Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46922 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47405 * 119.99851 * 8 6 4 11 11 H 1.48500 * 109.47017 * 239.99933 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 S 1.65597 * 119.99910 * 119.72126 * 12 2 1 15 15 O 1.42101 * 106.40154 * 23.82013 * 14 12 2 16 16 O 1.42106 * 106.40098 * 156.73670 * 14 12 2 17 17 N 1.65596 * 107.22389 * 270.27980 * 14 12 2 18 18 C 1.46498 * 119.99862 * 64.99463 * 17 14 12 19 19 C 1.50705 * 109.47089 * 165.00621 * 18 17 14 20 20 C 1.38310 * 119.95883 * 269.72652 * 19 18 17 21 21 C 1.38263 * 120.14860 * 179.72329 * 20 19 18 22 22 C 1.38133 * 120.07056 * 0.55139 * 21 20 19 23 23 C 1.38885 * 119.92592 * 359.72324 * 22 21 20 24 24 N 1.39670 * 120.07422 * 179.97438 * 23 22 21 25 25 C 1.46504 * 120.00243 * 180.02562 * 24 23 22 26 26 C 1.46504 * 120.00096 * 0.02741 * 24 23 22 27 27 C 1.38076 * 119.96096 * 90.00199 * 19 18 17 28 28 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 29 29 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 31 31 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 33 33 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 34 34 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 35 35 H 0.97000 * 119.99918 * 245.00321 * 17 14 12 36 36 H 1.09005 * 109.47365 * 285.00417 * 18 17 14 37 37 H 1.09000 * 109.47259 * 45.00301 * 18 17 14 38 38 H 1.07999 * 119.92476 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.96666 * 180.27536 * 21 20 19 40 40 H 1.08002 * 120.03564 * 179.74991 * 22 21 20 41 41 H 1.08997 * 109.47127 * 89.99990 * 25 24 23 42 42 H 1.09003 * 109.47261 * 210.00264 * 25 24 23 43 43 H 1.09000 * 109.46924 * 329.99753 * 25 24 23 44 44 H 1.08995 * 109.47318 * 59.99592 * 26 24 23 45 45 H 1.09001 * 109.47085 * 180.02562 * 26 24 23 46 46 H 1.08997 * 109.46885 * 299.99748 * 26 24 23 47 47 H 1.07998 * 120.04526 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1473 -0.1858 4.8161 11 1 1.1677 -1.5865 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 16 2.9647 0.1161 -2.2897 15 8 3.5762 1.1845 -1.5799 16 8 3.7037 -0.8757 -2.9894 17 7 1.9494 0.8114 -3.3978 18 6 1.0189 1.8630 -2.9800 19 6 0.4862 2.5750 -4.1967 20 6 1.1468 3.6845 -4.6922 21 6 0.6647 4.3373 -5.8116 22 6 -0.4853 3.8896 -6.4323 23 6 -1.1542 2.7791 -5.9340 24 7 -2.3175 2.3242 -6.5588 25 6 -3.0222 1.1529 -6.0315 26 6 -2.8332 3.0181 -7.7416 27 6 -0.6638 2.1222 -4.8122 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7089 1.1614 3.4844 32 1 2.4182 -2.7377 -0.9758 33 1 0.6926 -2.3015 -0.9803 34 1 1.6190 -2.2841 -2.5002 35 1 1.9707 0.5224 -4.3235 36 1 0.1911 1.4175 -2.4282 37 1 1.5397 2.5760 -2.3407 38 1 2.0434 4.0395 -4.2059 39 1 1.1853 5.2007 -6.1986 40 1 -0.8636 4.4024 -7.3043 41 1 -3.7604 1.4735 -5.2965 42 1 -3.5240 0.6329 -6.8476 43 1 -2.3063 0.4809 -5.5583 44 1 -2.0833 2.9949 -8.5322 45 1 -3.7409 2.5229 -8.0864 46 1 -3.0593 4.0532 -7.4856 47 1 -1.1814 1.2581 -4.4225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283062719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = -35.499230 kcal Electronic energy + Delta-G solvation = -28452.713677 eV Core-core repulsion = 24569.705922 eV Total energy + Delta-G solvation = -3883.007755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.80002 -36.89799 -36.55948 -36.13626 -35.16749 -34.71776 -32.55848 -31.09096 -30.10519 -29.08952 -28.50639 -25.57047 -25.38464 -25.09250 -24.94649 -21.76203 -20.76431 -20.51411 -18.76467 -17.63199 -17.14202 -16.73984 -16.19521 -15.98914 -15.79633 -15.53752 -15.27759 -14.88604 -14.48111 -14.20792 -13.99913 -13.53586 -13.36221 -13.12611 -12.92490 -12.81985 -12.75634 -12.58605 -12.33202 -12.19401 -11.98263 -11.69615 -11.67331 -11.39903 -11.34803 -11.29444 -11.19131 -10.96356 -10.80175 -10.77197 -10.41363 -10.26481 -10.00539 -9.92378 -9.24234 -9.18773 -8.86333 -8.44275 -7.94955 -7.42142 -6.06119 -4.12053 1.11032 1.47133 1.59558 2.92465 3.28906 3.37257 3.41547 3.55395 3.89911 4.20366 4.41744 4.63749 4.71176 4.82012 4.99008 5.04008 5.07376 5.12994 5.25465 5.31580 5.36287 5.40385 5.43886 5.48443 5.53719 5.60453 5.68964 5.86169 5.95138 6.09388 6.17474 6.20248 6.41075 6.49813 6.64037 6.70200 6.77160 6.79609 6.83273 7.00802 7.06110 7.22275 7.35140 7.51721 7.65256 7.80605 8.05437 8.29244 8.90508 9.53741 10.99626 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.003046 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.392381 B = 9189.711041 C = 9680.881275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.266 3.734 3 H 0.060 0.940 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.991 5.991 13 C 0.111 3.889 14 S 2.779 3.221 15 O -0.974 6.974 16 O -0.997 6.997 17 N -1.129 6.129 18 C 0.157 3.843 19 C -0.044 4.044 20 C -0.158 4.158 21 C -0.076 4.076 22 C -0.193 4.193 23 C 0.207 3.793 24 N -0.641 5.641 25 C 0.092 3.908 26 C 0.099 3.901 27 C -0.178 4.178 28 H 0.012 0.988 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.262 0.738 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.409 0.591 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.052 0.948 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 3.732 -19.227 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.077 0.923 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.834 5.834 13 C -0.035 4.035 14 S 2.788 3.212 15 O -0.957 6.957 16 O -0.981 6.981 17 N -0.887 5.887 18 C 0.031 3.969 19 C -0.046 4.046 20 C -0.178 4.178 21 C -0.095 4.095 22 C -0.216 4.216 23 C 0.107 3.893 24 N -0.354 5.354 25 C -0.051 4.051 26 C -0.045 4.045 27 C -0.201 4.201 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.242 0.758 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.235 3.897 -18.952 21.028 hybrid contribution -0.278 -0.595 0.439 0.790 sum -8.514 3.301 -18.514 20.643 Atomic orbital electron populations 1.22185 0.98375 0.99778 1.00623 1.18750 0.91203 0.93062 0.80676 0.92267 1.21370 1.31416 1.12948 0.90017 0.91917 1.24902 0.95002 0.95016 0.98985 1.69860 1.36681 1.22708 1.23647 0.86453 0.78590 0.79686 0.82749 1.19760 1.20912 1.21046 1.57704 1.70216 1.19821 1.35622 1.21120 1.01587 0.82048 0.98750 1.01958 0.73567 0.73182 0.72475 1.93594 1.73729 1.55887 1.72492 1.93546 1.69716 1.60219 1.74647 1.56216 1.57150 1.51358 1.23997 1.20240 0.93240 0.89466 0.93974 1.19633 0.94101 0.95080 0.95800 1.20947 1.01421 0.97281 0.98196 1.20870 0.95016 0.98702 0.94897 1.20619 0.98754 0.98948 1.03298 1.17767 0.86416 0.93124 0.92015 1.46280 1.25976 1.32052 1.31077 1.21671 0.96799 0.87472 0.99127 1.21552 0.98789 0.97060 0.87066 1.20622 0.99099 1.02711 0.97684 0.96891 0.94744 0.88819 0.92780 0.93342 0.91038 0.93354 0.75846 0.90354 0.89377 0.85928 0.86143 0.86440 0.93344 0.91728 0.91113 0.92997 0.91066 0.92950 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.95 37.16 0.33 -2.95 16 2 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.86 8.37 -34.44 -0.29 -14.15 16 5 H 0.06 1.69 7.65 -52.48 -0.40 1.29 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.99 -20.36 3.12 -115.85 -0.36 -20.72 16 13 C 0.11 1.98 9.53 59.85 0.57 2.55 16 14 S 2.78 54.70 6.09 -107.50 -0.65 54.05 16 15 O -0.97 -22.72 16.18 -57.17 -0.92 -23.65 16 16 O -1.00 -20.96 17.21 -57.17 -0.98 -21.94 16 17 N -1.13 -17.16 6.05 -11.65 -0.07 -17.23 16 18 C 0.16 2.31 6.37 -5.19 -0.03 2.28 16 19 C -0.04 -0.58 5.27 -104.65 -0.55 -1.13 16 20 C -0.16 -1.97 9.70 -39.55 -0.38 -2.35 16 21 C -0.08 -0.83 10.04 -39.61 -0.40 -1.22 16 22 C -0.19 -2.05 9.31 -39.38 -0.37 -2.42 16 23 C 0.21 2.34 6.55 -83.79 -0.55 1.79 16 24 N -0.64 -5.94 3.41 -187.55 -0.64 -6.58 16 25 C 0.09 0.70 10.16 59.85 0.61 1.31 16 26 C 0.10 0.65 9.40 59.85 0.56 1.21 16 27 C -0.18 -2.16 8.86 -39.38 -0.35 -2.51 16 28 H 0.01 0.23 6.14 -51.93 -0.32 -0.09 16 29 H 0.03 0.71 6.66 -51.92 -0.35 0.37 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 34 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 35 H 0.41 5.36 8.64 -34.47 -0.30 5.06 16 36 H 0.08 1.15 6.08 -51.93 -0.32 0.84 16 37 H 0.09 1.40 7.69 -51.93 -0.40 1.00 16 38 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.02 6.73 -52.49 -0.35 0.66 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 43 H 0.07 0.56 6.20 -51.93 -0.32 0.24 16 44 H 0.05 0.32 7.95 -51.93 -0.41 -0.09 16 45 H 0.07 0.34 7.79 -51.93 -0.40 -0.06 16 46 H 0.05 0.33 7.95 -51.93 -0.41 -0.08 16 47 H 0.13 1.41 6.14 -52.49 -0.32 1.08 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -32.82 386.13 -10.29 -43.11 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.96 Total: 4.70 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.12 Total: -9.79 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -0.44 Total: -68.40 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.91 Total: -45.59 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 54.70 SS G_CDS: -0.65 Total: 54.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.82 -10.29 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283062719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.612 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds