 1.05913 0.89724 0.97283 1.21495 0.91336 0.94320 0.90327 0.87136 1.44009 1.09442 1.01391 1.79689 1.18881 0.90032 0.85901 0.89677 1.20900 0.96728 0.95305 1.24904 1.20980 0.97374 0.93561 0.93889 1.21685 0.94576 0.99005 1.21143 1.18654 0.92674 0.87871 0.87676 1.19904 0.92184 0.94600 1.43568 0.89693 1.26923 1.03456 0.96128 0.92983 1.70230 1.26994 1.10159 1.29730 0.85168 0.75953 0.78872 0.79399 1.18584 1.19304 1.18381 1.68162 1.27473 1.06480 1.25826 1.22248 0.76556 0.80827 0.92883 1.90618 1.46248 1.48163 1.58148 1.45485 1.59249 1.14433 1.05886 1.17848 1.11999 0.95639 0.85104 1.24054 1.01560 0.95821 0.92731 1.77192 1.18483 1.04808 1.11757 1.48640 1.49097 1.09579 1.08866 1.22178 1.02651 1.03871 0.75532 1.22470 1.05169 0.97841 0.87525 0.94912 0.87749 0.91706 0.85117 0.86432 0.76261 0.87190 0.85797 0.87973 0.91293 0.76488 0.89092 0.88334 0.88000 0.81107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.45 71.98 0.68 -2.25 16 2 C 0.13 2.15 3.28 45.44 0.15 2.30 16 3 H 0.13 1.26 8.13 -2.39 -0.02 1.24 16 4 C -0.12 -2.07 6.31 31.65 0.20 -1.87 16 5 C 0.14 4.04 2.96 44.99 0.13 4.17 16 6 H 0.11 3.37 6.36 -2.39 -0.02 3.35 16 7 N -0.71 -27.60 5.21 -324.48 -1.69 -29.29 16 8 C 0.40 19.80 7.65 133.42 1.02 20.82 16 9 C -0.35 -17.01 9.25 22.73 0.21 -16.79 16 10 C -0.03 -1.64 10.15 22.39 0.23 -1.41 16 11 C -0.34 -18.23 9.83 22.87 0.22 -18.00 16 12 C 0.26 15.11 6.55 40.18 0.26 15.38 16 13 C -0.47 -26.63 9.14 23.46 0.21 -26.42 16 14 H 0.08 4.54 7.85 -2.91 -0.02 4.51 16 15 C 0.03 1.41 5.50 85.29 0.47 1.88 16 16 N -0.75 -40.45 11.46 21.84 0.25 -40.20 16 17 Si 0.99 38.99 29.56 68.60 2.03 41.02 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 N -0.56 -31.92 7.89 -186.58 -1.47 -33.39 16 22 C 0.49 16.56 7.61 87.90 0.67 17.23 16 23 O -0.56 -23.60 15.64 -3.08 -0.05 -23.65 16 24 N -0.52 -13.73 2.81 -606.13 -1.70 -15.43 16 25 C 0.00 -0.09 6.78 37.62 0.25 0.17 16 26 C 0.05 0.99 11.45 85.33 0.98 1.97 16 27 N -0.30 -7.41 12.56 -56.76 -0.71 -8.13 16 28 N -0.38 -9.09 4.04 -368.46 -1.49 -10.58 16 29 C 0.10 1.44 11.48 127.77 1.47 2.90 16 30 C 0.02 0.50 10.69 83.50 0.89 1.39 16 31 H 0.03 0.83 6.44 -2.38 -0.02 0.81 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.12 8.07 -2.39 -0.02 1.10 16 34 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.12 1.76 7.82 -2.38 -0.02 1.75 16 36 H 0.40 15.30 7.11 -92.71 -0.66 14.64 16 37 H 0.11 4.84 6.17 -2.91 -0.02 4.82 16 38 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16 39 H 0.10 5.10 8.06 -2.91 -0.02 5.07 16 40 H 0.28 13.41 8.29 -92.70 -0.77 12.64 16 41 H 0.22 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.17 5.49 6.51 -2.92 -0.02 5.47 16 Total: -1.00 -80.36 376.19 3.59 -76.77 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: 0.38 Total: 41.42 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 8.05 Total: 1.46 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -6.81 Total: -137.02 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -80.36 3.59 -76.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771658979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.694 kcal (2) G-P(sol) polarization free energy of solvation -80.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds