Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47255 * 2 1 4 4 C 1.50699 * 109.47348 * 119.99894 * 2 1 3 5 5 H 1.08004 * 119.99769 * 120.00183 * 4 2 1 6 6 C 1.37875 * 120.00186 * 300.00576 * 4 2 1 7 7 N 1.31508 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00207 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47111 * 59.99428 * 8 6 4 10 10 H 1.48496 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47238 * 299.99958 * 8 6 4 12 12 N 1.46898 * 109.47212 * 240.00343 * 2 1 3 13 13 C 1.46901 * 111.00053 * 183.95510 * 12 2 1 14 14 C 1.46899 * 111.00101 * 59.99712 * 12 2 1 15 15 C 1.50706 * 109.47005 * 189.99956 * 14 12 2 16 16 C 1.39870 * 126.03571 * 90.02521 * 15 14 12 17 17 N 1.30836 * 108.20019 * 179.71573 * 16 15 14 18 18 N 1.40090 * 108.20534 * 0.24683 * 17 16 15 19 19 C 1.46502 * 126.03499 * 179.97438 * 18 17 16 20 20 C 1.53003 * 108.89343 * 226.33887 * 19 18 17 21 21 C 1.52972 * 108.93134 * 107.78693 * 19 18 17 22 22 C 1.55099 * 108.66676 * 209.33230 * 21 19 18 23 23 S 1.83848 * 101.18723 * 41.87092 * 22 21 19 24 24 O 1.42103 * 109.61320 * 211.05134 * 23 22 21 25 25 O 1.42103 * 109.77988 * 77.14269 * 23 22 21 26 26 C 1.53617 * 108.93486 * 345.01954 * 19 18 17 27 27 C 1.34942 * 107.92509 * 359.97438 * 18 17 16 28 28 H 1.08997 * 109.47463 * 299.99800 * 1 2 3 29 29 H 1.08998 * 109.47445 * 59.99764 * 1 2 3 30 30 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00271 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46917 * 296.04092 * 13 12 2 33 33 H 1.08998 * 109.47418 * 56.04594 * 13 12 2 34 34 H 1.09005 * 109.47256 * 176.04807 * 13 12 2 35 35 H 1.09002 * 109.47243 * 70.00339 * 14 12 2 36 36 H 1.08996 * 109.47083 * 309.99731 * 14 12 2 37 37 H 1.08002 * 125.90382 * 359.97438 * 16 15 14 38 38 H 1.08999 * 109.47381 * 60.70455 * 20 19 18 39 39 H 1.09005 * 109.46950 * 180.70335 * 20 19 18 40 40 H 1.08994 * 109.47036 * 300.69596 * 20 19 18 41 41 H 1.09007 * 109.65186 * 329.17415 * 21 19 18 42 42 H 1.08997 * 109.65207 * 89.49305 * 21 19 18 43 43 H 1.08998 * 111.07744 * 283.89562 * 22 21 19 44 44 H 1.08991 * 111.07811 * 159.85096 * 22 21 19 45 45 H 1.08990 * 110.27304 * 242.07315 * 26 19 18 46 46 H 1.09004 * 110.26883 * 4.04907 * 26 19 18 47 47 H 1.08002 * 126.12737 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8259 -2.5203 4.0077 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5486 -0.0263 -2.4211 15 6 1.8580 -0.8910 -3.6159 16 6 1.0229 -1.8726 -4.1596 17 7 1.6318 -2.4026 -5.1893 18 7 2.8777 -1.7779 -5.3302 19 6 3.8783 -2.0728 -6.3589 20 6 5.2510 -2.1949 -5.6943 21 6 3.9158 -0.9172 -7.3605 22 6 4.3381 -1.4740 -8.7452 23 16 3.3684 -3.0345 -8.8130 24 8 4.0788 -4.0049 -9.5699 25 8 2.0118 -2.7447 -9.1209 26 6 3.5271 -3.4109 -7.0267 27 6 2.9935 -0.8566 -4.3511 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7094 1.1616 3.4844 32 1 3.9192 0.2044 -1.2300 33 1 3.8070 -1.2915 -0.2719 34 1 3.8164 -1.3720 -2.0501 35 1 2.0518 0.9347 -2.5280 36 1 0.4722 0.1324 -2.3564 37 1 0.0429 -2.1433 -3.7951 38 1 5.2326 -3.0084 -4.9691 39 1 6.0051 -2.4021 -6.4536 40 1 5.4934 -1.2611 -5.1870 41 1 2.9274 -0.4634 -7.4338 42 1 4.6369 -0.1694 -7.0307 43 1 5.4087 -1.6761 -8.7765 44 1 4.0454 -0.7954 -9.5463 45 1 4.3246 -4.1355 -6.8629 46 1 2.5843 -3.7926 -6.6347 47 1 3.8392 -0.2054 -4.1862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353417345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = 34.706123 kcal Electronic energy + Delta-G solvation = -28308.572765 eV Core-core repulsion = 24428.609342 eV Total energy + Delta-G solvation = -3879.963423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42209 -38.17888 -37.42200 -36.77613 -36.40297 -32.98679 -32.05248 -30.68771 -30.21186 -28.91351 -28.27793 -26.62963 -25.15010 -24.52612 -23.07827 -22.21257 -20.17530 -19.77604 -19.34935 -19.12457 -17.66867 -16.91828 -16.57886 -16.23761 -16.03269 -15.31228 -14.93028 -14.81176 -14.69553 -14.08875 -14.05025 -13.80436 -13.61681 -13.45524 -13.14737 -12.93799 -12.73141 -12.54971 -12.53853 -12.43903 -12.41431 -12.21827 -12.01250 -11.77223 -11.70944 -11.20070 -11.06078 -10.98088 -10.77192 -10.72758 -10.52903 -10.38883 -10.12142 -10.00887 -9.82946 -9.30624 -8.87707 -8.45405 -8.19654 -7.10916 -6.00521 -4.04864 -0.45061 1.87976 2.01447 2.29051 3.02160 3.06175 3.31567 3.36241 3.39244 3.52751 3.63910 3.82279 3.95353 4.18340 4.29227 4.41759 4.74376 4.85910 4.87954 4.93996 5.03510 5.06133 5.09533 5.22761 5.25708 5.34863 5.48009 5.56191 5.60639 5.77626 6.06869 6.16991 6.31872 6.33668 6.50285 6.78053 6.80885 6.87943 7.05932 7.07962 7.17878 7.54519 7.75235 7.81459 7.83957 8.24146 8.35111 8.63296 9.01691 9.60049 11.06119 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.002302 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.803163 B =12158.826789 C =12451.251556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.213 3.787 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.532 5.532 13 C 0.040 3.960 14 C 0.121 3.879 15 C -0.199 4.199 16 C 0.074 3.926 17 N -0.306 5.306 18 N -0.378 5.378 19 C 0.209 3.791 20 C -0.165 4.165 21 C -0.137 4.137 22 C -0.577 4.577 23 S 2.385 3.615 24 O -0.935 6.935 25 O -0.919 6.919 26 C -0.595 4.595 27 C 0.052 3.948 28 H 0.084 0.916 29 H 0.009 0.991 30 H 0.035 0.965 31 H 0.260 0.740 32 H 0.006 0.994 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.024 0.976 36 H 0.083 0.917 37 H 0.184 0.816 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.148 0.852 46 H 0.167 0.833 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.031 -2.725 -21.848 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.256 5.256 13 C -0.109 4.109 14 C -0.008 4.008 15 C -0.211 4.211 16 C -0.113 4.113 17 N -0.126 5.126 18 N -0.162 5.162 19 C 0.124 3.876 20 C -0.223 4.223 21 C -0.177 4.177 22 C -0.707 4.707 23 S 2.567 3.433 24 O -0.932 6.932 25 O -0.917 6.917 26 C -0.724 4.724 27 C -0.092 4.092 28 H 0.103 0.897 29 H 0.028 0.972 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.201 0.799 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.166 0.834 46 H 0.185 0.815 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.311 -4.459 -23.469 25.293 hybrid contribution 1.157 1.442 2.355 2.994 sum 9.468 -3.017 -21.115 23.336 Atomic orbital electron populations 1.21856 0.97728 0.99699 0.99872 1.19231 0.92334 0.91886 0.85870 0.98568 1.21122 1.30987 1.12217 0.89799 0.91999 1.24920 0.95248 0.95087 0.98964 1.69877 1.36930 1.23015 1.23476 0.86605 0.79007 0.79819 0.82207 1.20439 1.21386 1.20234 1.62109 1.09083 1.52706 1.01752 1.22191 0.89124 0.98301 1.01286 1.20433 1.00996 0.92189 0.87147 1.20230 0.95093 1.04125 1.01619 1.23805 1.00228 0.94578 0.92640 1.77114 0.92630 1.21331 1.21509 1.48498 1.13834 1.30156 1.23689 1.20415 0.88065 0.91496 0.87647 1.22467 0.93235 1.04558 1.02064 1.22607 1.05742 0.98557 0.90758 1.30570 1.14705 1.21229 1.04167 1.09317 0.76858 0.78552 0.78536 1.93626 1.74535 1.57768 1.67282 1.93672 1.31401 1.84361 1.82216 1.30774 1.14240 1.03643 1.23751 1.22157 1.00152 0.95725 0.91198 0.89747 0.97172 0.94626 0.92960 0.97548 0.90777 0.94023 0.95751 0.89906 0.79924 0.90404 0.89805 0.90567 0.88224 0.87284 0.84019 0.83906 0.83382 0.81495 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.76 37.16 0.33 -2.85 16 2 C 0.21 5.23 2.06 -68.87 -0.14 5.09 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 4 C -0.50 -13.51 7.88 -34.44 -0.27 -13.78 16 5 H 0.06 1.66 6.41 -52.48 -0.34 1.33 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.53 -11.05 4.61 -237.73 -1.10 -12.14 16 13 C 0.04 0.75 9.00 60.07 0.54 1.29 16 14 C 0.12 2.11 5.26 -4.97 -0.03 2.08 16 15 C -0.20 -2.98 4.99 -105.05 -0.52 -3.50 16 16 C 0.07 1.09 11.96 -17.37 -0.21 0.88 16 17 N -0.31 -4.34 10.80 30.62 0.33 -4.01 16 18 N -0.38 -4.38 3.34 -48.37 -0.16 -4.54 16 19 C 0.21 1.62 1.08 -131.51 -0.14 1.48 16 20 C -0.16 -0.96 7.76 37.16 0.29 -0.67 16 21 C -0.14 -0.79 5.36 -25.64 -0.14 -0.93 16 22 C -0.58 -2.35 7.46 38.27 0.29 -2.07 16 23 S 2.39 18.52 6.05 -107.50 -0.65 17.87 16 24 O -0.94 -9.82 18.16 -57.69 -1.05 -10.87 16 25 O -0.92 -11.11 18.16 -57.69 -1.05 -12.16 16 26 C -0.60 -4.49 6.61 37.48 0.25 -4.24 16 27 C 0.05 0.65 9.03 -17.23 -0.16 0.49 16 28 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 29 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.07 1.54 6.10 -51.93 -0.32 1.22 16 34 H 0.04 0.69 6.31 -51.93 -0.33 0.36 16 35 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.08 1.46 5.83 -51.93 -0.30 1.16 16 37 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.40 7.26 -51.93 -0.38 0.03 16 41 H 0.10 0.72 8.04 -51.93 -0.42 0.30 16 42 H 0.11 0.42 7.76 -51.93 -0.40 0.01 16 43 H 0.14 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.15 0.74 7.63 -51.93 -0.40 0.34 16 46 H 0.17 1.62 6.44 -51.93 -0.33 1.29 16 47 H 0.17 1.65 7.55 -52.49 -0.40 1.25 16 LS Contribution 378.91 15.07 5.71 5.71 Total: -1.00 -35.69 378.91 -9.55 -45.24 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.18 Total: -1.46 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.01 Total: -15.21 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.30 Total: -45.20 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -2.10 Total: -23.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 18.52 SS G_CDS: -0.65 Total: 17.87 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.69 -9.55 -45.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.947 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds