Wall clock time and date at job start Sat Apr 11 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47068 * 2 1 4 4 C 1.50696 * 109.47282 * 239.99609 * 2 1 3 5 5 O 1.21284 * 120.00247 * 253.55846 * 4 2 1 6 6 N 1.34774 * 120.00212 * 73.55914 * 4 2 1 7 7 C 1.46502 * 120.00451 * 185.42463 * 6 4 2 8 8 C 1.53002 * 109.47222 * 175.32868 * 7 6 4 9 9 C 1.50702 * 115.54982 * 65.83995 * 8 7 6 10 10 H 1.07994 * 119.99997 * 264.45099 * 9 8 7 11 11 C 1.37874 * 119.99706 * 84.45269 * 9 8 7 12 12 N 1.31514 * 120.00283 * 1.84928 * 11 9 8 13 13 Si 1.86809 * 120.00037 * 181.85529 * 11 9 8 14 14 H 1.48497 * 109.47036 * 89.99734 * 13 11 9 15 15 H 1.48494 * 109.46960 * 209.99877 * 13 11 9 16 16 H 1.48505 * 109.46653 * 329.99849 * 13 11 9 17 17 C 1.52996 * 117.49536 * 280.17285 * 8 7 6 18 18 C 1.53000 * 117.49725 * 211.51351 * 8 7 6 19 19 N 1.46504 * 109.47024 * 119.99882 * 2 1 3 20 20 N 1.28728 * 125.34325 * 59.97219 * 19 2 1 21 21 N 1.28992 * 108.94284 * 179.74533 * 20 19 2 22 22 C 1.34048 * 107.26736 * 0.43676 * 21 20 19 23 23 C 1.48459 * 126.67119 * 179.83316 * 22 21 20 24 24 C 1.39296 * 120.11935 * 359.68582 * 23 22 21 25 25 C 1.38029 * 119.88002 * 179.97438 * 24 23 22 26 26 C 1.38309 * 120.12281 * 359.97438 * 25 24 23 27 27 C 1.38319 * 120.23315 * 0.27678 * 26 25 24 28 28 C 1.38028 * 120.11780 * 359.48575 * 27 26 25 29 29 N 1.28878 * 125.34097 * 240.00042 * 19 2 1 30 30 H 1.08996 * 109.47378 * 54.90655 * 1 2 3 31 31 H 1.09003 * 109.47359 * 174.90956 * 1 2 3 32 32 H 1.09005 * 109.47386 * 294.90706 * 1 2 3 33 33 H 0.97009 * 119.99628 * 5.42477 * 6 4 2 34 34 H 1.08998 * 109.46711 * 295.32611 * 7 6 4 35 35 H 1.08999 * 109.46744 * 55.32769 * 7 6 4 36 36 H 0.97002 * 120.00087 * 185.01710 * 12 11 9 37 37 H 1.08998 * 117.50480 * 359.97438 * 17 8 7 38 38 H 1.09002 * 117.49823 * 145.02510 * 17 8 7 39 39 H 1.08994 * 117.49422 * 214.97958 * 18 8 7 40 40 H 1.08996 * 117.49841 * 359.97438 * 18 8 7 41 41 H 1.07997 * 120.06238 * 0.02562 * 24 23 22 42 42 H 1.08003 * 119.94201 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.88762 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.94419 * 179.74792 * 27 26 25 45 45 H 1.07997 * 120.06049 * 180.25822 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5148 -1.8192 -1.1359 6 7 1.9455 -0.1138 -2.4357 7 6 2.3230 -0.8485 -3.6457 8 6 2.0232 0.0085 -4.8772 9 6 2.8450 1.2647 -5.0106 10 1 2.4552 2.2057 -4.6515 11 6 4.0945 1.2126 -5.5911 12 7 4.5542 0.0736 -6.0612 13 14 5.1346 2.7598 -5.7097 14 1 5.9777 2.8838 -4.4936 15 1 6.0054 2.6800 -6.9098 16 1 4.2472 3.9455 -5.8199 17 6 0.5753 0.0560 -5.3692 18 6 1.6293 -0.7182 -6.1647 19 7 2.0183 -0.6906 1.1962 20 7 1.7711 -1.9165 1.5014 21 7 2.3598 -2.1979 2.6141 22 6 2.9938 -1.0890 3.0204 23 6 3.8044 -0.9328 4.2543 24 6 3.9599 -2.0057 5.1290 25 6 4.7151 -1.8551 6.2745 26 6 5.3172 -0.6419 6.5544 27 6 5.1617 0.4283 5.6920 28 6 4.4128 0.2872 4.5412 29 7 2.7623 -0.1659 2.1084 30 1 -0.3634 0.5908 -0.8408 31 1 -0.3634 -1.0236 -0.0912 32 1 -0.3634 0.4328 0.9321 33 1 1.6331 0.8022 -2.5021 34 1 3.3880 -1.0784 -3.6136 35 1 1.7525 -1.7757 -3.7006 36 1 5.4604 0.0205 -6.4032 37 1 -0.1636 -0.5237 -4.8159 38 1 0.2172 0.9956 -5.7899 39 1 1.9644 -0.2875 -7.1082 40 1 1.5843 -1.8068 -6.1345 41 1 3.4912 -2.9539 4.9108 42 1 4.8367 -2.6864 6.9532 43 1 5.9069 -0.5281 7.4520 44 1 5.6307 1.3747 5.9172 45 1 4.2954 1.1221 3.8663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431174791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:26 Heat of formation + Delta-G solvation = 123.209234 kcal Electronic energy + Delta-G solvation = -28444.233629 eV Core-core repulsion = 24464.956789 eV Total energy + Delta-G solvation = -3979.276840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.44103 -41.09130 -39.99635 -38.59538 -36.68022 -35.24923 -34.65039 -33.98581 -33.22578 -31.88961 -30.97834 -28.38225 -27.33348 -26.60780 -25.52944 -24.32344 -23.13931 -22.87357 -22.55000 -21.52508 -21.15234 -19.36563 -18.56066 -18.20769 -18.00412 -17.56867 -16.73823 -16.66596 -16.47943 -16.30628 -15.84402 -15.67421 -15.08311 -14.91406 -14.68714 -14.49635 -14.33771 -14.28096 -13.91115 -13.62461 -13.57169 -13.48010 -13.44279 -12.95471 -12.84408 -12.82354 -12.37408 -12.35593 -12.27295 -12.23094 -12.01787 -11.89084 -11.87208 -11.47548 -11.06936 -10.95885 -10.45980 -10.14360 -9.95879 -9.91441 -9.64187 -8.12074 -6.25626 -0.27843 0.16568 0.44575 0.61158 1.33587 1.36468 1.41482 1.44648 1.51767 1.99321 2.41297 2.63561 2.88314 3.10134 3.17700 3.36417 3.47867 3.59089 3.60478 4.05452 4.08104 4.18252 4.21609 4.35609 4.40428 4.48503 4.53148 4.54090 4.59681 4.63154 4.64789 4.70216 4.90715 4.93976 5.00261 5.00990 5.03508 5.11657 5.29099 5.42085 5.49789 5.50687 5.55541 5.55774 5.67899 5.76312 5.98873 6.34057 6.47449 6.83691 7.08016 7.18466 7.45370 8.95569 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.002464 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.437524 B =11360.152364 C =12547.869803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.179 0.821 4 C 0.498 3.502 5 O -0.576 6.576 6 N -0.678 5.678 7 C 0.181 3.819 8 C 0.003 3.997 9 C -0.500 4.500 10 H 0.071 0.929 11 C 0.022 3.978 12 N -0.910 5.910 13 Si 0.946 3.054 14 H -0.282 1.282 15 H -0.294 1.294 16 H -0.259 1.259 17 C -0.169 4.169 18 C -0.160 4.160 19 N -0.120 5.120 20 N -0.046 5.046 21 N -0.304 5.304 22 C 0.201 3.799 23 C -0.040 4.040 24 C -0.092 4.092 25 C -0.121 4.121 26 C -0.096 4.096 27 C -0.122 4.122 28 C -0.093 4.093 29 N -0.308 5.308 30 H 0.133 0.867 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.419 0.581 34 H 0.026 0.974 35 H 0.043 0.957 36 H 0.257 0.743 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.128 0.872 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.156 0.844 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 4.348 22.550 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.196 0.804 4 C 0.281 3.719 5 O -0.455 6.455 6 N -0.328 5.328 7 C 0.057 3.943 8 C 0.002 3.998 9 C -0.538 4.538 10 H 0.089 0.911 11 C -0.178 4.178 12 N -0.547 5.547 13 Si 0.773 3.227 14 H -0.208 1.208 15 H -0.221 1.221 16 H -0.183 1.183 17 C -0.206 4.206 18 C -0.199 4.199 19 N -0.033 5.033 20 N -0.039 5.039 21 N -0.176 5.176 22 C -0.079 4.079 23 C -0.043 4.043 24 C -0.113 4.113 25 C -0.139 4.139 26 C -0.115 4.115 27 C -0.140 4.140 28 C -0.113 4.113 29 N -0.158 5.158 30 H 0.151 0.849 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.257 0.743 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.146 0.854 42 H 0.174 0.826 43 H 0.178 0.822 44 H 0.174 0.826 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.221 3.220 21.866 22.710 hybrid contribution 1.215 0.764 -0.680 1.588 sum -4.006 3.984 21.186 21.926 Atomic orbital electron populations 1.22239 0.85891 1.05495 1.07255 1.22164 1.00143 0.97879 0.76354 0.80384 1.20574 0.79437 0.86424 0.85427 1.90795 1.46270 1.22042 1.86413 1.45624 1.64788 1.17898 1.04527 1.20636 0.97439 0.92889 0.83368 1.19037 0.93720 0.96295 0.90752 1.20732 1.01009 0.93340 1.38740 0.91100 1.25720 0.99500 0.98243 0.94373 1.70119 1.16370 1.26900 1.41361 0.85734 0.79009 0.81015 0.76982 1.20827 1.22050 1.18265 1.23027 0.91837 1.01430 1.04349 1.22418 1.04352 0.96396 0.96711 1.49927 1.29617 1.06840 1.16879 1.78951 1.17607 0.98916 1.08460 1.75999 1.12160 1.24294 1.05107 1.24170 1.00219 0.86175 0.97285 1.17518 0.99741 0.97004 0.90032 1.21327 0.98183 0.97701 0.94055 1.21445 0.96711 0.99332 0.96380 1.21768 0.97624 0.92167 0.99933 1.21454 0.98321 1.00847 0.93330 1.21343 0.96117 0.95651 0.98192 1.74800 1.13480 1.26941 1.00580 0.84851 0.91320 0.88476 0.74295 0.95604 0.93834 0.93402 0.88805 0.89323 0.91913 0.91427 0.85418 0.82633 0.82213 0.82641 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.36 71.98 0.67 -1.81 16 2 C 0.14 3.37 3.64 44.24 0.16 3.53 16 3 H 0.18 3.11 8.14 -2.39 -0.02 3.09 16 4 C 0.50 16.90 7.10 87.66 0.62 17.52 16 5 O -0.58 -25.83 15.71 -3.04 -0.05 -25.88 16 6 N -0.68 -22.47 5.48 -463.06 -2.54 -25.01 16 7 C 0.18 7.67 5.51 86.38 0.48 8.15 16 8 C 0.00 0.12 1.43 -52.93 -0.08 0.04 16 9 C -0.50 -23.86 8.63 25.60 0.22 -23.64 16 10 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 11 C 0.02 1.13 5.43 84.65 0.46 1.59 16 12 N -0.91 -50.51 12.74 21.45 0.27 -50.23 16 13 Si 0.95 40.87 29.54 68.60 2.03 42.90 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 15 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 17 C -0.17 -6.06 9.96 30.62 0.30 -5.76 16 18 C -0.16 -6.97 9.24 30.62 0.28 -6.69 16 19 N -0.12 -3.79 3.54 -172.59 -0.61 -4.40 16 20 N -0.05 -1.69 12.05 37.02 0.45 -1.24 16 21 N -0.30 -10.82 12.23 -52.19 -0.64 -11.46 16 22 C 0.20 6.38 7.94 137.38 1.09 7.47 16 23 C -0.04 -1.01 5.88 -20.04 -0.12 -1.12 16 24 C -0.09 -1.97 9.70 22.47 0.22 -1.75 16 25 C -0.12 -1.75 10.03 22.24 0.22 -1.53 16 26 C -0.10 -1.15 10.04 22.31 0.22 -0.92 16 27 C -0.12 -1.73 10.03 22.24 0.22 -1.50 16 28 C -0.09 -1.91 9.70 22.48 0.22 -1.69 16 29 N -0.31 -9.64 11.85 -52.13 -0.62 -10.26 16 30 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.42 11.25 8.36 -92.70 -0.77 10.48 16 34 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.04 1.84 8.09 -2.39 -0.02 1.82 16 36 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 37 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.13 2.80 7.89 -2.91 -0.02 2.78 16 42 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 43 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 44 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.13 2.62 7.88 -2.91 -0.02 2.60 16 Total: -1.00 -73.53 393.87 3.74 -69.79 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.24 Total: 23.92 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 5.20 Total: -8.12 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.69 Total: -102.61 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -73.53 3.74 -69.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431174791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.000 kcal (2) G-P(sol) polarization free energy of solvation -73.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds