Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47400 * 2 1 4 4 C 1.37101 * 120.00196 * 95.11630 * 3 2 1 5 5 H 1.07994 * 120.00586 * 213.89187 * 4 3 2 6 6 C 1.38949 * 119.99571 * 33.89720 * 4 3 2 7 7 N 1.31411 * 120.00342 * 22.41453 * 6 4 3 8 8 Si 1.86801 * 119.99642 * 202.69201 * 6 4 3 9 9 H 1.48507 * 109.46887 * 269.71967 * 8 6 4 10 10 H 1.48498 * 109.47476 * 29.72021 * 8 6 4 11 11 H 1.48506 * 109.47256 * 149.72366 * 8 6 4 12 12 C 1.34778 * 120.00152 * 275.12405 * 3 2 1 13 13 O 1.21294 * 120.00292 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99888 * 359.97438 * 12 3 2 15 15 C 1.53000 * 109.47359 * 179.97438 * 14 12 3 16 16 C 1.53002 * 109.47303 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46777 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.46777 * 180.02562 * 17 16 15 19 19 H 1.09002 * 111.08269 * 58.03899 * 18 17 16 20 20 S 1.84863 * 111.23895 * 293.54355 * 18 17 16 21 21 C 1.84553 * 96.96893 * 217.86764 * 20 18 17 22 22 C 1.50196 * 102.55622 * 353.40545 * 21 20 18 23 23 H 1.09000 * 107.27963 * 282.50487 * 22 21 20 24 24 N 1.43261 * 127.26410 * 153.90607 * 22 21 20 25 25 C 1.36850 * 104.99198 * 205.13967 * 24 22 21 26 26 O 1.21590 * 123.68158 * 193.56848 * 25 24 22 27 27 N 1.36685 * 112.63713 * 13.54420 * 25 24 22 28 28 C 1.44331 * 104.90095 * 15.21885 * 27 25 24 29 29 H 1.09001 * 110.43140 * 81.14044 * 28 27 25 30 30 H 1.09000 * 109.46700 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46890 * 299.99839 * 1 2 3 32 32 H 1.08991 * 109.47262 * 60.00045 * 1 2 3 33 33 H 1.09007 * 109.47311 * 240.00049 * 2 1 3 34 34 H 1.08999 * 109.47479 * 120.00577 * 2 1 3 35 35 H 0.96997 * 119.99959 * 180.02562 * 7 6 4 36 36 H 1.08996 * 109.47827 * 300.00612 * 14 12 3 37 37 H 1.09002 * 109.47059 * 60.00170 * 14 12 3 38 38 H 1.09004 * 109.47396 * 300.00409 * 15 14 12 39 39 H 1.09002 * 109.46881 * 60.00080 * 15 14 12 40 40 H 1.08998 * 109.46957 * 299.99996 * 16 15 14 41 41 H 1.09002 * 109.47228 * 60.00119 * 16 15 14 42 42 H 1.08998 * 109.47047 * 299.99540 * 17 16 15 43 43 H 1.08995 * 109.47595 * 60.00547 * 17 16 15 44 44 H 1.09002 * 110.79043 * 111.66997 * 21 20 18 45 45 H 1.09000 * 110.78993 * 234.94745 * 21 20 18 46 46 H 0.97003 * 127.49739 * 25.10193 * 24 22 21 47 47 H 0.96998 * 127.27398 * 194.43504 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3467 1.9922 1.1826 5 1 2.1779 3.0514 1.3083 6 6 2.8970 1.2485 2.2194 7 7 3.5046 0.1120 1.9624 8 14 2.7660 1.8606 3.9794 9 1 3.9452 2.7049 4.2988 10 1 1.5262 2.6632 4.1335 11 1 2.7228 0.7001 4.9051 12 6 2.1448 2.0513 -1.1625 13 8 2.5487 3.1950 -1.1625 14 6 1.7842 1.3795 -2.4625 15 6 2.0170 2.3518 -3.6207 16 6 1.6504 1.6700 -4.9404 17 6 1.8838 2.6421 -6.0986 18 6 1.5165 1.9605 -7.4183 19 1 0.4795 1.6250 -7.4110 20 16 2.6691 0.5651 -7.7948 21 6 2.7619 0.8369 -9.6179 22 6 1.7409 1.9160 -9.8395 23 1 0.7590 1.4439 -9.8084 24 7 1.7125 2.8787 -10.9000 25 6 1.0068 3.9381 -10.3977 26 8 0.5733 4.8448 -11.0820 27 7 0.8421 3.8654 -9.0427 28 6 1.7938 2.8723 -8.6059 29 1 2.7876 3.3111 -8.5162 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8884 -0.4072 2.6863 36 1 2.4064 0.4951 -2.5993 37 1 0.7348 1.0856 -2.4407 38 1 1.3945 3.2360 -3.4837 39 1 3.0663 2.6461 -3.6426 40 1 2.2727 0.7857 -5.0777 41 1 0.6010 1.3759 -4.9182 42 1 1.2618 3.5266 -5.9616 43 1 2.9332 2.9356 -6.1208 44 1 3.7554 1.1788 -9.9080 45 1 2.4935 -0.0707 -10.1585 46 1 2.1080 2.7974 -11.7820 47 1 0.2271 4.3804 -8.4973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346522337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = -44.369554 kcal Electronic energy + Delta-G solvation = -27082.807399 eV Core-core repulsion = 23199.414998 eV Total energy + Delta-G solvation = -3883.392401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02228 -38.62983 -37.81940 -36.05096 -34.93316 -33.77687 -33.04349 -32.03500 -31.01604 -29.42044 -27.99564 -25.47482 -24.23008 -22.66293 -22.33975 -22.07584 -21.72675 -20.87192 -18.60881 -18.27120 -17.71176 -16.86320 -16.74811 -16.28253 -15.86449 -15.72413 -15.56161 -15.01171 -14.85268 -14.65748 -14.25752 -14.15753 -13.86863 -13.28278 -13.13859 -12.85241 -12.76587 -12.57108 -12.33802 -12.09334 -11.93448 -11.73436 -11.53543 -11.20563 -11.08496 -11.00635 -10.94484 -10.78960 -10.74981 -10.54312 -10.34734 -10.32356 -10.17525 -10.00646 -9.91773 -9.32987 -8.91361 -8.32427 -8.18207 -7.45068 -6.30738 -3.90783 1.06817 1.54709 2.34826 2.38769 3.17843 3.18565 3.26622 3.32378 3.56873 3.91956 3.97195 4.17188 4.20033 4.36373 4.38294 4.65443 4.85705 4.91733 4.95701 5.04312 5.07431 5.08775 5.20439 5.31276 5.48435 5.59889 5.73053 5.81787 5.89449 5.97913 6.06951 6.13369 6.20495 6.26182 6.41670 6.46415 6.54448 6.62637 6.63422 6.73451 6.79023 6.91512 7.29626 7.62044 8.02101 8.28439 8.55372 9.23395 9.47174 10.07594 10.73117 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.001892 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.143341 B =14793.026864 C =15263.747879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.443 5.443 4 C -0.306 4.306 5 H 0.090 0.910 6 C 0.033 3.967 7 N -0.870 5.870 8 Si 0.915 3.085 9 H -0.277 1.277 10 H -0.270 1.270 11 H -0.283 1.283 12 C 0.456 3.544 13 O -0.587 6.587 14 C -0.133 4.133 15 C -0.097 4.097 16 C -0.119 4.119 17 C -0.102 4.102 18 C -0.037 4.037 19 H 0.111 0.889 20 S -0.231 6.231 21 C -0.074 4.074 22 C 0.099 3.901 23 H 0.075 0.925 24 N -0.728 5.728 25 C 0.711 3.289 26 O -0.558 6.558 27 N -0.729 5.729 28 C 0.103 3.897 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.267 0.733 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.431 0.569 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -3.272 -22.604 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.162 5.162 4 C -0.434 4.434 5 H 0.108 0.892 6 C -0.170 4.170 7 N -0.509 5.509 8 Si 0.742 3.258 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.244 3.756 13 O -0.471 6.471 14 C -0.174 4.174 15 C -0.135 4.135 16 C -0.157 4.157 17 C -0.140 4.140 18 C -0.166 4.166 19 H 0.129 0.871 20 S -0.005 6.005 21 C -0.223 4.223 22 C -0.011 4.011 23 H 0.093 0.907 24 N -0.394 5.394 25 C 0.411 3.589 26 O -0.431 6.431 27 N -0.395 5.395 28 C -0.006 4.006 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.130 0.870 46 H 0.274 0.726 47 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -3.895 -3.215 -22.136 22.705 hybrid contribution -0.584 0.814 0.088 1.005 sum -4.479 -2.401 -22.048 22.626 Atomic orbital electron populations 1.22204 0.98350 1.00234 1.01419 1.21569 0.91625 0.85611 1.04048 1.43556 1.55814 1.11842 1.05028 1.19427 1.39618 0.95389 0.88954 0.89186 1.25316 0.94663 0.96549 1.00467 1.69925 1.32742 1.15426 1.32802 0.86119 0.79029 0.78322 0.82342 1.20342 1.19466 1.20842 1.20373 0.82269 0.87918 0.85012 1.90501 1.50631 1.18933 1.87026 1.21614 1.02005 0.99458 0.94282 1.21244 1.02631 0.98042 0.91625 1.21657 1.01684 0.98310 0.94061 1.21598 1.03182 0.98568 0.90685 1.23806 1.01505 0.94140 0.97154 0.87117 1.88611 1.63265 1.43588 1.05022 1.23259 1.02272 1.00600 0.96174 1.21486 1.00588 0.91287 0.87713 0.90690 1.44825 1.61542 1.16717 1.16301 1.17252 0.77944 0.81581 0.82114 1.90990 1.53971 1.36420 1.61765 1.45093 1.43294 1.44922 1.06234 1.22635 0.94591 0.89678 0.93693 0.88570 0.93181 0.92538 0.93939 0.93411 0.87031 0.92310 0.90413 0.90718 0.91658 0.91414 0.91473 0.91921 0.90242 0.90173 0.87802 0.87040 0.72604 0.72189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.15 37.16 0.38 -2.54 16 2 C 0.10 2.06 5.44 -4.05 -0.02 2.04 16 3 N -0.44 -11.21 2.56 -114.82 -0.29 -11.50 16 4 C -0.31 -8.52 8.97 -14.93 -0.13 -8.65 16 5 H 0.09 2.64 7.71 -52.49 -0.40 2.23 16 6 C 0.03 0.89 4.92 -17.47 -0.09 0.80 16 7 N -0.87 -23.44 11.34 55.50 0.63 -22.81 16 8 Si 0.92 20.60 29.61 -169.99 -5.03 15.56 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.46 11.02 7.59 -10.99 -0.08 10.94 16 13 O -0.59 -16.26 15.81 5.55 0.09 -16.17 16 14 C -0.13 -2.35 4.31 -27.88 -0.12 -2.47 16 15 C -0.10 -1.47 4.50 -26.73 -0.12 -1.59 16 16 C -0.12 -1.28 5.08 -26.73 -0.14 -1.42 16 17 C -0.10 -0.85 4.86 -26.73 -0.13 -0.98 16 18 C -0.04 -0.25 3.07 -27.11 -0.08 -0.33 16 19 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 20 S -0.23 -1.78 21.88 -107.50 -2.35 -4.13 16 21 C -0.07 -0.35 7.28 35.76 0.26 -0.09 16 22 C 0.10 0.54 3.31 -69.34 -0.23 0.31 16 23 H 0.08 0.44 8.00 -51.93 -0.42 0.03 16 24 N -0.73 -4.63 6.55 -59.28 -0.39 -5.02 16 25 C 0.71 6.81 8.77 -83.28 -0.73 6.08 16 26 O -0.56 -7.71 18.05 5.29 0.10 -7.61 16 27 N -0.73 -5.28 6.58 -57.63 -0.38 -5.66 16 28 C 0.10 0.66 2.93 -67.76 -0.20 0.46 16 29 H 0.10 0.68 8.12 -51.93 -0.42 0.25 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.70 6.61 -51.93 -0.34 0.35 16 33 H 0.05 0.93 6.65 -51.92 -0.35 0.59 16 34 H 0.11 2.67 5.35 -51.93 -0.28 2.40 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.08 1.32 7.41 -51.93 -0.38 0.93 16 37 H 0.07 1.18 6.55 -51.93 -0.34 0.84 16 38 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 40 H 0.07 0.75 7.35 -51.93 -0.38 0.37 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.43 1.93 8.96 -40.82 -0.37 1.56 16 47 H 0.43 2.63 8.96 -40.82 -0.37 2.26 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -34.17 386.18 -10.65 -44.83 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.40 Total: 4.14 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.44 Total: 2.56 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.43 Total: -44.99 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.18 Total: -23.79 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.35 Total: -4.13 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.17 -10.65 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346522337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.458 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds