Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47400 * 2 1 4 4 C 1.37101 * 120.00196 * 95.11630 * 3 2 1 5 5 H 1.07994 * 120.00586 * 213.89187 * 4 3 2 6 6 C 1.38949 * 119.99571 * 33.89720 * 4 3 2 7 7 N 1.31411 * 120.00342 * 22.41453 * 6 4 3 8 8 Si 1.86801 * 119.99642 * 202.69201 * 6 4 3 9 9 H 1.48507 * 109.46887 * 269.71967 * 8 6 4 10 10 H 1.48498 * 109.47476 * 29.72021 * 8 6 4 11 11 H 1.48506 * 109.47256 * 149.72366 * 8 6 4 12 12 C 1.34778 * 120.00152 * 275.12405 * 3 2 1 13 13 O 1.21294 * 120.00292 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99888 * 359.97438 * 12 3 2 15 15 C 1.53000 * 109.47359 * 179.97438 * 14 12 3 16 16 C 1.53002 * 109.47303 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46777 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.46777 * 180.02562 * 17 16 15 19 19 H 1.09002 * 111.08269 * 58.03899 * 18 17 16 20 20 S 1.84863 * 111.23895 * 293.54355 * 18 17 16 21 21 C 1.84553 * 96.96893 * 217.86764 * 20 18 17 22 22 C 1.50196 * 102.55622 * 353.40545 * 21 20 18 23 23 H 1.09000 * 107.27963 * 282.50487 * 22 21 20 24 24 N 1.43261 * 127.26410 * 153.90607 * 22 21 20 25 25 C 1.36850 * 104.99198 * 205.13967 * 24 22 21 26 26 O 1.21590 * 123.68158 * 193.56848 * 25 24 22 27 27 N 1.36685 * 112.63713 * 13.54420 * 25 24 22 28 28 C 1.44331 * 104.90095 * 15.21885 * 27 25 24 29 29 H 1.09001 * 110.43140 * 81.14044 * 28 27 25 30 30 H 1.09000 * 109.46700 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46890 * 299.99839 * 1 2 3 32 32 H 1.08991 * 109.47262 * 60.00045 * 1 2 3 33 33 H 1.09007 * 109.47311 * 240.00049 * 2 1 3 34 34 H 1.08999 * 109.47479 * 120.00577 * 2 1 3 35 35 H 0.96997 * 119.99959 * 180.02562 * 7 6 4 36 36 H 1.08996 * 109.47827 * 300.00612 * 14 12 3 37 37 H 1.09002 * 109.47059 * 60.00170 * 14 12 3 38 38 H 1.09004 * 109.47396 * 300.00409 * 15 14 12 39 39 H 1.09002 * 109.46881 * 60.00080 * 15 14 12 40 40 H 1.08998 * 109.46957 * 299.99996 * 16 15 14 41 41 H 1.09002 * 109.47228 * 60.00119 * 16 15 14 42 42 H 1.08998 * 109.47047 * 299.99540 * 17 16 15 43 43 H 1.08995 * 109.47595 * 60.00547 * 17 16 15 44 44 H 1.09002 * 110.79043 * 111.66997 * 21 20 18 45 45 H 1.09000 * 110.78993 * 234.94745 * 21 20 18 46 46 H 0.97003 * 127.49739 * 25.10193 * 24 22 21 47 47 H 0.96998 * 127.27398 * 194.43504 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3467 1.9922 1.1826 5 1 2.1779 3.0514 1.3083 6 6 2.8970 1.2485 2.2194 7 7 3.5046 0.1120 1.9624 8 14 2.7660 1.8606 3.9794 9 1 3.9452 2.7049 4.2988 10 1 1.5262 2.6632 4.1335 11 1 2.7228 0.7001 4.9051 12 6 2.1448 2.0513 -1.1625 13 8 2.5487 3.1950 -1.1625 14 6 1.7842 1.3795 -2.4625 15 6 2.0170 2.3518 -3.6207 16 6 1.6504 1.6700 -4.9404 17 6 1.8838 2.6421 -6.0986 18 6 1.5165 1.9605 -7.4183 19 1 0.4795 1.6250 -7.4110 20 16 2.6691 0.5651 -7.7948 21 6 2.7619 0.8369 -9.6179 22 6 1.7409 1.9160 -9.8395 23 1 0.7590 1.4439 -9.8084 24 7 1.7125 2.8787 -10.9000 25 6 1.0068 3.9381 -10.3977 26 8 0.5733 4.8448 -11.0820 27 7 0.8421 3.8654 -9.0427 28 6 1.7938 2.8723 -8.6059 29 1 2.7876 3.3111 -8.5162 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8884 -0.4072 2.6863 36 1 2.4064 0.4951 -2.5993 37 1 0.7348 1.0856 -2.4407 38 1 1.3945 3.2360 -3.4837 39 1 3.0663 2.6461 -3.6426 40 1 2.2727 0.7857 -5.0777 41 1 0.6010 1.3759 -4.9182 42 1 1.2618 3.5266 -5.9616 43 1 2.9332 2.9356 -6.1208 44 1 3.7554 1.1788 -9.9080 45 1 2.4935 -0.0707 -10.1585 46 1 2.1080 2.7974 -11.7820 47 1 0.2271 4.3804 -8.4973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346522337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = -68.980708 kcal Electronic energy + Delta-G solvation = -27083.874619 eV Core-core repulsion = 23199.414998 eV Total energy + Delta-G solvation = -3884.459621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.62666 -40.45715 -38.59569 -37.19585 -36.61108 -34.52088 -34.06403 -33.67441 -31.91857 -31.12314 -28.99023 -26.99822 -25.37418 -23.94906 -23.28019 -22.97083 -22.32873 -21.86700 -20.37793 -18.86118 -18.70118 -18.35790 -17.63665 -17.49746 -16.99153 -16.81620 -16.55123 -16.29349 -15.98533 -15.74321 -15.46417 -15.11553 -14.89293 -14.51536 -14.50438 -14.15350 -13.90458 -13.59674 -13.42371 -13.17564 -13.15672 -12.90052 -12.76328 -12.68132 -12.59553 -12.27613 -12.12373 -12.01930 -11.93556 -11.85812 -11.75610 -11.66972 -11.46032 -11.01484 -10.86807 -10.61671 -10.26964 -9.86715 -9.43273 -8.75202 -8.32965 -6.01410 0.55555 1.03569 1.36669 1.41037 1.53755 1.65147 1.81212 2.10078 2.31196 2.64853 3.03609 3.04411 3.14579 3.40312 3.69832 3.81353 3.89611 4.02034 4.12002 4.16787 4.19155 4.34659 4.42543 4.47981 4.56870 4.63602 4.65555 4.69106 4.77505 4.80066 4.84702 4.91254 5.00541 5.04100 5.10914 5.26137 5.35250 5.43648 5.48133 5.55050 5.61724 5.86922 5.98686 6.23002 6.31899 6.57479 7.21988 7.37941 7.54049 8.13566 8.69136 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.001892 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.143341 B =14793.026864 C =15263.747879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.458 5.458 4 C -0.342 4.342 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.888 5.888 8 Si 0.978 3.022 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.266 1.266 12 C 0.438 3.562 13 O -0.635 6.635 14 C -0.120 4.120 15 C -0.091 4.091 16 C -0.106 4.106 17 C -0.099 4.099 18 C -0.020 4.020 19 H 0.124 0.876 20 S -0.276 6.276 21 C -0.056 4.056 22 C 0.107 3.893 23 H 0.079 0.921 24 N -0.715 5.715 25 C 0.705 3.295 26 O -0.606 6.606 27 N -0.721 5.721 28 C 0.104 3.896 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.273 0.727 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.440 0.560 47 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 -5.121 -23.626 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.176 5.176 4 C -0.470 4.470 5 H 0.078 0.922 6 C -0.201 4.201 7 N -0.526 5.526 8 Si 0.802 3.198 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.190 1.190 12 C 0.229 3.771 13 O -0.523 6.523 14 C -0.160 4.160 15 C -0.129 4.129 16 C -0.144 4.144 17 C -0.138 4.138 18 C -0.150 4.150 19 H 0.142 0.858 20 S -0.050 6.050 21 C -0.205 4.205 22 C -0.002 4.002 23 H 0.097 0.903 24 N -0.381 5.381 25 C 0.405 3.595 26 O -0.484 6.484 27 N -0.387 5.387 28 C -0.005 4.005 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.150 0.850 46 H 0.285 0.715 47 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -4.837 -5.136 -23.150 24.202 hybrid contribution -0.215 1.367 0.418 1.446 sum -5.053 -3.768 -22.732 23.590 Atomic orbital electron populations 1.22093 0.95287 1.02443 1.01271 1.21685 0.94123 0.83475 1.03713 1.43879 1.55855 1.13146 1.04761 1.19356 1.41761 0.94722 0.91182 0.92166 1.26047 0.93686 0.96659 1.03745 1.69988 1.32472 1.16028 1.34124 0.85182 0.78708 0.78235 0.77683 1.20517 1.19314 1.19040 1.21514 0.81227 0.87569 0.86810 1.90456 1.52655 1.21196 1.88003 1.21595 1.03604 0.99604 0.91207 1.21185 1.01019 0.97563 0.93149 1.21522 1.02587 0.98159 0.92123 1.21524 1.02923 0.98494 0.90840 1.23636 1.01782 0.93490 0.96053 0.85833 1.88799 1.63902 1.44062 1.08239 1.23271 1.02619 1.01045 0.93529 1.21470 1.01214 0.90916 0.86588 0.90288 1.44733 1.60556 1.15912 1.16871 1.17513 0.77862 0.81596 0.82528 1.90956 1.56106 1.38394 1.62921 1.45064 1.43168 1.44897 1.05574 1.22622 0.94060 0.89641 0.94199 0.88997 0.89705 0.94360 0.92413 0.91451 0.89521 0.91698 0.89270 0.88045 0.92726 0.93809 0.91614 0.90130 0.89455 0.91093 0.86753 0.85037 0.71504 0.71634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 10.15 71.98 0.73 -4.40 16 2 C 0.09 3.95 5.44 86.38 0.47 4.42 16 3 N -0.46 -23.54 2.56 -635.55 -1.62 -25.17 16 4 C -0.34 -19.67 8.97 84.04 0.75 -18.92 16 5 H 0.06 3.73 7.71 -2.91 -0.02 3.71 16 6 C 0.00 0.04 4.92 84.93 0.42 0.46 16 7 N -0.89 -48.00 11.34 21.66 0.25 -47.75 16 8 Si 0.98 42.58 29.61 68.60 2.03 44.61 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 12 C 0.44 21.61 7.59 87.66 0.67 22.27 16 13 O -0.64 -36.76 15.81 -3.07 -0.05 -36.81 16 14 C -0.12 -4.12 4.31 29.85 0.13 -3.99 16 15 C -0.09 -2.70 4.50 30.60 0.14 -2.56 16 16 C -0.11 -2.07 5.08 30.60 0.16 -1.91 16 17 C -0.10 -1.51 4.86 30.60 0.15 -1.36 16 18 C -0.02 -0.23 3.07 30.35 0.09 -0.14 16 19 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 20 S -0.28 -3.66 21.88 -56.49 -1.24 -4.90 16 21 C -0.06 -0.36 7.28 71.08 0.52 0.16 16 22 C 0.11 0.90 3.31 45.79 0.15 1.05 16 23 H 0.08 0.68 8.00 -2.39 -0.02 0.66 16 24 N -0.71 -7.75 6.55 -458.53 -3.00 -10.75 16 25 C 0.70 12.79 8.77 177.78 1.56 14.35 16 26 O -0.61 -16.72 18.05 -4.00 -0.07 -16.80 16 27 N -0.72 -9.44 6.58 -453.39 -2.98 -12.42 16 28 C 0.10 1.13 2.93 46.25 0.14 1.26 16 29 H 0.09 1.14 8.12 -2.39 -0.02 1.12 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.74 6.61 -2.39 -0.02 1.73 16 33 H 0.07 2.53 6.65 -2.38 -0.02 2.51 16 34 H 0.09 4.14 5.35 -2.39 -0.01 4.13 16 35 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 36 H 0.09 2.87 7.41 -2.39 -0.02 2.85 16 37 H 0.10 2.93 6.55 -2.39 -0.02 2.92 16 38 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 39 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.07 1.34 7.35 -2.39 -0.02 1.32 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.44 3.10 8.96 -92.71 -0.83 2.27 16 47 H 0.44 4.78 8.96 -92.71 -0.83 3.95 16 Total: -1.00 -77.73 386.18 -1.29 -79.02 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.66 Total: 20.27 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.07 Total: 10.69 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -7.36 Total: -96.09 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.12 Total: -53.60 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.24 Total: -4.90 kcal Total: -77.73 -1.29 -79.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346522337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.039 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds