Wall clock time and date at job start Sat Apr 11 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47301 * 2 1 4 4 C 1.50703 * 109.47092 * 119.99707 * 2 1 3 5 5 H 1.07999 * 120.00014 * 119.99674 * 4 2 1 6 6 C 1.37877 * 119.99763 * 300.00107 * 4 2 1 7 7 N 1.31514 * 120.00128 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99694 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47195 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46795 * 119.99932 * 8 6 4 11 11 H 1.48498 * 109.46730 * 239.99749 * 8 6 4 12 12 N 1.46498 * 109.47347 * 239.99391 * 2 1 3 13 13 C 1.46504 * 120.00241 * 300.00399 * 12 2 1 14 14 S 1.65597 * 120.00132 * 119.99784 * 12 2 1 15 15 O 1.42102 * 106.40533 * 156.46516 * 14 12 2 16 16 O 1.42103 * 106.40130 * 23.54139 * 14 12 2 17 17 N 1.65595 * 107.22109 * 270.00633 * 14 12 2 18 18 C 1.46504 * 120.00178 * 64.99561 * 17 14 12 19 19 C 1.53005 * 109.47067 * 165.00231 * 18 17 14 20 20 C 1.53000 * 109.47189 * 59.99997 * 19 18 17 21 21 C 1.52997 * 109.47004 * 299.99799 * 19 18 17 22 22 C 1.50706 * 109.46887 * 180.02562 * 19 18 17 23 23 C 1.38227 * 119.61686 * 165.02650 * 22 19 18 24 24 C 1.38627 * 119.15663 * 179.70253 * 23 22 19 25 25 C 1.38669 * 118.42388 * 0.51169 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.50231 * 25 24 23 27 27 N 1.31856 * 119.61480 * 344.99568 * 22 19 18 28 28 H 1.09002 * 109.47107 * 299.99968 * 1 2 3 29 29 H 1.09001 * 109.47125 * 60.00537 * 1 2 3 30 30 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99432 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46830 * 269.99621 * 13 12 2 33 33 H 1.09004 * 109.46925 * 29.99720 * 13 12 2 34 34 H 1.09003 * 109.47542 * 149.99508 * 13 12 2 35 35 H 0.97007 * 120.00080 * 244.99909 * 17 14 12 36 36 H 1.09000 * 109.47122 * 45.00629 * 18 17 14 37 37 H 1.09000 * 109.46915 * 285.00067 * 18 17 14 38 38 H 1.08992 * 109.47284 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47466 * 299.99975 * 20 19 18 40 40 H 1.09010 * 109.46811 * 59.99959 * 20 19 18 41 41 H 1.09000 * 109.47670 * 299.99899 * 21 19 18 42 42 H 1.08998 * 109.46868 * 60.00505 * 21 19 18 43 43 H 1.09001 * 109.46819 * 180.02562 * 21 19 18 44 44 H 1.07998 * 120.41947 * 359.94797 * 23 22 19 45 45 H 1.08008 * 120.78691 * 180.26734 * 24 23 22 46 46 H 1.08002 * 120.42244 * 179.78749 * 25 24 23 47 47 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6033 8 14 2.3225 -1.1194 4.0081 9 1 3.1474 -2.2861 3.6040 10 1 3.1472 -0.1854 4.8161 11 1 1.1677 -1.5863 4.8166 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1139 -2.2862 15 8 3.7118 -0.8792 -2.9814 16 8 3.5794 1.1828 -1.5749 17 7 1.9607 0.8088 -3.3998 18 6 1.0291 1.8616 -2.9876 19 6 0.4946 2.5833 -4.2263 20 6 -0.2329 1.5820 -5.1257 21 6 1.6606 3.2068 -4.9960 22 6 -0.4632 3.6668 -3.8022 23 6 -0.8313 4.6455 -4.7062 24 6 -1.7178 5.6340 -4.3078 25 6 -2.1947 5.6073 -3.0060 26 6 -1.7816 4.5973 -2.1582 27 7 -0.9409 3.6698 -2.5732 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7095 1.1620 3.4844 32 1 2.4158 -2.7378 -0.9715 33 1 0.6904 -2.3003 -0.9845 34 1 1.6238 -2.2855 -2.5001 35 1 1.9861 0.5186 -4.3251 36 1 1.5475 2.5750 -2.3469 37 1 0.1984 1.4174 -2.4392 38 1 -0.6141 2.0962 -6.0079 39 1 0.4601 0.7987 -5.4324 40 1 -1.0637 1.1378 -4.5772 41 1 2.1790 3.9202 -4.3553 42 1 2.3537 2.4235 -5.3028 43 1 1.2798 3.7214 -5.8783 44 1 -0.4364 4.6378 -5.7114 45 1 -2.0265 6.4089 -4.9940 46 1 -2.8840 6.3635 -2.6605 47 1 -2.1516 4.5670 -1.1440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295329062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:02 Heat of formation + Delta-G solvation = -66.010855 kcal Electronic energy + Delta-G solvation = -29374.311284 eV Core-core repulsion = 25489.980446 eV Total energy + Delta-G solvation = -3884.330839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41687 -38.58032 -38.20553 -37.86577 -36.88405 -34.52134 -34.31705 -33.34424 -30.90267 -30.86993 -28.18859 -27.34811 -27.21687 -26.95861 -24.42853 -24.03928 -22.58239 -20.60358 -20.38948 -19.01483 -18.52330 -18.14427 -17.65476 -17.37830 -16.92581 -16.58012 -16.17494 -15.90331 -15.76725 -15.19387 -15.07312 -14.78001 -14.66671 -14.59123 -14.31421 -13.90203 -13.72205 -13.40690 -13.35885 -13.26190 -13.15716 -13.10092 -12.98009 -12.92237 -12.78257 -12.71916 -12.57617 -12.20235 -12.15359 -12.08678 -12.03371 -11.87546 -11.74757 -11.10696 -10.74157 -10.55058 -10.45428 -10.15766 -9.82878 -9.65907 -8.09992 -6.23952 -0.31658 0.24420 0.46922 1.40871 1.43324 1.54357 2.05044 2.43732 2.63566 2.92415 3.17643 3.25981 3.39052 3.70698 3.91523 3.96360 4.09514 4.14508 4.17432 4.30327 4.34782 4.47190 4.66429 4.70005 4.71427 4.79848 4.81255 4.85423 4.89392 4.95046 5.00982 5.04653 5.10094 5.15260 5.18044 5.23036 5.28347 5.31977 5.38233 5.41205 5.63066 5.73108 5.87971 5.89409 6.12914 6.22614 6.32778 6.83886 7.18460 7.44785 8.94211 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004180 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.612013 B = 6696.608131 C = 8338.998089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.276 3.724 3 H 0.021 0.979 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.998 5.998 13 C 0.105 3.895 14 S 2.795 3.205 15 O -1.008 7.008 16 O -1.018 7.018 17 N -1.111 6.111 18 C 0.145 3.855 19 C -0.017 4.017 20 C -0.134 4.134 21 C -0.142 4.142 22 C 0.121 3.879 23 C -0.166 4.166 24 C -0.074 4.074 25 C -0.175 4.175 26 C 0.079 3.921 27 N -0.517 5.517 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.423 0.577 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.160 0.840 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 7.421 -19.309 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.172 3.828 3 H 0.039 0.961 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.840 5.840 13 C -0.041 4.041 14 S 2.804 3.196 15 O -0.992 6.992 16 O -1.002 7.002 17 N -0.876 5.876 18 C 0.019 3.981 19 C -0.019 4.019 20 C -0.191 4.191 21 C -0.200 4.200 22 C -0.018 4.018 23 C -0.186 4.186 24 C -0.100 4.100 25 C -0.195 4.195 26 C -0.077 4.077 27 N -0.227 5.227 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.179 0.821 45 H 0.185 0.815 46 H 0.178 0.822 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.570 6.981 -18.389 21.076 hybrid contribution -0.233 0.200 0.704 0.768 sum -7.802 7.181 -17.685 20.621 Atomic orbital electron populations 1.21901 0.96844 0.99866 1.00451 1.18351 0.92172 0.91075 0.81192 0.96139 1.21686 1.31630 1.12988 0.91549 0.92623 1.25647 0.95222 0.95715 1.01647 1.70008 1.37295 1.23639 1.24185 0.85551 0.78296 0.78579 0.79462 1.19447 1.20992 1.19869 1.57565 1.70014 1.21118 1.35301 1.21330 1.01598 0.80230 1.00931 1.01213 0.73507 0.72425 0.72423 1.93517 1.70399 1.60459 1.74810 1.93540 1.75386 1.57411 1.73851 1.55704 1.56837 1.51330 1.23750 1.21082 0.91748 0.88482 0.96816 1.19682 0.94257 0.93253 0.94751 1.21873 1.00171 0.98172 0.98909 1.21988 0.96475 1.01222 1.00298 1.21237 0.95528 0.95462 0.89535 1.22170 0.99417 0.95134 1.01839 1.22000 0.94001 0.97813 0.96179 1.22443 1.01968 1.00082 0.94993 1.23059 0.93169 0.90601 1.00899 1.67470 1.10851 1.26824 1.17520 0.91647 0.94651 0.94056 0.92703 0.94030 0.90470 0.90071 0.73923 0.93608 0.91468 0.89714 0.90455 0.93205 0.93751 0.90900 0.88917 0.82084 0.81451 0.82238 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.95 71.98 0.64 -5.55 16 2 C 0.28 14.22 2.62 44.25 0.12 14.34 16 3 H 0.02 1.22 6.91 -2.39 -0.02 1.20 16 4 C -0.54 -30.31 8.37 25.60 0.21 -30.10 16 5 H 0.06 3.12 7.65 -2.91 -0.02 3.10 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -52.80 11.32 21.45 0.24 -52.56 16 8 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 N -1.00 -43.08 3.12 -520.43 -1.62 -44.70 16 13 C 0.10 3.76 9.53 127.77 1.22 4.98 16 14 S 2.80 114.15 6.09 -56.49 -0.34 113.80 16 15 O -1.01 -41.92 17.21 -128.00 -2.20 -44.12 16 16 O -1.02 -51.12 16.17 -128.00 -2.07 -53.19 16 17 N -1.11 -33.53 5.39 -187.47 -1.01 -34.54 16 18 C 0.15 4.62 4.47 86.38 0.39 5.00 16 19 C -0.02 -0.39 0.64 -52.93 -0.03 -0.42 16 20 C -0.13 -2.30 8.24 71.98 0.59 -1.71 16 21 C -0.14 -2.66 7.92 71.98 0.57 -2.09 16 22 C 0.12 2.93 5.56 42.55 0.24 3.17 16 23 C -0.17 -2.81 9.08 22.36 0.20 -2.61 16 24 C -0.07 -1.07 10.18 22.47 0.23 -0.84 16 25 C -0.18 -3.00 10.11 22.36 0.23 -2.77 16 26 C 0.08 1.94 11.18 84.67 0.95 2.89 16 27 N -0.52 -15.47 9.03 -183.88 -1.66 -17.13 16 28 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 29 H 0.03 1.49 6.18 -2.39 -0.01 1.48 16 30 H 0.04 1.81 6.66 -2.39 -0.02 1.80 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 2.67 6.43 -2.38 -0.02 2.65 16 34 H 0.08 2.35 7.79 -2.39 -0.02 2.33 16 35 H 0.42 9.61 6.47 -96.74 -0.63 8.98 16 36 H 0.05 1.77 7.75 -2.39 -0.02 1.75 16 37 H 0.07 2.36 5.89 -2.39 -0.01 2.34 16 38 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 39 H 0.08 1.13 6.60 -2.39 -0.02 1.11 16 40 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.26 7.19 -2.39 -0.02 1.25 16 43 H 0.09 1.10 6.70 -2.39 -0.02 1.09 16 44 H 0.16 1.69 6.73 -2.91 -0.02 1.67 16 45 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 46 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -76.74 381.36 -0.29 -77.03 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.36 Total: 23.14 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 6.00 Total: -14.28 kcal Atomic # 7 Polarization: -144.88 SS G_CDS: -4.05 Total: -148.93 kcal Atomic # 8 Polarization: -93.04 SS G_CDS: -4.27 Total: -97.32 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 114.15 SS G_CDS: -0.34 Total: 113.80 kcal Total: -76.74 -0.29 -77.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295329062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.017 kcal (2) G-P(sol) polarization free energy of solvation -76.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds