Wall clock time and date at job start Sat Apr 11 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46607 * 2 1 4 4 N 1.46497 * 109.47053 * 119.99757 * 2 1 3 5 5 C 1.46508 * 120.00288 * 305.13642 * 4 2 1 6 6 C 1.50693 * 109.47062 * 87.29835 * 5 4 2 7 7 C 1.38225 * 119.61860 * 94.07519 * 6 5 4 8 8 C 1.38629 * 119.16425 * 179.75414 * 7 6 5 9 9 C 1.38673 * 118.41789 * 0.50956 * 8 7 6 10 10 C 1.38176 * 119.16124 * 359.73316 * 9 8 7 11 11 N 1.31858 * 119.62071 * 274.34688 * 6 5 4 12 12 S 1.65603 * 119.99986 * 125.14027 * 4 2 1 13 13 O 1.42108 * 106.39878 * 331.28938 * 12 4 2 14 14 O 1.42099 * 106.40059 * 198.37409 * 12 4 2 15 15 N 1.65596 * 107.22104 * 84.83141 * 12 4 2 16 16 C 1.46498 * 119.99984 * 274.85578 * 15 12 4 17 17 C 1.46499 * 119.99999 * 94.85003 * 15 12 4 18 18 H 1.09002 * 109.47211 * 4.96722 * 17 15 12 19 19 C 1.52995 * 109.47240 * 244.96891 * 17 15 12 20 20 C 1.50705 * 109.47056 * 124.96790 * 17 15 12 21 21 H 1.08001 * 119.99881 * 359.97438 * 20 17 15 22 22 C 1.37873 * 119.99894 * 180.02562 * 20 17 15 23 23 N 1.31514 * 120.00059 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 119.99895 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47353 * 270.00342 * 24 22 20 26 26 H 1.48506 * 109.47014 * 30.00351 * 24 22 20 27 27 H 1.48500 * 109.47104 * 149.99806 * 24 22 20 28 28 H 1.09000 * 109.47689 * 305.90784 * 1 2 3 29 29 H 1.09001 * 109.47574 * 65.91597 * 1 2 3 30 30 H 1.09006 * 109.47334 * 185.91072 * 1 2 3 31 31 H 1.08999 * 109.46994 * 240.00016 * 2 1 3 32 32 H 1.09002 * 109.47175 * 184.91363 * 3 2 1 33 33 H 1.09002 * 109.47221 * 304.91340 * 3 2 1 34 34 H 1.09006 * 109.47647 * 64.91766 * 3 2 1 35 35 H 1.09000 * 109.47131 * 207.30444 * 5 4 2 36 36 H 1.09001 * 109.46468 * 327.29950 * 5 4 2 37 37 H 1.08004 * 120.41724 * 359.97438 * 7 6 5 38 38 H 1.08000 * 120.78996 * 180.26281 * 8 7 6 39 39 H 1.08004 * 120.41655 * 179.70659 * 9 8 7 40 40 H 1.08005 * 119.61728 * 180.02562 * 10 9 8 41 41 H 1.09002 * 109.47055 * 269.99871 * 16 15 12 42 42 H 1.08996 * 109.47341 * 29.99382 * 16 15 12 43 43 H 1.08996 * 109.47237 * 150.00043 * 16 15 12 44 44 H 1.09002 * 109.47352 * 54.78236 * 19 17 15 45 45 H 1.08999 * 109.47292 * 174.78233 * 19 17 15 46 46 H 1.08996 * 109.47263 * 294.78248 * 19 17 15 47 47 H 0.97001 * 119.99689 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5740 -0.2590 2.5239 6 6 0.2900 -0.9639 2.8777 7 6 0.3331 -2.1339 3.6125 8 6 -0.8541 -2.7719 3.9371 9 6 -2.0451 -2.2124 3.4993 10 6 -2.0095 -1.0430 2.7642 11 7 -0.8613 -0.4605 2.4781 12 16 3.0725 -1.9590 1.0476 13 8 2.8023 -2.5599 -0.2115 14 8 3.0191 -2.6711 2.2761 15 7 4.5967 -1.3200 0.9434 16 6 5.1203 -0.8822 -0.3529 17 6 5.4214 -1.1924 2.1474 18 1 4.9038 -1.6469 2.9922 19 6 5.6719 0.2883 2.4395 20 6 6.7387 -1.8915 1.9304 21 1 6.9411 -2.3822 0.9898 22 6 7.6850 -1.9057 2.9330 23 7 7.4379 -1.3095 4.0789 24 14 9.3176 -2.7728 2.6642 25 1 9.2021 -4.1897 3.0935 26 1 9.6751 -2.7196 1.2238 27 1 10.3734 -2.0984 3.4615 28 1 -0.3634 0.6027 0.8323 29 1 -0.3634 0.4194 -0.9382 30 1 -0.3634 -1.0222 0.1058 31 1 1.8933 -0.5138 -0.8900 32 1 3.1263 1.4439 -0.0880 33 1 1.6064 1.9811 -0.8427 34 1 1.7502 1.9304 0.9308 35 1 2.3387 -0.5051 3.2607 36 1 1.4077 0.8183 2.5189 37 1 1.2795 -2.5439 3.9328 38 1 -0.8513 -3.6851 4.5137 39 1 -2.9885 -2.6850 3.7297 40 1 -2.9327 -0.6006 2.4199 41 1 5.6330 -1.7133 -0.8371 42 1 4.2966 -0.5468 -0.9830 43 1 5.8210 -0.0608 -0.2031 44 1 4.7183 0.8122 2.5047 45 1 6.2060 0.3870 3.3845 46 1 6.2699 0.7208 1.6374 47 1 8.1039 -1.3192 4.7841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558690241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:45 Heat of formation + Delta-G solvation = -28.749526 kcal Electronic energy + Delta-G solvation = -30059.051702 eV Core-core repulsion = 26176.336636 eV Total energy + Delta-G solvation = -3882.715066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25424 -37.30720 -36.74097 -36.13521 -35.22461 -32.72160 -32.55405 -32.40327 -30.34711 -29.12136 -26.96946 -26.35722 -25.49304 -25.18414 -23.45404 -22.30172 -20.97422 -20.44954 -18.42516 -17.50788 -17.08297 -16.75727 -16.29945 -16.01672 -15.62529 -15.41841 -14.99928 -14.41411 -14.07797 -13.87741 -13.73579 -13.46391 -13.23461 -13.19931 -13.03415 -12.78050 -12.31475 -12.27129 -11.93996 -11.81861 -11.75467 -11.72175 -11.44375 -11.37396 -11.26145 -11.09286 -10.97578 -10.95860 -10.84226 -10.67980 -10.44745 -10.25411 -10.01864 -9.79750 -9.38414 -9.22023 -9.00837 -8.86361 -8.46609 -7.95418 -6.08564 -4.14351 0.96431 1.26278 1.33916 3.28322 3.34886 3.37048 3.40339 3.83874 4.09324 4.30536 4.39595 4.74520 4.83377 4.86609 4.92720 5.09531 5.22779 5.23617 5.27232 5.31813 5.43871 5.50669 5.60045 5.74183 5.78862 5.81427 5.87976 5.90820 6.08503 6.15468 6.16288 6.23938 6.27769 6.33114 6.47777 6.62056 6.65328 6.72397 6.80628 6.82263 6.87681 7.02457 7.47093 7.64474 7.79350 7.99303 8.02650 8.27354 8.87967 9.51399 10.97539 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.004116 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.208879 B = 6801.270703 C = 7552.118415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 C -0.162 4.162 4 N -0.997 5.997 5 C 0.177 3.823 6 C 0.106 3.894 7 C -0.149 4.149 8 C -0.081 4.081 9 C -0.175 4.175 10 C 0.086 3.914 11 N -0.464 5.464 12 S 2.773 3.227 13 O -0.994 6.994 14 O -0.973 6.973 15 N -0.989 5.989 16 C 0.112 3.888 17 C 0.266 3.734 18 H 0.062 0.938 19 C -0.145 4.145 20 C -0.520 4.520 21 H 0.062 0.938 22 C 0.065 3.935 23 N -0.890 5.890 24 Si 0.897 3.103 25 H -0.280 1.280 26 H -0.274 1.274 27 H -0.286 1.286 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.153 0.847 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.048 0.952 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.011 0.989 45 H 0.089 0.911 46 H 0.033 0.967 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.967 4.839 -3.170 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 C -0.221 4.221 4 N -0.834 5.834 5 C 0.050 3.950 6 C -0.033 4.033 7 C -0.169 4.169 8 C -0.107 4.107 9 C -0.195 4.195 10 C -0.071 4.071 11 N -0.174 5.174 12 S 2.784 3.216 13 O -0.978 6.978 14 O -0.956 6.956 15 N -0.831 5.831 16 C -0.035 4.035 17 C 0.163 3.837 18 H 0.080 0.920 19 C -0.205 4.205 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.138 4.138 23 N -0.528 5.528 24 Si 0.725 3.275 25 H -0.206 1.206 26 H -0.199 1.199 27 H -0.212 1.212 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.171 0.829 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.030 0.970 45 H 0.107 0.893 46 H 0.052 0.948 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.088 4.724 -3.518 17.133 hybrid contribution 0.962 -0.967 0.386 1.418 sum -15.126 3.757 -3.132 15.898 Atomic orbital electron populations 1.22374 0.94159 1.02633 1.02732 1.20854 0.95652 0.93308 0.86582 1.22179 1.01722 0.95931 1.02221 1.58338 1.61100 1.53352 1.10612 1.19974 0.91312 0.99690 0.84045 1.21719 0.94258 0.93431 0.93864 1.22428 1.00501 0.95668 0.98335 1.21643 0.92307 0.99324 0.97407 1.22115 0.99039 0.97939 1.00433 1.22695 0.96104 0.92962 0.95363 1.67533 0.98042 1.33212 1.18584 1.02181 0.72675 0.73659 0.73070 1.93531 1.85223 1.74429 1.44576 1.93545 1.86616 1.69827 1.45660 1.57742 1.30469 1.79647 1.15245 1.21126 0.98641 1.00271 0.83453 1.18778 0.90455 0.93736 0.80745 0.92010 1.22107 0.97981 0.97143 1.03265 1.21312 0.99518 1.34361 1.00788 0.91968 1.24889 0.98566 0.95334 0.94981 1.69870 1.35157 1.43290 1.04498 0.86519 0.83071 0.79741 0.78207 1.20592 1.19887 1.21186 0.88704 0.93009 0.93443 0.89266 0.92024 0.91939 0.91953 0.88036 0.88658 0.82929 0.84881 0.85193 0.83077 0.93339 0.93663 0.90909 0.97014 0.89262 0.94756 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 7.58 37.16 0.28 -1.73 16 2 C 0.14 1.92 3.25 -67.93 -0.22 1.70 16 3 C -0.16 -1.84 9.32 37.16 0.35 -1.49 16 4 N -1.00 -15.56 2.77 -108.57 -0.30 -15.86 16 5 C 0.18 2.53 5.08 -5.19 -0.03 2.51 16 6 C 0.11 1.52 5.87 -82.59 -0.48 1.04 16 7 C -0.15 -2.15 9.26 -39.44 -0.37 -2.51 16 8 C -0.08 -0.95 10.18 -39.28 -0.40 -1.35 16 9 C -0.18 -1.79 10.11 -39.44 -0.40 -2.19 16 10 C 0.09 0.93 11.18 -17.55 -0.20 0.74 16 11 N -0.46 -6.03 6.49 -9.48 -0.06 -6.09 16 12 S 2.77 54.69 6.00 -107.50 -0.65 54.04 16 13 O -0.99 -21.35 16.07 -57.17 -0.92 -22.27 16 14 O -0.97 -21.29 13.74 -57.17 -0.79 -22.07 16 15 N -0.99 -20.26 3.12 -115.86 -0.36 -20.62 16 16 C 0.11 2.00 9.33 59.85 0.56 2.55 16 17 C 0.27 6.31 2.67 -69.08 -0.18 6.13 16 18 H 0.06 1.62 6.73 -51.93 -0.35 1.27 16 19 C -0.15 -3.18 8.86 37.15 0.33 -2.85 16 20 C -0.52 -13.75 8.31 -34.44 -0.29 -14.03 16 21 H 0.06 1.65 7.37 -52.49 -0.39 1.26 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -24.25 11.38 55.43 0.63 -23.62 16 24 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.09 1.18 5.61 -51.93 -0.29 0.88 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.68 7.77 -51.93 -0.40 0.27 16 31 H 0.09 1.28 6.98 -51.93 -0.36 0.92 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.68 6.71 -51.93 -0.35 0.34 16 35 H 0.10 1.52 7.46 -51.93 -0.39 1.14 16 36 H 0.10 1.18 6.63 -51.93 -0.34 0.84 16 37 H 0.15 2.39 6.89 -52.48 -0.36 2.03 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.05 0.89 8.02 -51.93 -0.42 0.47 16 42 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 43 H 0.07 1.25 6.80 -51.93 -0.35 0.90 16 44 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.09 2.17 6.23 -51.93 -0.32 1.85 16 46 H 0.03 0.72 7.06 -51.93 -0.37 0.36 16 47 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -31.08 379.95 -10.08 -41.16 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.20 Total: 3.60 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.14 Total: -9.86 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -0.09 Total: -66.20 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.70 Total: -44.34 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 54.69 SS G_CDS: -0.65 Total: 54.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.08 -10.08 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558690241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.411 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds