Wall clock time and date at job start Sat Apr 11 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46853 * 2 1 4 4 C 1.46498 * 120.00319 * 274.35587 * 3 2 1 5 5 C 1.50701 * 109.47363 * 280.45062 * 4 3 2 6 6 H 1.07995 * 119.99641 * 3.65179 * 5 4 3 7 7 C 1.37878 * 120.00156 * 183.65373 * 5 4 3 8 8 N 1.31511 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47229 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47234 * 119.99999 * 9 7 5 12 12 H 1.48497 * 109.47088 * 240.00079 * 9 7 5 13 13 S 1.65602 * 120.00097 * 94.35979 * 3 2 1 14 14 O 1.42102 * 106.40058 * 330.35666 * 13 3 2 15 15 O 1.42097 * 106.40282 * 197.44149 * 13 3 2 16 16 N 1.65598 * 107.21890 * 83.89879 * 13 3 2 17 17 C 1.46494 * 120.00066 * 64.92184 * 16 13 3 18 18 C 1.50704 * 109.47356 * 164.92181 * 17 16 13 19 19 C 1.38127 * 120.03768 * 260.25475 * 18 17 16 20 20 C 1.38255 * 120.07709 * 180.27167 * 19 18 17 21 21 C 1.38309 * 120.15208 * 359.74301 * 20 19 18 22 22 C 1.38094 * 120.07004 * 359.97438 * 21 20 19 23 23 C 1.38888 * 120.03769 * 79.99266 * 18 17 16 24 24 N 1.39671 * 120.07945 * 0.02562 * 23 18 17 25 25 C 1.46899 * 111.00039 * 239.72389 * 24 23 18 26 26 C 1.46900 * 111.00083 * 115.76581 * 24 23 18 27 27 H 1.09001 * 109.46982 * 305.07903 * 1 2 3 28 28 H 1.09000 * 109.47378 * 65.08310 * 1 2 3 29 29 H 1.09003 * 109.46633 * 185.08244 * 1 2 3 30 30 H 1.08997 * 109.47122 * 240.00668 * 2 1 3 31 31 H 1.08997 * 109.47796 * 120.00131 * 2 1 3 32 32 H 1.09000 * 109.46758 * 40.44995 * 4 3 2 33 33 H 1.09000 * 109.47455 * 160.45055 * 4 3 2 34 34 H 0.96998 * 120.00656 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99939 * 244.91640 * 16 13 3 36 36 H 1.08997 * 109.47484 * 44.91686 * 17 16 13 37 37 H 1.09005 * 109.46963 * 284.91642 * 17 16 13 38 38 H 1.07996 * 119.96013 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.92759 * 179.76253 * 20 19 18 40 40 H 1.07992 * 119.96733 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.03206 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.47436 * 60.00095 * 25 24 23 43 43 H 1.09001 * 109.47121 * 299.99358 * 25 24 23 44 44 H 1.09006 * 109.47111 * 180.02562 * 25 24 23 45 45 H 1.09007 * 109.47122 * 183.95485 * 26 24 23 46 46 H 1.08995 * 109.47052 * 303.95545 * 26 24 23 47 47 H 1.08998 * 109.47024 * 63.95700 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1716 2.1040 -1.2650 5 6 3.4541 1.6804 -1.9334 6 1 4.0617 0.9039 -1.4928 7 6 3.8517 2.2842 -3.1075 8 7 3.1116 3.2295 -3.6443 9 14 5.4411 1.7586 -3.9364 10 1 6.0840 0.6843 -3.1378 11 1 5.1440 1.2519 -5.3002 12 1 6.3590 2.9221 -4.0296 13 16 2.3970 2.1256 1.4300 14 8 1.5554 1.5476 2.4184 15 8 2.4335 3.5200 1.1592 16 7 3.9452 1.6838 1.8175 17 6 5.0607 2.0977 0.9629 18 6 6.3594 1.9022 1.7021 19 6 6.9784 2.9776 2.3088 20 6 8.1727 2.8002 2.9823 21 6 8.7490 1.5450 3.0557 22 6 8.1325 0.4644 2.4564 23 6 6.9324 0.6393 1.7787 24 7 6.3067 -0.4514 1.1707 25 6 5.9791 -1.4883 2.1584 26 6 7.1362 -0.9982 0.0886 27 1 -0.3633 0.5906 0.8410 28 1 -0.3634 0.4330 -0.9320 29 1 -0.3633 -1.0237 0.0910 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3291 1.8762 -1.9180 33 1 2.2005 3.1760 -1.0698 34 1 3.3911 3.6540 -4.4704 35 1 4.1135 1.1511 2.6105 36 1 4.9468 3.1495 0.7007 37 1 5.0655 1.4952 0.0545 38 1 6.5310 3.9590 2.2535 39 1 8.6566 3.6435 3.4525 40 1 9.6822 1.4099 3.5823 41 1 8.5829 -0.5155 2.5145 42 1 5.3072 -1.0745 2.9103 43 1 6.8941 -1.8339 2.6393 44 1 5.4933 -2.3261 1.6581 45 1 6.5957 -1.8008 -0.4134 46 1 7.3640 -0.2096 -0.6285 47 1 8.0642 -1.3900 0.5049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336916387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:16 Heat of formation + Delta-G solvation = -61.597601 kcal Electronic energy + Delta-G solvation = -29771.586023 eV Core-core repulsion = 25887.446558 eV Total energy + Delta-G solvation = -3884.139466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99753 -38.27377 -37.62065 -37.43201 -36.84357 -36.17136 -34.61085 -31.90651 -31.46259 -30.76629 -28.47082 -28.42535 -26.63193 -25.32242 -24.88069 -23.23142 -22.67152 -21.62082 -20.29882 -18.76655 -18.51008 -18.30874 -17.81259 -17.23234 -16.77159 -16.66945 -16.28303 -15.93598 -15.75302 -15.30281 -15.11535 -14.80745 -14.67522 -14.59715 -14.19472 -13.82917 -13.70749 -13.59080 -13.46478 -13.31585 -13.19786 -13.11045 -13.06738 -12.98908 -12.87713 -12.71854 -12.65529 -12.55037 -12.23605 -12.12028 -12.02221 -11.97558 -11.63090 -11.51573 -10.53086 -10.30691 -9.84009 -9.70217 -9.54432 -9.32722 -8.09912 -6.21186 -0.26564 0.36776 0.43267 1.43783 1.46443 1.57379 2.09239 2.47326 2.65247 2.85527 2.97204 3.22735 3.50469 3.86825 3.95948 4.04667 4.17631 4.23894 4.41667 4.42482 4.45391 4.48870 4.50579 4.58353 4.65931 4.72429 4.77265 4.81934 4.88815 5.01309 5.02785 5.04103 5.08381 5.20041 5.22279 5.35189 5.46567 5.47938 5.55981 5.60058 5.65688 5.85982 5.93222 5.97785 6.01399 6.20074 6.27695 6.50138 6.92251 7.47932 8.98838 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.005740 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.201626 B = 4876.485911 C = 6129.170282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.127 3.873 3 N -0.992 5.992 4 C 0.258 3.742 5 C -0.525 4.525 6 H 0.079 0.921 7 C 0.011 3.989 8 N -0.932 5.932 9 Si 0.949 3.051 10 H -0.251 1.251 11 H -0.285 1.285 12 H -0.288 1.288 13 S 2.799 3.201 14 O -1.007 7.007 15 O -1.020 7.020 16 N -1.100 6.100 17 C 0.178 3.822 18 C -0.091 4.091 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.105 4.105 22 C -0.153 4.153 23 C 0.096 3.904 24 N -0.523 5.523 25 C 0.031 3.969 26 C 0.033 3.967 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.016 0.984 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.416 0.584 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.136 0.864 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.080 -10.152 12.821 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.002 3.998 3 N -0.833 5.833 4 C 0.135 3.865 5 C -0.564 4.564 6 H 0.097 0.903 7 C -0.187 4.187 8 N -0.572 5.572 9 Si 0.775 3.225 10 H -0.174 1.174 11 H -0.211 1.211 12 H -0.214 1.214 13 S 2.807 3.193 14 O -0.991 6.991 15 O -1.004 7.004 16 N -0.862 5.862 17 C 0.052 3.948 18 C -0.094 4.094 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.123 4.123 22 C -0.173 4.173 23 C 0.001 3.999 24 N -0.244 5.244 25 C -0.115 4.115 26 C -0.114 4.114 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.251 0.749 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.154 0.846 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.977 -9.216 12.775 18.647 hybrid contribution 1.370 -0.370 -0.580 1.533 sum 11.347 -9.587 12.196 19.220 Atomic orbital electron populations 1.22202 0.96139 1.03052 1.01264 1.21172 0.94268 0.81228 1.03151 1.57561 1.79366 1.24077 1.22322 1.18750 0.96511 0.91075 0.80203 1.21850 1.06858 1.20373 1.07310 0.90300 1.25742 1.00077 0.94921 0.97998 1.70081 1.39964 1.26575 1.20589 0.85626 0.79930 0.78490 0.78456 1.17437 1.21075 1.21424 1.01125 0.73088 0.72804 0.72264 1.93523 1.66032 1.79599 1.59967 1.93520 1.87356 1.33849 1.85683 1.55489 1.23020 1.70383 1.37278 1.19920 0.82835 0.99163 0.92858 1.19871 0.96342 0.93344 0.99799 1.21305 0.96361 0.98486 0.97106 1.21433 0.95051 0.98557 0.99129 1.21375 1.00340 0.92033 0.98579 1.21787 0.95598 1.00420 0.99499 1.18784 0.93040 0.91314 0.96744 1.59466 1.44849 1.07790 1.12267 1.22461 1.00620 0.93854 0.94562 1.22400 0.95701 0.99884 0.93401 0.93642 0.93387 0.89169 0.90117 0.89911 0.96596 0.96272 0.92873 0.74902 0.92792 0.89896 0.85646 0.83508 0.83246 0.84619 0.91611 0.93981 0.90037 0.90233 0.93167 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.24 10.24 71.98 0.74 -4.50 16 2 C 0.13 4.33 6.01 86.38 0.52 4.85 16 3 N -0.99 -41.29 2.84 -519.86 -1.48 -42.77 16 4 C 0.26 13.13 5.46 85.63 0.47 13.59 16 5 C -0.52 -26.95 8.50 25.60 0.22 -26.73 16 6 H 0.08 3.84 6.46 -2.91 -0.02 3.82 16 7 C 0.01 0.62 5.46 84.66 0.46 1.08 16 8 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 9 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 10 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 13 S 2.80 114.18 6.07 -56.49 -0.34 113.84 16 14 O -1.01 -41.26 17.10 -128.00 -2.19 -43.45 16 15 O -1.02 -50.15 16.02 -128.00 -2.05 -52.20 16 16 N -1.10 -37.12 6.05 -190.79 -1.15 -38.28 16 17 C 0.18 6.34 5.96 85.64 0.51 6.85 16 18 C -0.09 -2.66 5.29 -19.73 -0.10 -2.76 16 19 C -0.11 -2.92 9.66 22.25 0.21 -2.71 16 20 C -0.12 -2.44 10.04 22.29 0.22 -2.22 16 21 C -0.10 -1.84 10.04 22.25 0.22 -1.61 16 22 C -0.15 -3.05 8.62 22.40 0.19 -2.85 16 23 C 0.10 2.42 4.70 38.21 0.18 2.60 16 24 N -0.52 -12.82 4.13 -745.09 -3.08 -15.90 16 25 C 0.03 0.59 9.34 127.69 1.19 1.78 16 26 C 0.03 0.74 9.33 127.69 1.19 1.93 16 27 H 0.04 1.51 7.90 -2.39 -0.02 1.49 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.74 8.07 -2.39 -0.02 2.72 16 31 H 0.08 2.43 7.80 -2.39 -0.02 2.41 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.02 1.11 6.77 -2.39 -0.02 1.10 16 34 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.42 11.91 8.65 -96.75 -0.84 11.08 16 36 H 0.05 2.16 7.62 -2.39 -0.02 2.14 16 37 H 0.08 3.28 5.54 -2.38 -0.01 3.26 16 38 H 0.13 3.20 8.04 -2.91 -0.02 3.18 16 39 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.14 2.15 7.05 -2.91 -0.02 2.13 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.04 0.65 7.12 -2.39 -0.02 0.63 16 44 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.05 1.35 8.12 -2.39 -0.02 1.33 16 47 H 0.04 0.82 7.47 -2.39 -0.02 0.80 16 Total: -1.00 -68.96 394.88 -1.62 -70.58 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.13 Total: 28.98 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 6.23 Total: -10.71 kcal Atomic # 7 Polarization: -145.65 SS G_CDS: -5.42 Total: -151.07 kcal Atomic # 8 Polarization: -91.41 SS G_CDS: -4.24 Total: -95.65 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 114.18 SS G_CDS: -0.34 Total: 113.84 kcal Total: -68.96 -1.62 -70.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336916387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.987 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds