Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47491 * 2 1 4 4 C 1.50698 * 109.47693 * 240.00000 * 2 1 3 5 5 H 1.08003 * 120.00248 * 275.01180 * 4 2 1 6 6 C 1.37879 * 120.00061 * 95.00170 * 4 2 1 7 7 N 1.31514 * 120.00065 * 184.92370 * 6 4 2 8 8 Si 1.86799 * 120.00086 * 4.91820 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.83083 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.83377 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.83552 * 8 6 4 12 12 N 1.46500 * 109.46835 * 120.00006 * 2 1 3 13 13 C 1.34781 * 120.00238 * 274.99456 * 12 2 1 14 14 O 1.21281 * 119.99451 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00167 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47024 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47112 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47112 * 180.02562 * 17 16 15 19 19 C 1.53010 * 109.46889 * 179.97438 * 18 17 16 20 20 H 1.09003 * 110.67531 * 54.30148 * 19 18 17 21 21 S 1.83917 * 110.76354 * 291.04970 * 19 18 17 22 22 C 1.83907 * 94.80304 * 207.01401 * 21 19 18 23 23 C 1.54132 * 102.71675 * 34.68914 * 22 21 19 24 24 H 1.08997 * 110.25287 * 211.55927 * 23 22 21 25 25 N 1.47128 * 109.22209 * 90.26292 * 23 22 21 26 26 C 1.33995 * 109.04583 * 239.80181 * 25 23 22 27 27 O 1.21596 * 123.05889 * 179.97438 * 26 25 23 28 28 N 1.33997 * 113.88545 * 0.02562 * 26 25 23 29 29 C 1.47354 * 109.17927 * 359.87883 * 28 26 25 30 30 H 1.08997 * 110.86385 * 241.56887 * 29 28 26 31 31 H 1.09002 * 109.47365 * 175.03440 * 1 2 3 32 32 H 1.09001 * 109.46944 * 55.03325 * 1 2 3 33 33 H 1.08998 * 109.47309 * 295.04120 * 1 2 3 34 34 H 0.96997 * 119.99915 * 179.97438 * 7 6 4 35 35 H 0.97001 * 119.99838 * 95.00168 * 12 2 1 36 36 H 1.08998 * 109.47267 * 300.01194 * 15 13 12 37 37 H 1.09009 * 109.46626 * 60.00842 * 15 13 12 38 38 H 1.09003 * 109.47279 * 300.00134 * 16 15 13 39 39 H 1.09000 * 109.47039 * 60.00487 * 16 15 13 40 40 H 1.08999 * 109.47392 * 300.00430 * 17 16 15 41 41 H 1.09000 * 109.47124 * 60.00107 * 17 16 15 42 42 H 1.08998 * 109.47651 * 300.00010 * 18 17 16 43 43 H 1.08996 * 109.47399 * 60.00408 * 18 17 16 44 44 H 1.09000 * 110.76256 * 152.99760 * 22 21 19 45 45 H 1.09005 * 110.76383 * 276.19549 * 22 21 19 46 46 H 0.96999 * 125.47925 * 59.83422 * 25 23 22 47 47 H 0.97005 * 125.47993 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6131 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7820 10 1 2.1061 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4449 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6487 -0.7288 3.5878 16 6 2.6998 0.2542 4.7591 17 6 3.2098 -0.4671 6.0083 18 6 3.2603 0.5158 7.1798 19 6 3.7697 -0.2057 8.4292 20 1 4.7250 -0.6916 8.2305 21 16 2.5302 -1.4250 9.0289 22 6 3.0799 -1.3536 10.7825 23 6 3.4946 0.1216 10.9482 24 1 4.3086 0.2061 11.6681 25 7 2.3328 0.9038 11.3988 26 6 2.0709 1.8579 10.4951 27 8 1.1584 2.6525 10.6151 28 7 2.9054 1.8560 9.4467 29 6 3.8900 0.7724 9.6137 30 1 4.9021 1.1729 9.6702 31 1 -0.3634 -1.0238 -0.0890 32 1 -0.3633 0.5890 -0.8422 33 1 -0.3634 0.4350 0.9310 34 1 2.9365 -0.1048 -4.2555 35 1 2.2489 -1.6318 1.1526 36 1 1.9759 -1.5507 3.8326 37 1 3.6479 -1.1214 3.3986 38 1 3.3726 1.0762 4.5145 39 1 1.7005 0.6464 4.9481 40 1 2.5374 -1.2893 6.2531 41 1 4.2091 -0.8590 5.8191 42 1 3.9324 1.3383 6.9353 43 1 2.2608 0.9073 7.3689 44 1 2.2589 -1.6021 11.4551 45 1 3.9282 -2.0175 10.9489 46 1 1.8365 0.7533 12.2185 47 1 2.8696 2.4710 8.6975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356437290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = -99.628067 kcal Electronic energy + Delta-G solvation = -26908.879075 eV Core-core repulsion = 23023.090485 eV Total energy + Delta-G solvation = -3885.788590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.27497 -40.62419 -38.29715 -37.10599 -36.50445 -34.63073 -34.37038 -33.25910 -32.06519 -31.12196 -28.58485 -27.35242 -26.23739 -24.15202 -23.13659 -22.39884 -21.69077 -21.46280 -21.11075 -19.21841 -19.10372 -17.78959 -17.58486 -17.28266 -17.17331 -16.93970 -16.76403 -16.17586 -15.91429 -15.72751 -15.41584 -15.00451 -14.84511 -14.55539 -14.49205 -14.24166 -13.99899 -13.89839 -13.59407 -13.30483 -13.10771 -13.05315 -12.89504 -12.78924 -12.58789 -12.45159 -12.02547 -11.99185 -11.89537 -11.87482 -11.51073 -11.42226 -11.24765 -11.07156 -10.87345 -10.64567 -10.30538 -9.92312 -9.78271 -8.66660 -8.40413 -6.46291 0.85909 1.27567 1.31893 1.36231 1.42972 1.81958 1.84439 2.09017 2.25576 2.52601 2.97825 3.02681 3.22274 3.33780 3.70252 3.82002 3.95410 4.06074 4.07725 4.18113 4.29744 4.38503 4.44090 4.55252 4.63269 4.64120 4.70341 4.72586 4.78690 4.80676 4.83982 4.86385 4.95782 5.00486 5.10767 5.20890 5.35763 5.40160 5.43714 5.50389 5.77689 5.96754 6.12452 6.24747 6.38223 6.58620 6.95072 7.20133 7.52466 7.57776 8.74535 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.001865 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.937167 B =15007.344004 C =15499.189721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.232 3.768 3 H 0.028 0.972 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.032 3.968 7 N -0.929 5.929 8 Si 0.927 3.073 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.260 1.260 12 N -0.708 5.708 13 C 0.493 3.507 14 O -0.603 6.603 15 C -0.130 4.130 16 C -0.097 4.097 17 C -0.107 4.107 18 C -0.102 4.102 19 C -0.029 4.029 20 H 0.138 0.862 21 S -0.348 6.348 22 C -0.069 4.069 23 C 0.125 3.875 24 H 0.149 0.851 25 N -0.724 5.724 26 C 0.694 3.306 27 O -0.647 6.647 28 N -0.725 5.725 29 C 0.122 3.878 30 H 0.148 0.852 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.271 0.729 35 H 0.406 0.594 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.113 0.887 45 H 0.133 0.867 46 H 0.436 0.564 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -3.562 34.640 36.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.127 3.873 3 H 0.046 0.954 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.169 4.169 7 N -0.568 5.568 8 Si 0.753 3.247 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.185 1.185 12 N -0.357 5.357 13 C 0.281 3.719 14 O -0.486 6.486 15 C -0.170 4.170 16 C -0.135 4.135 17 C -0.144 4.144 18 C -0.141 4.141 19 C -0.158 4.158 20 H 0.155 0.845 21 S -0.122 6.122 22 C -0.218 4.218 23 C 0.018 3.982 24 H 0.166 0.834 25 N -0.387 5.387 26 C 0.392 3.608 27 O -0.530 6.530 28 N -0.386 5.386 29 C 0.015 3.985 30 H 0.165 0.835 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.241 0.759 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.132 0.868 45 H 0.151 0.849 46 H 0.279 0.721 47 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 7.986 -2.999 33.959 35.014 hybrid contribution 0.245 1.093 -0.327 1.167 sum 8.231 -1.906 33.633 34.677 Atomic orbital electron populations 1.22111 0.97439 1.01166 0.99258 1.18854 0.91790 0.93130 0.83476 0.95418 1.21191 1.44235 0.94813 0.96116 0.92430 1.25614 0.93841 1.02376 0.95023 1.69975 1.46678 1.37696 1.02412 0.86044 0.79615 0.81479 0.77606 1.19828 1.20183 1.18470 1.46443 1.65269 1.14486 1.09478 1.21635 0.77112 0.87221 0.85899 1.90615 1.53385 1.18461 1.86136 1.21716 1.04379 0.99783 0.91080 1.21241 1.01224 0.97568 0.93465 1.21518 1.02416 0.97755 0.92722 1.21459 1.01892 0.98682 0.92073 1.24484 0.99700 0.94676 0.96935 0.84463 1.88831 1.51359 1.60350 1.11660 1.24729 1.05998 0.98017 0.93061 1.22736 0.89798 0.89515 0.96138 0.83399 1.45264 1.35146 1.33547 1.24693 1.16243 0.81545 0.81427 0.81562 1.90969 1.35785 1.45827 1.80377 1.45384 1.33113 1.36186 1.23957 1.22898 0.95899 0.87558 0.92167 0.83486 0.92374 0.93548 0.94681 0.92001 0.75866 0.87348 0.86673 0.92206 0.93717 0.92239 0.89580 0.88711 0.92564 0.86833 0.84870 0.72104 0.72423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.24 9.47 71.98 0.68 -5.56 16 2 C 0.23 11.11 2.22 44.24 0.10 11.21 16 3 H 0.03 1.46 4.73 -2.39 -0.01 1.45 16 4 C -0.53 -28.54 9.05 25.60 0.23 -28.31 16 5 H 0.06 3.31 8.06 -2.91 -0.02 3.28 16 6 C 0.03 1.80 5.47 84.66 0.46 2.27 16 7 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 8 Si 0.93 45.11 26.99 68.60 1.85 46.96 16 9 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.26 -12.54 6.82 99.48 0.68 -11.86 16 12 N -0.71 -27.88 5.07 -446.10 -2.26 -30.14 16 13 C 0.49 18.17 7.79 87.66 0.68 18.85 16 14 O -0.60 -27.45 15.65 -3.03 -0.05 -27.50 16 15 C -0.13 -3.11 5.70 29.85 0.17 -2.94 16 16 C -0.10 -2.17 4.50 30.59 0.14 -2.04 16 17 C -0.11 -1.57 5.10 30.59 0.16 -1.41 16 18 C -0.10 -1.21 3.66 30.60 0.11 -1.10 16 19 C -0.03 -0.20 3.22 30.96 0.10 -0.10 16 20 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 21 S -0.35 -4.57 21.89 -56.49 -1.24 -5.80 16 22 C -0.07 -0.25 7.10 72.37 0.51 0.26 16 23 C 0.12 0.34 4.16 45.47 0.19 0.53 16 24 H 0.15 -0.65 8.14 -2.39 -0.02 -0.67 16 25 N -0.72 -7.33 5.94 -455.43 -2.71 -10.03 16 26 C 0.69 13.41 8.92 179.54 1.60 15.01 16 27 O -0.65 -20.20 18.05 -4.02 -0.07 -20.27 16 28 N -0.72 -9.09 4.87 -455.04 -2.22 -11.31 16 29 C 0.12 0.54 4.05 45.41 0.18 0.73 16 30 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.41 13.79 8.59 -92.71 -0.80 12.99 16 36 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 39 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 40 H 0.06 1.01 7.42 -2.39 -0.02 0.99 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.97 7.25 -2.39 -0.02 0.96 16 44 H 0.11 0.45 8.07 -2.39 -0.02 0.44 16 45 H 0.13 -0.20 8.14 -2.38 -0.02 -0.22 16 46 H 0.44 3.33 8.96 -92.71 -0.83 2.50 16 47 H 0.43 5.47 7.96 -92.70 -0.74 4.73 16 Total: -1.00 -84.42 388.96 -2.45 -86.88 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -1.39 Total: 18.94 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.32 Total: 7.40 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -6.89 Total: -106.59 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.12 Total: -47.78 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.85 Total: 46.96 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -1.24 Total: -5.80 kcal Total: -84.42 -2.45 -86.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356437290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.753 kcal (2) G-P(sol) polarization free energy of solvation -84.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds