Wall clock time and date at job start Sat Apr 11 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46922 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47405 * 119.99851 * 8 6 4 11 11 H 1.48500 * 109.47017 * 239.99933 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 S 1.65597 * 119.99910 * 119.72126 * 12 2 1 15 15 O 1.42101 * 106.40154 * 23.82013 * 14 12 2 16 16 O 1.42106 * 106.40098 * 156.73670 * 14 12 2 17 17 N 1.65596 * 107.22389 * 270.27980 * 14 12 2 18 18 C 1.46498 * 119.99862 * 64.99463 * 17 14 12 19 19 C 1.50705 * 109.47089 * 165.00621 * 18 17 14 20 20 C 1.38310 * 119.95883 * 269.72652 * 19 18 17 21 21 C 1.38263 * 120.14860 * 179.72329 * 20 19 18 22 22 C 1.38133 * 120.07056 * 0.55139 * 21 20 19 23 23 C 1.38885 * 119.92592 * 359.72324 * 22 21 20 24 24 N 1.39670 * 120.07422 * 179.97438 * 23 22 21 25 25 C 1.46504 * 120.00243 * 180.02562 * 24 23 22 26 26 C 1.46504 * 120.00096 * 0.02741 * 24 23 22 27 27 C 1.38076 * 119.96096 * 90.00199 * 19 18 17 28 28 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 29 29 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 31 31 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 33 33 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 34 34 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 35 35 H 0.97000 * 119.99918 * 245.00321 * 17 14 12 36 36 H 1.09005 * 109.47365 * 285.00417 * 18 17 14 37 37 H 1.09000 * 109.47259 * 45.00301 * 18 17 14 38 38 H 1.07999 * 119.92476 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.96666 * 180.27536 * 21 20 19 40 40 H 1.08002 * 120.03564 * 179.74991 * 22 21 20 41 41 H 1.08997 * 109.47127 * 89.99990 * 25 24 23 42 42 H 1.09003 * 109.47261 * 210.00264 * 25 24 23 43 43 H 1.09000 * 109.46924 * 329.99753 * 25 24 23 44 44 H 1.08995 * 109.47318 * 59.99592 * 26 24 23 45 45 H 1.09001 * 109.47085 * 180.02562 * 26 24 23 46 46 H 1.08997 * 109.46885 * 299.99748 * 26 24 23 47 47 H 1.07998 * 120.04526 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1473 -0.1858 4.8161 11 1 1.1677 -1.5865 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 16 2.9647 0.1161 -2.2897 15 8 3.5762 1.1845 -1.5799 16 8 3.7037 -0.8757 -2.9894 17 7 1.9494 0.8114 -3.3978 18 6 1.0189 1.8630 -2.9800 19 6 0.4862 2.5750 -4.1967 20 6 1.1468 3.6845 -4.6922 21 6 0.6647 4.3373 -5.8116 22 6 -0.4853 3.8896 -6.4323 23 6 -1.1542 2.7791 -5.9340 24 7 -2.3175 2.3242 -6.5588 25 6 -3.0222 1.1529 -6.0315 26 6 -2.8332 3.0181 -7.7416 27 6 -0.6638 2.1222 -4.8122 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7089 1.1614 3.4844 32 1 2.4182 -2.7377 -0.9758 33 1 0.6926 -2.3015 -0.9803 34 1 1.6190 -2.2841 -2.5002 35 1 1.9707 0.5224 -4.3235 36 1 0.1911 1.4175 -2.4282 37 1 1.5397 2.5760 -2.3407 38 1 2.0434 4.0395 -4.2059 39 1 1.1853 5.2007 -6.1986 40 1 -0.8636 4.4024 -7.3043 41 1 -3.7604 1.4735 -5.2965 42 1 -3.5240 0.6329 -6.8476 43 1 -2.3063 0.4809 -5.5583 44 1 -2.0833 2.9949 -8.5322 45 1 -3.7409 2.5229 -8.0864 46 1 -3.0593 4.0532 -7.4856 47 1 -1.1814 1.2581 -4.4225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283062719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:43 Heat of formation + Delta-G solvation = -57.847229 kcal Electronic energy + Delta-G solvation = -28453.682759 eV Core-core repulsion = 24569.705922 eV Total energy + Delta-G solvation = -3883.976837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64538 -38.37324 -37.88422 -37.61560 -36.88183 -35.81946 -34.50758 -32.04046 -30.93239 -30.88785 -29.13551 -27.27710 -26.99851 -26.41479 -25.64697 -22.64635 -22.55067 -21.39284 -20.29467 -18.96011 -18.58172 -18.28352 -17.93001 -17.21106 -16.83665 -16.64183 -16.38653 -15.93787 -15.83241 -15.40635 -15.10132 -14.89529 -14.79512 -14.55816 -14.23559 -13.88513 -13.72336 -13.49684 -13.39599 -13.35544 -13.21719 -13.11715 -13.05817 -12.98199 -12.97094 -12.77677 -12.66091 -12.57349 -12.24610 -12.17944 -12.12296 -11.87779 -11.70898 -11.10226 -10.71058 -10.55821 -10.44388 -9.79757 -9.62848 -8.17686 -8.10038 -6.22823 -0.37426 0.47859 0.69828 1.41692 1.45031 1.55173 2.08318 2.28188 2.44577 2.63247 2.98919 3.18359 3.42690 3.71504 3.96885 4.09109 4.14680 4.27204 4.36179 4.43067 4.47098 4.51732 4.57056 4.70237 4.71058 4.77872 4.82266 4.87283 4.92075 4.93624 4.95473 5.05829 5.09738 5.13453 5.16824 5.21772 5.36447 5.61885 5.64228 5.73285 5.79433 5.90258 5.94626 6.09823 6.19786 6.33547 6.39078 6.57785 6.84621 7.45890 8.94121 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.003046 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.392381 B = 9189.711041 C = 9680.881275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.272 3.728 3 H 0.027 0.973 4 C -0.537 4.537 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.996 5.996 13 C 0.104 3.896 14 S 2.796 3.204 15 O -1.015 7.015 16 O -1.010 7.010 17 N -1.109 6.109 18 C 0.158 3.842 19 C -0.054 4.054 20 C -0.178 4.178 21 C -0.074 4.074 22 C -0.194 4.194 23 C 0.202 3.798 24 N -0.645 5.645 25 C 0.087 3.913 26 C 0.093 3.907 27 C -0.188 4.188 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.422 0.578 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 3.350 -21.104 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.168 3.832 3 H 0.045 0.955 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.838 5.838 13 C -0.041 4.041 14 S 2.805 3.195 15 O -0.998 6.998 16 O -0.994 6.994 17 N -0.871 5.871 18 C 0.033 3.967 19 C -0.057 4.057 20 C -0.198 4.198 21 C -0.093 4.093 22 C -0.217 4.217 23 C 0.099 3.901 24 N -0.357 5.357 25 C -0.055 4.055 26 C -0.050 4.050 27 C -0.211 4.211 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.258 0.742 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.074 0.926 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.696 3.485 -20.858 23.264 hybrid contribution 0.120 -0.442 0.897 1.007 sum -9.576 3.043 -19.962 22.348 Atomic orbital electron populations 1.21977 0.96696 1.00336 1.00698 1.18436 0.92342 0.91389 0.81079 0.95482 1.21677 1.31530 1.12951 0.91546 0.92745 1.25596 0.95273 0.95722 1.01512 1.69970 1.37300 1.23570 1.24238 0.85585 0.78269 0.78576 0.79656 1.19625 1.21074 1.19963 1.57578 1.70168 1.21043 1.35056 1.21330 1.01692 0.80241 1.00844 1.01233 0.73482 0.72439 0.72315 1.93542 1.75132 1.57317 1.73815 1.93518 1.70501 1.60658 1.74713 1.55731 1.56537 1.51003 1.23821 1.20225 0.92634 0.88944 0.94911 1.19471 0.95007 0.95655 0.95549 1.21044 1.01767 0.97768 0.99268 1.21126 0.95106 0.99003 0.94058 1.20906 0.98395 0.98678 1.03730 1.17947 0.87161 0.93172 0.91795 1.46549 1.25283 1.32375 1.31444 1.21791 0.96642 0.87106 1.00011 1.21738 0.99734 0.97295 0.86196 1.20676 0.98936 1.03222 0.98275 0.94097 0.93818 0.91438 0.92657 0.94128 0.90188 0.90278 0.74244 0.90293 0.91173 0.86402 0.83888 0.84297 0.93295 0.89592 0.91676 0.92460 0.89092 0.92631 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 8.95 71.98 0.64 -5.35 16 2 C 0.27 13.21 2.62 44.25 0.12 13.32 16 3 H 0.03 1.50 6.91 -2.39 -0.02 1.48 16 4 C -0.54 -29.16 8.37 25.60 0.21 -28.94 16 5 H 0.05 2.97 7.65 -2.91 -0.02 2.94 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -50.88 11.32 21.45 0.24 -50.64 16 8 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 N -1.00 -40.91 3.12 -520.44 -1.62 -42.53 16 13 C 0.10 3.59 9.53 127.77 1.22 4.81 16 14 S 2.80 110.76 6.09 -56.49 -0.34 110.41 16 15 O -1.01 -48.89 16.18 -128.00 -2.07 -50.96 16 16 O -1.01 -41.93 17.21 -128.00 -2.20 -44.13 16 17 N -1.11 -33.37 6.05 -190.78 -1.15 -34.53 16 18 C 0.16 4.72 6.37 85.64 0.55 5.26 16 19 C -0.05 -1.41 5.27 -19.88 -0.10 -1.51 16 20 C -0.18 -4.36 9.70 22.29 0.22 -4.15 16 21 C -0.07 -1.49 10.04 22.25 0.22 -1.27 16 22 C -0.19 -3.68 9.31 22.40 0.21 -3.48 16 23 C 0.20 4.17 6.55 38.22 0.25 4.42 16 24 N -0.64 -10.37 3.41 -747.27 -2.55 -12.92 16 25 C 0.09 1.13 10.16 127.77 1.30 2.43 16 26 C 0.09 0.95 9.40 127.77 1.20 2.15 16 27 C -0.19 -4.35 8.86 22.40 0.20 -4.15 16 28 H 0.04 1.50 6.14 -2.39 -0.01 1.49 16 29 H 0.04 1.77 6.66 -2.38 -0.02 1.76 16 30 H 0.07 3.33 6.07 -2.39 -0.01 3.31 16 31 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 2.60 6.43 -2.39 -0.02 2.59 16 34 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 35 H 0.42 10.64 8.64 -96.75 -0.84 9.80 16 36 H 0.08 2.32 6.08 -2.38 -0.01 2.30 16 37 H 0.07 2.34 7.69 -2.39 -0.02 2.32 16 38 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.14 1.98 6.73 -2.91 -0.02 1.96 16 41 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.09 0.74 7.92 -2.39 -0.02 0.72 16 43 H 0.06 0.92 6.20 -2.39 -0.01 0.90 16 44 H 0.06 0.54 7.95 -2.39 -0.02 0.52 16 45 H 0.09 0.57 7.79 -2.39 -0.02 0.55 16 46 H 0.06 0.55 7.95 -2.39 -0.02 0.53 16 47 H 0.13 2.77 6.14 -2.91 -0.02 2.75 16 Total: -1.00 -70.62 386.13 -0.85 -71.47 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.15 Total: 23.29 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 6.68 Total: -14.98 kcal Atomic # 7 Polarization: -135.53 SS G_CDS: -5.08 Total: -140.61 kcal Atomic # 8 Polarization: -90.82 SS G_CDS: -4.27 Total: -95.09 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 110.76 SS G_CDS: -0.34 Total: 110.41 kcal Total: -70.62 -0.85 -71.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283062719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.618 kcal (2) G-P(sol) polarization free energy of solvation -70.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds