Wall clock time and date at job start Sat Apr 11 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46853 * 2 1 4 4 C 1.46498 * 120.00319 * 274.35587 * 3 2 1 5 5 C 1.50701 * 109.47363 * 280.45062 * 4 3 2 6 6 H 1.07995 * 119.99641 * 3.65179 * 5 4 3 7 7 C 1.37878 * 120.00156 * 183.65373 * 5 4 3 8 8 N 1.31511 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47229 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47234 * 119.99999 * 9 7 5 12 12 H 1.48497 * 109.47088 * 240.00079 * 9 7 5 13 13 S 1.65602 * 120.00097 * 94.35979 * 3 2 1 14 14 O 1.42102 * 106.40058 * 330.35666 * 13 3 2 15 15 O 1.42097 * 106.40282 * 197.44149 * 13 3 2 16 16 N 1.65598 * 107.21890 * 83.89879 * 13 3 2 17 17 C 1.46494 * 120.00066 * 64.92184 * 16 13 3 18 18 C 1.50704 * 109.47356 * 164.92181 * 17 16 13 19 19 C 1.38127 * 120.03768 * 260.25475 * 18 17 16 20 20 C 1.38255 * 120.07709 * 180.27167 * 19 18 17 21 21 C 1.38309 * 120.15208 * 359.74301 * 20 19 18 22 22 C 1.38094 * 120.07004 * 359.97438 * 21 20 19 23 23 C 1.38888 * 120.03769 * 79.99266 * 18 17 16 24 24 N 1.39671 * 120.07945 * 0.02562 * 23 18 17 25 25 C 1.46899 * 111.00039 * 239.72389 * 24 23 18 26 26 C 1.46900 * 111.00083 * 115.76581 * 24 23 18 27 27 H 1.09001 * 109.46982 * 305.07903 * 1 2 3 28 28 H 1.09000 * 109.47378 * 65.08310 * 1 2 3 29 29 H 1.09003 * 109.46633 * 185.08244 * 1 2 3 30 30 H 1.08997 * 109.47122 * 240.00668 * 2 1 3 31 31 H 1.08997 * 109.47796 * 120.00131 * 2 1 3 32 32 H 1.09000 * 109.46758 * 40.44995 * 4 3 2 33 33 H 1.09000 * 109.47455 * 160.45055 * 4 3 2 34 34 H 0.96998 * 120.00656 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99939 * 244.91640 * 16 13 3 36 36 H 1.08997 * 109.47484 * 44.91686 * 17 16 13 37 37 H 1.09005 * 109.46963 * 284.91642 * 17 16 13 38 38 H 1.07996 * 119.96013 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.92759 * 179.76253 * 20 19 18 40 40 H 1.07992 * 119.96733 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.03206 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.47436 * 60.00095 * 25 24 23 43 43 H 1.09001 * 109.47121 * 299.99358 * 25 24 23 44 44 H 1.09006 * 109.47111 * 180.02562 * 25 24 23 45 45 H 1.09007 * 109.47122 * 183.95485 * 26 24 23 46 46 H 1.08995 * 109.47052 * 303.95545 * 26 24 23 47 47 H 1.08998 * 109.47024 * 63.95700 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1716 2.1040 -1.2650 5 6 3.4541 1.6804 -1.9334 6 1 4.0617 0.9039 -1.4928 7 6 3.8517 2.2842 -3.1075 8 7 3.1116 3.2295 -3.6443 9 14 5.4411 1.7586 -3.9364 10 1 6.0840 0.6843 -3.1378 11 1 5.1440 1.2519 -5.3002 12 1 6.3590 2.9221 -4.0296 13 16 2.3970 2.1256 1.4300 14 8 1.5554 1.5476 2.4184 15 8 2.4335 3.5200 1.1592 16 7 3.9452 1.6838 1.8175 17 6 5.0607 2.0977 0.9629 18 6 6.3594 1.9022 1.7021 19 6 6.9784 2.9776 2.3088 20 6 8.1727 2.8002 2.9823 21 6 8.7490 1.5450 3.0557 22 6 8.1325 0.4644 2.4564 23 6 6.9324 0.6393 1.7787 24 7 6.3067 -0.4514 1.1707 25 6 5.9791 -1.4883 2.1584 26 6 7.1362 -0.9982 0.0886 27 1 -0.3633 0.5906 0.8410 28 1 -0.3634 0.4330 -0.9320 29 1 -0.3633 -1.0237 0.0910 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3291 1.8762 -1.9180 33 1 2.2005 3.1760 -1.0698 34 1 3.3911 3.6540 -4.4704 35 1 4.1135 1.1511 2.6105 36 1 4.9468 3.1495 0.7007 37 1 5.0655 1.4952 0.0545 38 1 6.5310 3.9590 2.2535 39 1 8.6566 3.6435 3.4525 40 1 9.6822 1.4099 3.5823 41 1 8.5829 -0.5155 2.5145 42 1 5.3072 -1.0745 2.9103 43 1 6.8941 -1.8339 2.6393 44 1 5.4933 -2.3261 1.6581 45 1 6.5957 -1.8008 -0.4134 46 1 7.3640 -0.2096 -0.6285 47 1 8.0642 -1.3900 0.5049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336916387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:16 Heat of formation + Delta-G solvation = -40.304738 kcal Electronic energy + Delta-G solvation = -29770.662696 eV Core-core repulsion = 25887.446558 eV Total energy + Delta-G solvation = -3883.216138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03787 -36.58450 -36.47455 -35.93883 -35.09595 -34.84363 -32.64167 -30.82222 -29.84527 -29.83888 -27.58701 -26.56042 -25.41931 -24.38911 -23.07135 -21.70450 -21.55778 -20.66423 -18.69261 -17.30394 -16.90325 -16.66151 -16.34786 -15.78843 -15.65959 -15.28620 -15.00206 -14.77675 -14.29532 -14.18101 -13.83958 -13.58094 -13.28194 -13.03349 -12.83515 -12.59085 -12.43595 -12.27414 -12.11221 -11.98221 -11.93257 -11.72914 -11.66317 -11.59531 -11.33576 -11.21029 -11.11524 -11.02784 -10.89372 -10.86352 -10.45408 -10.29314 -9.94826 -9.69006 -8.88294 -8.81916 -8.63225 -8.44861 -8.40878 -7.94584 -6.05618 -4.10806 1.19338 1.30727 1.56909 3.26388 3.34995 3.36623 3.57935 3.85046 3.87147 4.32177 4.40296 4.84086 4.87818 5.01824 5.10479 5.23562 5.25049 5.28484 5.37211 5.39040 5.51446 5.51738 5.58421 5.72603 5.81791 5.83461 5.87642 5.93925 5.97033 5.97985 6.15933 6.27772 6.37112 6.41728 6.48744 6.57608 6.72420 6.75723 6.81311 6.87524 6.88678 7.39865 7.43487 7.49172 7.56666 7.78689 7.93417 8.23666 8.95477 9.54420 11.02553 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.005740 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.201626 B = 4876.485911 C = 6129.170282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.136 3.864 3 N -0.989 5.989 4 C 0.243 3.757 5 C -0.533 4.533 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.284 1.284 13 S 2.786 3.214 14 O -1.003 7.003 15 O -0.982 6.982 16 N -1.119 6.119 17 C 0.169 3.831 18 C -0.065 4.065 19 C -0.099 4.099 20 C -0.126 4.126 21 C -0.113 4.113 22 C -0.154 4.154 23 C 0.101 3.899 24 N -0.501 5.501 25 C 0.031 3.969 26 C 0.030 3.970 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.262 0.738 35 H 0.404 0.596 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 -7.808 11.269 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 N -0.831 5.831 4 C 0.121 3.879 5 C -0.572 4.572 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.716 3.284 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.210 1.210 13 S 2.794 3.206 14 O -0.987 6.987 15 O -0.965 6.965 16 N -0.876 5.876 17 C 0.043 3.957 18 C -0.068 4.068 19 C -0.119 4.119 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.174 4.174 23 C 0.007 3.993 24 N -0.222 5.222 25 C -0.116 4.116 26 C -0.116 4.116 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.236 0.764 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.545 -6.832 11.189 15.126 hybrid contribution 2.120 -1.078 -0.192 2.386 sum 9.665 -7.910 10.997 16.641 Atomic orbital electron populations 1.22221 0.97202 1.01159 1.02357 1.20896 0.93284 0.82949 1.01986 1.57672 1.78712 1.22898 1.23816 1.19209 0.97171 0.92593 0.78975 1.21625 1.06952 1.20884 1.07737 0.91281 1.24939 0.96952 0.94850 0.97112 1.69945 1.37945 1.24990 1.19962 0.86609 0.83777 0.78607 0.79453 1.19419 1.21191 1.21048 1.01687 0.72611 0.73695 0.72619 1.93539 1.65314 1.79802 1.60093 1.93568 1.86633 1.31145 1.85184 1.55866 1.24305 1.70516 1.36952 1.20165 0.81202 1.01310 0.93004 1.20019 0.96997 0.91775 0.97961 1.21203 0.95239 0.98963 0.96447 1.21144 0.96059 0.97171 0.99988 1.20971 0.99684 0.92797 0.99770 1.21576 0.96459 0.99114 1.00233 1.18719 0.92287 0.91854 0.96453 1.59515 1.44224 1.07052 1.11363 1.22425 0.99871 0.94313 0.94987 1.22440 0.94734 1.00627 0.93820 0.92551 0.92257 0.92605 0.90206 0.92260 0.94914 0.92758 0.92780 0.76438 0.90261 0.87886 0.85238 0.86054 0.86429 0.86590 0.91255 0.95586 0.90815 0.90711 0.90896 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 37.16 0.38 -2.36 16 2 C 0.14 2.36 6.01 -4.04 -0.02 2.34 16 3 N -0.99 -20.21 2.84 -115.67 -0.33 -20.54 16 4 C 0.24 5.92 5.46 -5.19 -0.03 5.89 16 5 C -0.53 -13.41 8.50 -34.44 -0.29 -13.70 16 6 H 0.07 1.68 6.46 -52.49 -0.34 1.34 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 9 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 S 2.79 55.74 6.07 -107.50 -0.65 55.09 16 14 O -1.00 -20.73 17.10 -57.17 -0.98 -21.71 16 15 O -0.98 -23.07 16.02 -57.17 -0.92 -23.99 16 16 N -1.12 -18.75 6.05 -11.66 -0.07 -18.82 16 17 C 0.17 2.94 5.96 -5.20 -0.03 2.90 16 18 C -0.07 -0.97 5.29 -104.42 -0.55 -1.52 16 19 C -0.10 -1.32 9.66 -39.62 -0.38 -1.70 16 20 C -0.13 -1.41 10.04 -39.55 -0.40 -1.81 16 21 C -0.11 -1.21 10.04 -39.61 -0.40 -1.61 16 22 C -0.15 -1.79 8.62 -39.38 -0.34 -2.13 16 23 C 0.10 1.37 4.70 -83.79 -0.39 0.98 16 24 N -0.50 -6.61 4.13 -186.86 -0.77 -7.39 16 25 C 0.03 0.33 9.34 60.06 0.56 0.89 16 26 C 0.03 0.38 9.33 60.06 0.56 0.94 16 27 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.92 7.80 -51.93 -0.40 0.52 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 1.48 6.77 -51.93 -0.35 1.13 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.40 5.90 8.65 -34.47 -0.30 5.60 16 36 H 0.08 1.49 7.62 -51.93 -0.40 1.09 16 37 H 0.10 1.99 5.54 -51.93 -0.29 1.70 16 38 H 0.13 1.62 8.04 -52.49 -0.42 1.20 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 1.18 7.05 -52.48 -0.37 0.81 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.25 7.12 -51.93 -0.37 -0.12 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 46 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 47 H 0.02 0.27 7.47 -51.93 -0.39 -0.12 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -31.24 394.88 -10.88 -42.12 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.39 Total: 7.72 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.44 Total: -9.28 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -0.43 Total: -71.17 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.89 Total: -45.69 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 55.74 SS G_CDS: -0.65 Total: 55.09 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.24 -10.88 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336916387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.816 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds