Wall clock time and date at job start Sat Apr 11 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47301 * 2 1 4 4 C 1.50703 * 109.47092 * 119.99707 * 2 1 3 5 5 H 1.07999 * 120.00014 * 119.99674 * 4 2 1 6 6 C 1.37877 * 119.99763 * 300.00107 * 4 2 1 7 7 N 1.31514 * 120.00128 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99694 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47195 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46795 * 119.99932 * 8 6 4 11 11 H 1.48498 * 109.46730 * 239.99749 * 8 6 4 12 12 N 1.46498 * 109.47347 * 239.99391 * 2 1 3 13 13 C 1.46504 * 120.00241 * 300.00399 * 12 2 1 14 14 S 1.65597 * 120.00132 * 119.99784 * 12 2 1 15 15 O 1.42102 * 106.40533 * 156.46516 * 14 12 2 16 16 O 1.42103 * 106.40130 * 23.54139 * 14 12 2 17 17 N 1.65595 * 107.22109 * 270.00633 * 14 12 2 18 18 C 1.46504 * 120.00178 * 64.99561 * 17 14 12 19 19 C 1.53005 * 109.47067 * 165.00231 * 18 17 14 20 20 C 1.53000 * 109.47189 * 59.99997 * 19 18 17 21 21 C 1.52997 * 109.47004 * 299.99799 * 19 18 17 22 22 C 1.50706 * 109.46887 * 180.02562 * 19 18 17 23 23 C 1.38227 * 119.61686 * 165.02650 * 22 19 18 24 24 C 1.38627 * 119.15663 * 179.70253 * 23 22 19 25 25 C 1.38669 * 118.42388 * 0.51169 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.50231 * 25 24 23 27 27 N 1.31856 * 119.61480 * 344.99568 * 22 19 18 28 28 H 1.09002 * 109.47107 * 299.99968 * 1 2 3 29 29 H 1.09001 * 109.47125 * 60.00537 * 1 2 3 30 30 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99432 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46830 * 269.99621 * 13 12 2 33 33 H 1.09004 * 109.46925 * 29.99720 * 13 12 2 34 34 H 1.09003 * 109.47542 * 149.99508 * 13 12 2 35 35 H 0.97007 * 120.00080 * 244.99909 * 17 14 12 36 36 H 1.09000 * 109.47122 * 45.00629 * 18 17 14 37 37 H 1.09000 * 109.46915 * 285.00067 * 18 17 14 38 38 H 1.08992 * 109.47284 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47466 * 299.99975 * 20 19 18 40 40 H 1.09010 * 109.46811 * 59.99959 * 20 19 18 41 41 H 1.09000 * 109.47670 * 299.99899 * 21 19 18 42 42 H 1.08998 * 109.46868 * 60.00505 * 21 19 18 43 43 H 1.09001 * 109.46819 * 180.02562 * 21 19 18 44 44 H 1.07998 * 120.41947 * 359.94797 * 23 22 19 45 45 H 1.08008 * 120.78691 * 180.26734 * 24 23 22 46 46 H 1.08002 * 120.42244 * 179.78749 * 25 24 23 47 47 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6033 8 14 2.3225 -1.1194 4.0081 9 1 3.1474 -2.2861 3.6040 10 1 3.1472 -0.1854 4.8161 11 1 1.1677 -1.5863 4.8166 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1139 -2.2862 15 8 3.7118 -0.8792 -2.9814 16 8 3.5794 1.1828 -1.5749 17 7 1.9607 0.8088 -3.3998 18 6 1.0291 1.8616 -2.9876 19 6 0.4946 2.5833 -4.2263 20 6 -0.2329 1.5820 -5.1257 21 6 1.6606 3.2068 -4.9960 22 6 -0.4632 3.6668 -3.8022 23 6 -0.8313 4.6455 -4.7062 24 6 -1.7178 5.6340 -4.3078 25 6 -2.1947 5.6073 -3.0060 26 6 -1.7816 4.5973 -2.1582 27 7 -0.9409 3.6698 -2.5732 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7095 1.1620 3.4844 32 1 2.4158 -2.7378 -0.9715 33 1 0.6904 -2.3003 -0.9845 34 1 1.6238 -2.2855 -2.5001 35 1 1.9861 0.5186 -4.3251 36 1 1.5475 2.5750 -2.3469 37 1 0.1984 1.4174 -2.4392 38 1 -0.6141 2.0962 -6.0079 39 1 0.4601 0.7987 -5.4324 40 1 -1.0637 1.1378 -4.5772 41 1 2.1790 3.9202 -4.3553 42 1 2.3537 2.4235 -5.3028 43 1 1.2798 3.7214 -5.8783 44 1 -0.4364 4.6378 -5.7114 45 1 -2.0265 6.4089 -4.9940 46 1 -2.8840 6.3635 -2.6605 47 1 -2.1516 4.5670 -1.1440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295329062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:02 Heat of formation + Delta-G solvation = -41.777647 kcal Electronic energy + Delta-G solvation = -29373.260453 eV Core-core repulsion = 25489.980446 eV Total energy + Delta-G solvation = -3883.280008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58326 -37.48481 -36.54044 -36.05573 -35.11634 -33.15052 -32.55779 -32.49712 -30.04424 -29.00467 -27.41050 -26.14887 -25.49388 -25.05136 -23.59415 -23.17799 -20.68553 -19.67548 -18.83500 -17.44340 -16.82084 -16.78153 -16.33626 -16.10182 -15.49462 -15.34439 -14.87229 -14.78190 -14.24220 -14.16663 -13.72870 -13.48661 -13.37890 -13.19698 -13.05565 -12.70868 -12.48406 -12.29676 -11.96024 -11.94229 -11.67704 -11.62905 -11.35731 -11.29290 -11.18638 -11.14483 -11.13405 -10.91568 -10.75803 -10.70973 -10.33852 -10.17839 -9.95622 -9.94543 -9.41309 -9.15261 -9.06184 -9.00511 -8.38156 -7.87685 -5.99815 -4.05858 1.02703 1.21570 1.32378 3.32085 3.40062 3.44618 3.62219 3.73360 4.08807 4.23331 4.45607 4.47707 4.76337 4.82021 4.89615 4.96605 5.03268 5.06749 5.15144 5.31356 5.46527 5.50735 5.55833 5.65042 5.67854 5.69586 5.77875 5.90737 5.96886 5.99986 6.10197 6.13109 6.22513 6.24490 6.34951 6.47593 6.63296 6.71691 6.89810 6.96811 7.12704 7.28171 7.60455 7.73231 7.88536 8.00529 8.14246 8.36794 8.96477 9.59416 11.05606 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004180 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.612013 B = 6696.608131 C = 8338.998089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.112 3.888 14 S 2.780 3.220 15 O -1.000 7.000 16 O -0.975 6.975 17 N -1.136 6.136 18 C 0.140 3.860 19 C -0.021 4.021 20 C -0.137 4.137 21 C -0.142 4.142 22 C 0.145 3.855 23 C -0.170 4.170 24 C -0.077 4.077 25 C -0.182 4.182 26 C 0.108 3.892 27 N -0.469 5.469 28 H 0.092 0.908 29 H 0.017 0.983 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.405 0.595 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 7.234 -16.801 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.833 5.833 13 C -0.035 4.035 14 S 2.789 3.211 15 O -0.984 6.984 16 O -0.958 6.958 17 N -0.896 5.896 18 C 0.014 3.986 19 C -0.024 4.024 20 C -0.195 4.195 21 C -0.200 4.200 22 C 0.006 3.994 23 C -0.190 4.190 24 C -0.103 4.103 25 C -0.202 4.202 26 C -0.049 4.049 27 N -0.178 5.178 28 H 0.111 0.889 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.239 0.761 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.576 6.822 -15.859 18.474 hybrid contribution -0.526 0.196 -0.023 0.562 sum -7.102 7.018 -15.882 18.760 Atomic orbital electron populations 1.22141 0.98180 0.99486 1.00906 1.18735 0.91354 0.92959 0.80473 0.92306 1.21386 1.31363 1.12893 0.90120 0.92009 1.24896 0.95044 0.95026 0.98902 1.69884 1.36682 1.22682 1.23483 0.86480 0.78577 0.79692 0.82880 1.19782 1.20965 1.21068 1.57675 1.70028 1.19797 1.35815 1.21110 1.01568 0.82105 0.98678 1.01890 0.73555 0.73143 0.72514 1.93538 1.69771 1.60224 1.74907 1.93593 1.73923 1.55867 1.72413 1.56268 1.57712 1.51903 1.23674 1.21187 0.93116 0.89261 0.95052 1.19666 0.93528 0.92934 0.96236 1.21866 1.00593 0.98293 0.98700 1.21950 0.97090 1.01254 0.99687 1.21056 0.94724 0.94215 0.89355 1.21875 0.99828 0.96111 1.01199 1.21531 0.95113 0.97577 0.96063 1.22152 1.02345 1.00742 0.94937 1.22878 0.92401 0.89520 1.00060 1.67585 1.09284 1.25026 1.15866 0.88948 0.96453 0.95067 0.92881 0.93436 0.91051 0.93411 0.76145 0.90176 0.89815 0.92340 0.91560 0.91857 0.91887 0.91390 0.92241 0.84943 0.85119 0.84970 0.82427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.95 37.16 0.33 -3.06 16 2 C 0.27 6.64 2.62 -69.08 -0.18 6.46 16 3 H 0.06 1.63 6.91 -51.93 -0.36 1.27 16 4 C -0.52 -14.21 8.37 -34.44 -0.29 -14.49 16 5 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.99 -21.04 3.12 -115.85 -0.36 -21.40 16 13 C 0.11 2.05 9.53 59.85 0.57 2.63 16 14 S 2.78 55.90 6.09 -107.50 -0.66 55.25 16 15 O -1.00 -21.13 17.21 -57.17 -0.98 -22.11 16 16 O -0.97 -23.39 16.17 -57.17 -0.92 -24.31 16 17 N -1.14 -17.23 5.39 -10.61 -0.06 -17.28 16 18 C 0.14 2.16 4.47 -4.04 -0.02 2.14 16 19 C -0.02 -0.25 0.64 -155.66 -0.10 -0.35 16 20 C -0.14 -1.34 8.24 37.16 0.31 -1.03 16 21 C -0.14 -1.46 7.92 37.16 0.29 -1.16 16 22 C 0.15 1.81 5.56 -82.58 -0.46 1.35 16 23 C -0.17 -1.67 9.08 -39.44 -0.36 -2.03 16 24 C -0.08 -0.67 10.18 -39.28 -0.40 -1.07 16 25 C -0.18 -1.70 10.11 -39.44 -0.40 -2.10 16 26 C 0.11 1.29 11.18 -17.55 -0.20 1.10 16 27 N -0.47 -6.75 9.03 -9.47 -0.09 -6.84 16 28 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 29 H 0.02 0.35 6.18 -51.93 -0.32 0.02 16 30 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 34 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 35 H 0.41 4.92 6.47 -34.47 -0.22 4.70 16 36 H 0.08 1.43 7.75 -51.93 -0.40 1.03 16 37 H 0.08 1.40 5.89 -51.93 -0.31 1.09 16 38 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 39 H 0.07 0.58 6.60 -51.93 -0.34 0.24 16 40 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.66 7.19 -51.93 -0.37 0.29 16 43 H 0.06 0.47 6.70 -51.93 -0.35 0.12 16 44 H 0.13 0.99 6.73 -52.49 -0.35 0.64 16 45 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -33.95 381.36 -9.63 -43.58 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.92 Total: 5.27 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.99 Total: -9.98 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: 0.12 Total: -69.89 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.91 Total: -46.42 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 55.90 SS G_CDS: -0.66 Total: 55.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.95 -9.63 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295329062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.799 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds