Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 C 1.46503 * 120.00249 * 60.00308 * 12 2 1 14 14 S 1.65603 * 119.99847 * 240.00000 * 12 2 1 15 15 O 1.42105 * 106.40178 * 203.54115 * 14 12 2 16 16 O 1.42100 * 106.40428 * 336.46445 * 14 12 2 17 17 N 1.65603 * 107.21853 * 90.00274 * 14 12 2 18 18 C 1.46504 * 119.99815 * 64.99851 * 17 14 12 19 19 C 1.50696 * 109.46955 * 165.00318 * 18 17 14 20 20 C 1.38128 * 120.03843 * 259.99967 * 19 18 17 21 21 C 1.38259 * 120.07646 * 179.97438 * 20 19 18 22 22 C 1.38307 * 120.14917 * 0.04888 * 21 20 19 23 23 C 1.38081 * 120.08034 * 359.97046 * 22 21 20 24 24 C 1.38894 * 120.03750 * 79.72372 * 19 18 17 25 25 N 1.39669 * 120.07682 * 0.02562 * 24 19 18 26 26 C 1.46892 * 111.00197 * 120.00031 * 25 24 19 27 27 C 1.46908 * 111.00038 * 243.95594 * 25 24 19 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46807 * 89.99603 * 13 12 2 33 33 H 1.08998 * 109.47196 * 209.99887 * 13 12 2 34 34 H 1.09000 * 109.46808 * 330.00267 * 13 12 2 35 35 H 0.96992 * 120.00147 * 244.99971 * 17 14 12 36 36 H 1.09004 * 109.47272 * 285.00087 * 18 17 14 37 37 H 1.09001 * 109.47328 * 45.00178 * 18 17 14 38 38 H 1.08000 * 119.96006 * 359.97265 * 20 19 18 39 39 H 1.08004 * 119.92820 * 180.02562 * 21 20 19 40 40 H 1.08006 * 119.95892 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.04310 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.47286 * 60.00059 * 26 25 24 43 43 H 1.09001 * 109.47682 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47170 * 300.00568 * 26 25 24 45 45 H 1.09003 * 109.46810 * 59.99727 * 27 25 24 46 46 H 1.09002 * 109.47035 * 179.97438 * 27 25 24 47 47 H 1.08999 * 109.46765 * 299.99702 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1830 1.5749 17 7 1.9607 0.8089 3.3999 18 6 1.1510 -0.0355 4.2817 19 6 0.6168 0.7945 5.4204 20 6 1.2340 0.7529 6.6554 21 6 0.7449 1.5144 7.7005 22 6 -0.3641 2.3195 7.5138 23 6 -0.9863 2.3657 6.2820 24 6 -0.4934 1.6067 5.2277 25 7 -1.1168 1.6553 3.9789 26 6 -2.5188 1.2273 4.0734 27 6 -1.0147 2.9979 3.3913 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1620 -3.4843 32 1 2.4158 -2.7377 0.9715 33 1 1.6239 -2.2854 2.5001 34 1 0.6905 -2.3003 0.9844 35 1 1.9054 1.7748 3.4683 36 1 0.3188 -0.4569 3.7177 37 1 1.7670 -0.8426 4.6782 38 1 2.0997 0.1246 6.8048 39 1 1.2297 1.4803 8.6651 40 1 -0.7438 2.9129 8.3325 41 1 -1.8519 2.9949 6.1367 42 1 -3.0545 1.8857 4.7572 43 1 -2.9807 1.2750 3.0872 44 1 -2.5620 0.2039 4.4460 45 1 0.0358 3.2616 3.2681 46 1 -1.5079 3.0075 2.4193 47 1 -1.4958 3.7204 4.0504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283032974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = -32.978395 kcal Electronic energy + Delta-G solvation = -29389.490586 eV Core-core repulsion = 25506.592143 eV Total energy + Delta-G solvation = -3882.898444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21744 -36.68095 -36.54236 -36.06947 -35.13202 -35.07711 -32.50637 -31.00499 -29.99589 -28.99514 -27.66165 -25.73157 -25.43700 -25.04604 -24.54689 -21.87148 -20.85139 -20.67532 -18.68858 -17.43180 -17.05777 -16.71471 -16.35541 -15.94349 -15.75834 -15.32493 -15.05555 -14.83719 -14.37378 -14.24621 -13.87545 -13.39278 -13.31590 -13.15482 -12.85701 -12.69605 -12.64964 -12.35747 -12.24374 -11.93616 -11.80037 -11.74745 -11.64289 -11.40887 -11.28285 -11.24738 -11.17216 -11.04580 -10.90589 -10.71392 -10.38898 -10.19648 -9.95234 -9.20011 -9.11000 -9.03938 -8.79352 -8.56072 -8.39398 -7.86423 -6.01139 -4.06916 1.02229 1.13479 1.44960 3.31917 3.38749 3.42877 3.45486 3.75165 3.76633 4.26301 4.45688 4.61956 4.70525 4.83516 4.98985 5.11686 5.17480 5.19693 5.25778 5.30415 5.37552 5.47151 5.51457 5.62985 5.63318 5.70928 5.77555 5.90186 5.97124 6.10946 6.22328 6.22528 6.30715 6.41858 6.46184 6.66785 6.72509 6.76610 6.90208 6.94605 7.13986 7.27257 7.31227 7.60131 7.73251 7.88056 8.13162 8.36372 8.95281 9.58355 11.04314 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.003736 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.823413 B = 7492.336318 C = 8467.008137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.271 3.729 3 H 0.057 0.943 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.988 5.988 13 C 0.111 3.889 14 S 2.781 3.219 15 O -1.000 7.000 16 O -0.977 6.977 17 N -1.122 6.122 18 C 0.174 3.826 19 C -0.072 4.072 20 C -0.098 4.098 21 C -0.126 4.126 22 C -0.109 4.109 23 C -0.152 4.152 24 C 0.105 3.895 25 N -0.503 5.503 26 C 0.029 3.971 27 C 0.030 3.970 28 H 0.030 0.970 29 H 0.018 0.982 30 H 0.089 0.911 31 H 0.262 0.738 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.026 0.974 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 2.055 18.985 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.168 3.832 3 H 0.075 0.925 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.830 5.830 13 C -0.036 4.036 14 S 2.789 3.211 15 O -0.983 6.983 16 O -0.961 6.961 17 N -0.880 5.880 18 C 0.048 3.952 19 C -0.074 4.074 20 C -0.118 4.118 21 C -0.144 4.144 22 C -0.128 4.128 23 C -0.173 4.173 24 C 0.010 3.990 25 N -0.224 5.224 26 C -0.117 4.117 27 C -0.116 4.116 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.242 0.758 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.045 0.955 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.340 1.677 18.465 19.595 hybrid contribution -0.721 0.584 -0.311 0.978 sum -7.060 2.261 18.153 19.609 Atomic orbital electron populations 1.22076 0.98131 0.99530 1.00786 1.18683 0.91380 0.92836 0.80315 0.92502 1.21369 1.31354 1.12868 0.90173 0.92069 1.24890 0.95063 0.95018 0.98907 1.69866 1.36761 1.22715 1.23581 0.86526 0.79282 0.79284 0.82477 1.20738 1.21213 1.19882 1.57640 1.69917 1.19679 1.35801 1.21137 1.01619 0.82239 0.98609 1.01876 0.73653 0.73114 0.72417 1.93526 1.69298 1.60848 1.74624 1.93605 1.74524 1.56026 1.71930 1.56109 1.62007 1.17155 1.52714 1.19906 0.94806 0.91444 0.89037 1.19843 0.94885 0.97807 0.94891 1.21144 0.99362 0.99031 0.92231 1.21151 0.96911 0.97302 0.99051 1.21019 0.96055 0.98890 0.96851 1.21620 1.00968 1.00646 0.94021 1.18757 0.94870 0.96131 0.89227 1.59549 1.15759 1.27054 1.20026 1.22444 0.86780 1.00562 1.01952 1.22457 1.02892 0.86784 0.99495 0.95109 0.96269 0.89272 0.92855 0.93455 0.93484 0.91012 0.75802 0.90117 0.90692 0.85318 0.85949 0.86261 0.86368 0.95523 0.90533 0.91221 0.91030 0.90261 0.95509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.95 37.16 0.33 -2.94 16 2 C 0.27 6.62 2.62 -69.08 -0.18 6.44 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -14.05 8.37 -34.44 -0.29 -14.33 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.80 11.32 55.43 0.63 -24.18 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.99 -20.55 3.12 -115.85 -0.36 -20.91 16 13 C 0.11 1.98 9.53 59.85 0.57 2.55 16 14 S 2.78 55.33 6.10 -107.50 -0.66 54.67 16 15 O -1.00 -20.98 16.68 -57.17 -0.95 -21.93 16 16 O -0.98 -23.18 16.70 -57.17 -0.95 -24.13 16 17 N -1.12 -17.29 6.05 -11.65 -0.07 -17.36 16 18 C 0.17 2.31 6.00 -5.19 -0.03 2.28 16 19 C -0.07 -0.85 5.29 -104.42 -0.55 -1.40 16 20 C -0.10 -1.02 9.66 -39.61 -0.38 -1.41 16 21 C -0.13 -1.13 10.04 -39.55 -0.40 -1.53 16 22 C -0.11 -0.97 10.04 -39.61 -0.40 -1.36 16 23 C -0.15 -1.50 8.57 -39.38 -0.34 -1.84 16 24 C 0.10 1.19 4.71 -83.78 -0.39 0.79 16 25 N -0.50 -5.82 4.14 -186.85 -0.77 -6.59 16 26 C 0.03 0.29 9.34 60.06 0.56 0.85 16 27 C 0.03 0.34 9.39 60.07 0.56 0.90 16 28 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 34 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 35 H 0.41 5.93 8.63 -34.47 -0.30 5.63 16 36 H 0.08 1.09 7.81 -51.93 -0.41 0.68 16 37 H 0.07 0.95 7.61 -51.93 -0.40 0.56 16 38 H 0.13 1.19 8.04 -52.49 -0.42 0.77 16 39 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 41 H 0.12 1.03 7.02 -52.49 -0.37 0.66 16 42 H 0.03 0.23 7.11 -51.93 -0.37 -0.14 16 43 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 46 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 47 H 0.03 0.25 7.36 -51.93 -0.38 -0.13 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -32.51 391.09 -10.61 -43.12 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.31 Total: 4.50 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.03 Total: -9.37 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -0.58 Total: -69.04 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.91 Total: -46.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 55.33 SS G_CDS: -0.66 Total: 54.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.51 -10.61 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283032974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.145 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds