Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99654 * 2 1 4 4 N 1.46502 * 109.46959 * 124.48044 * 3 2 1 5 5 C 1.46498 * 120.00469 * 271.23648 * 4 3 2 6 6 C 1.50709 * 109.46926 * 272.82538 * 5 4 3 7 7 H 1.07995 * 119.99679 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99857 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00008 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99890 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47257 * 120.00444 * 10 8 6 13 13 H 1.48507 * 109.47063 * 239.99919 * 10 8 6 14 14 C 1.34780 * 119.99635 * 91.23509 * 4 3 2 15 15 O 1.21286 * 120.00175 * 6.57553 * 14 4 3 16 16 C 1.50699 * 119.99816 * 186.57346 * 14 4 3 17 17 H 1.08993 * 109.47283 * 35.14302 * 16 14 4 18 18 C 1.53006 * 109.47246 * 275.13882 * 16 14 4 19 19 N 1.46498 * 109.46975 * 155.14527 * 16 14 4 20 20 N 1.28735 * 125.34417 * 59.97368 * 19 16 14 21 21 N 1.28987 * 108.94404 * 179.74761 * 20 19 16 22 22 C 1.34047 * 107.26895 * 0.43093 * 21 20 19 23 23 C 1.48464 * 126.67786 * 179.83220 * 22 21 20 24 24 C 1.39302 * 120.11436 * 359.69612 * 23 22 21 25 25 C 1.38029 * 119.88288 * 179.97438 * 24 23 22 26 26 C 1.38318 * 120.11541 * 359.97001 * 25 24 23 27 27 C 1.38316 * 120.23581 * 0.28182 * 26 25 24 28 28 C 1.38030 * 120.11555 * 359.48551 * 27 26 25 29 29 N 1.28875 * 125.34423 * 240.00032 * 19 16 14 30 30 H 1.08003 * 119.99983 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00494 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.00151 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.47118 * 4.48744 * 3 2 1 34 34 H 1.08992 * 109.47163 * 244.48338 * 3 2 1 35 35 H 1.08995 * 109.46977 * 32.82016 * 5 4 3 36 36 H 1.08993 * 109.47264 * 152.82728 * 5 4 3 37 37 H 0.97002 * 120.00151 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.47257 * 293.79050 * 18 16 14 39 39 H 1.09006 * 109.46636 * 53.79000 * 18 16 14 40 40 H 1.08999 * 109.46804 * 173.78679 * 18 16 14 41 41 H 1.08004 * 120.05870 * 359.97438 * 24 23 22 42 42 H 1.07997 * 119.94241 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.87802 * 180.02562 * 26 25 24 44 44 H 1.08001 * 119.93976 * 179.74033 * 27 26 25 45 45 H 1.08005 * 120.05679 * 180.24969 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9848 1.3371 1.1386 5 6 2.5316 1.8509 2.4335 6 6 2.7279 3.3445 2.4779 7 1 3.1485 3.8593 1.6269 8 6 2.3704 4.0535 3.6050 9 7 1.8586 3.4264 4.6416 10 14 2.6130 5.9049 3.6598 11 1 3.2009 6.3652 2.3762 12 1 1.3021 6.5699 3.8701 13 1 3.5285 6.2513 4.7766 14 6 4.2494 0.8938 0.9947 15 8 4.6611 0.5805 -0.1023 16 6 5.1519 0.7874 2.1969 17 1 4.5652 0.4918 3.0666 18 6 5.8098 2.1431 2.4623 19 7 6.1879 -0.2166 1.9424 20 7 7.0512 -0.1706 0.9885 21 7 7.8129 -1.2089 1.0626 22 6 7.3938 -1.9361 2.1078 23 6 7.9664 -3.2218 2.5803 24 6 9.0479 -3.7924 1.9130 25 6 9.5768 -4.9876 2.3567 26 6 9.0353 -5.6184 3.4622 27 6 7.9582 -5.0587 4.1253 28 6 7.4247 -3.8614 3.6928 29 7 6.3778 -1.2847 2.6380 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3577 2.1321 0.0804 34 1 2.6284 1.3985 -0.9274 35 1 1.4749 1.6192 2.5666 36 1 3.1091 1.3847 3.2317 37 1 1.6068 3.9253 5.4344 38 1 6.4829 2.3874 1.6405 39 1 5.0403 2.9109 2.5422 40 1 6.3748 2.0966 3.3932 41 1 9.4717 -3.3005 1.0500 42 1 10.4150 -5.4311 1.8398 43 1 9.4524 -6.5532 3.8063 44 1 7.5364 -5.5574 4.9855 45 1 6.5861 -3.4232 4.2138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292459912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = 145.182439 kcal Electronic energy + Delta-G solvation = -29110.401282 eV Core-core repulsion = 25132.077272 eV Total energy + Delta-G solvation = -3978.324010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.03649 -39.70873 -39.14723 -35.93376 -35.23471 -33.67271 -33.32775 -32.47136 -31.82815 -31.07096 -29.78578 -27.74792 -26.28459 -25.08618 -24.35502 -23.37981 -22.89423 -21.85265 -21.47979 -19.95064 -18.96670 -17.52994 -17.17034 -17.05110 -16.60818 -16.31561 -15.77556 -15.42831 -14.93712 -14.90697 -14.62648 -14.25764 -14.05328 -13.59307 -13.52342 -13.34661 -13.11735 -12.84876 -12.61489 -12.36487 -12.20263 -12.02084 -11.66537 -11.61632 -11.57409 -11.34939 -11.21538 -11.14790 -11.01681 -10.95577 -10.77452 -10.68077 -10.61370 -10.37030 -9.94097 -9.49114 -9.11193 -9.10707 -8.75830 -8.65764 -8.05298 -6.38696 -4.47749 0.75813 1.24387 1.57026 1.95164 2.44936 2.56188 2.91679 3.10029 3.20615 3.23969 3.64852 3.74423 3.84389 4.15724 4.40487 4.74558 4.79550 4.81098 4.94054 4.95055 5.02122 5.04751 5.23353 5.26599 5.40957 5.46590 5.51992 5.75062 5.78475 5.82445 5.89023 5.90588 6.01300 6.06029 6.19260 6.25274 6.31583 6.38718 6.40199 6.44886 6.56544 6.75687 6.79839 6.84878 6.96205 7.23925 7.54950 7.79158 7.94767 8.45605 8.61981 8.64618 9.20875 10.67633 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.002890 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.044307 B = 9687.157155 C =10518.557438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.144 3.856 4 N -0.581 5.581 5 C 0.230 3.770 6 C -0.546 4.546 7 H 0.067 0.933 8 C 0.070 3.930 9 N -0.883 5.883 10 Si 0.895 3.105 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.510 3.490 15 O -0.541 6.541 16 C 0.143 3.857 17 H 0.148 0.852 18 C -0.167 4.167 19 N -0.117 5.117 20 N -0.021 5.021 21 N -0.289 5.289 22 C 0.194 3.806 23 C -0.002 4.002 24 C -0.081 4.081 25 C -0.124 4.124 26 C -0.109 4.109 27 C -0.123 4.123 28 C -0.084 4.084 29 N -0.302 5.302 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.268 0.732 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.243 -12.169 -0.629 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.181 4.181 3 C 0.022 3.978 4 N -0.311 5.311 5 C 0.110 3.890 6 C -0.585 4.585 7 H 0.085 0.915 8 C -0.135 4.135 9 N -0.520 5.520 10 Si 0.722 3.278 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.206 1.206 14 C 0.294 3.706 15 O -0.419 6.419 16 C 0.040 3.960 17 H 0.165 0.835 18 C -0.225 4.225 19 N -0.029 5.029 20 N -0.013 5.013 21 N -0.160 5.160 22 C -0.086 4.086 23 C -0.005 4.005 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.128 4.128 27 C -0.141 4.141 28 C -0.104 4.104 29 N -0.152 5.152 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.150 0.850 40 H 0.090 0.910 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.226 -11.649 -1.393 13.778 hybrid contribution -0.145 0.628 0.634 0.904 sum 7.081 -11.021 -0.759 13.122 Atomic orbital electron populations 1.23799 0.95682 1.01759 1.00965 1.23330 0.96190 0.99044 0.99505 1.20488 0.92206 0.95094 0.90015 1.48122 1.09001 1.59816 1.14147 1.19645 0.97086 0.94538 0.77690 1.21458 1.43807 0.91791 1.01403 0.91467 1.24947 0.94333 0.98979 0.95231 1.69919 1.40939 1.36340 1.04848 0.86474 0.78226 0.84640 0.78458 1.19411 1.20696 1.20618 1.19878 0.82911 0.78810 0.88990 1.90740 1.74246 1.50797 1.26068 1.21979 0.85724 0.87821 1.00488 0.83496 1.22377 1.03732 0.93576 1.02815 1.49961 1.22496 1.14683 1.15795 1.79041 0.97716 1.16172 1.08418 1.76029 1.21203 1.01117 1.17666 1.23552 0.93578 0.97931 0.93515 1.17299 0.96828 0.89600 0.96803 1.21223 0.94392 0.95198 0.99310 1.21084 1.00504 0.95342 0.97230 1.21293 0.96141 0.99779 0.95561 1.21089 0.96939 0.95631 1.00460 1.21252 0.99417 0.94829 0.94921 1.74834 1.19458 0.98539 1.22328 0.88763 0.88211 0.88026 0.89205 0.89639 0.93810 0.94376 0.92235 0.90815 0.85021 0.90991 0.84703 0.85415 0.85785 0.85416 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 14.32 29.01 0.42 -2.10 16 2 C -0.16 -2.54 9.85 -36.02 -0.35 -2.90 16 3 C 0.14 2.51 5.92 -5.19 -0.03 2.48 16 4 N -0.58 -11.24 2.44 -176.43 -0.43 -11.67 16 5 C 0.23 4.85 4.88 -5.19 -0.03 4.83 16 6 C -0.55 -12.52 7.20 -34.44 -0.25 -12.76 16 7 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.88 -22.20 13.29 55.43 0.74 -21.46 16 10 Si 0.90 18.84 29.54 -169.99 -5.02 13.82 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 C 0.51 10.18 6.87 -10.98 -0.08 10.11 16 15 O -0.54 -12.07 15.28 5.55 0.08 -11.99 16 16 C 0.14 2.60 2.86 -69.08 -0.20 2.40 16 17 H 0.15 2.56 6.27 -51.93 -0.33 2.23 16 18 C -0.17 -2.82 9.33 37.16 0.35 -2.47 16 19 N -0.12 -2.22 3.62 -5.90 -0.02 -2.24 16 20 N -0.02 -0.41 11.89 60.35 0.72 0.30 16 21 N -0.29 -5.43 12.23 32.16 0.39 -5.04 16 22 C 0.19 3.34 7.94 -156.31 -1.24 2.10 16 23 C 0.00 -0.03 5.88 -104.89 -0.62 -0.65 16 24 C -0.08 -0.96 9.70 -39.26 -0.38 -1.34 16 25 C -0.12 -1.14 10.03 -39.63 -0.40 -1.54 16 26 C -0.11 -0.93 10.04 -39.52 -0.40 -1.32 16 27 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 28 C -0.08 -1.01 9.70 -39.27 -0.38 -1.39 16 29 N -0.30 -5.47 11.85 32.17 0.38 -5.09 16 30 H 0.09 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.10 1.30 7.84 -52.49 -0.41 0.88 16 32 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.09 1.51 7.73 -51.93 -0.40 1.11 16 34 H 0.09 1.51 7.31 -51.93 -0.38 1.13 16 35 H 0.04 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.04 0.82 5.72 -51.93 -0.30 0.52 16 37 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 38 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 39 H 0.13 2.41 5.51 -51.93 -0.29 2.13 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.14 1.56 7.89 -52.48 -0.41 1.14 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.13 1.58 7.88 -52.48 -0.41 1.16 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -28.41 388.30 -7.23 -35.65 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.85 Total: 6.40 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.08 Total: -4.54 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 1.78 Total: -45.20 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.41 -7.23 -35.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292459912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.828 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds