Wall clock time and date at job start Sat Apr 11 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46823 * 2 1 4 4 N 1.46499 * 109.46743 * 119.99137 * 2 1 3 5 5 C 1.46498 * 120.00715 * 306.09570 * 4 2 1 6 6 C 1.50701 * 109.47011 * 272.59827 * 5 4 2 7 7 C 1.38221 * 119.62180 * 96.04502 * 6 5 4 8 8 C 1.38630 * 119.16464 * 179.74474 * 7 6 5 9 9 C 1.38678 * 118.41466 * 0.47595 * 8 7 6 10 10 C 1.38173 * 119.16471 * 359.50387 * 9 8 7 11 11 N 1.31855 * 119.61413 * 276.01967 * 6 5 4 12 12 S 1.65611 * 119.99760 * 126.09145 * 4 2 1 13 13 O 1.42091 * 106.39813 * 23.54188 * 12 4 2 14 14 O 1.42095 * 106.40110 * 156.46403 * 12 4 2 15 15 N 1.65600 * 107.21968 * 270.00229 * 12 4 2 16 16 C 1.46496 * 119.99938 * 270.00270 * 15 12 4 17 17 C 1.46499 * 119.99900 * 89.99667 * 15 12 4 18 18 H 1.08998 * 109.47440 * 0.02562 * 17 15 12 19 19 C 1.53002 * 109.47174 * 120.00231 * 17 15 12 20 20 C 1.50699 * 109.47231 * 240.00135 * 17 15 12 21 21 H 1.08004 * 119.99984 * 0.02562 * 20 17 15 22 22 C 1.37877 * 120.00138 * 180.02562 * 20 17 15 23 23 N 1.31517 * 120.00109 * 179.97438 * 22 20 17 24 24 Si 1.86798 * 120.00005 * 359.97438 * 22 20 17 25 25 H 1.48501 * 109.47035 * 89.99835 * 24 22 20 26 26 H 1.48500 * 109.47562 * 209.99969 * 24 22 20 27 27 H 1.48506 * 109.47105 * 330.00403 * 24 22 20 28 28 H 1.08998 * 109.47300 * 306.08686 * 1 2 3 29 29 H 1.09001 * 109.46497 * 66.08169 * 1 2 3 30 30 H 1.08997 * 109.47003 * 186.08055 * 1 2 3 31 31 H 1.08993 * 109.47266 * 239.99251 * 2 1 3 32 32 H 1.09002 * 109.46837 * 170.95381 * 3 2 1 33 33 H 1.09003 * 109.46695 * 290.95136 * 3 2 1 34 34 H 1.09000 * 109.47342 * 50.95266 * 3 2 1 35 35 H 1.08995 * 109.47721 * 152.58953 * 5 4 2 36 36 H 1.09004 * 109.46751 * 32.59166 * 5 4 2 37 37 H 1.08005 * 120.41838 * 359.95477 * 7 6 5 38 38 H 1.07995 * 120.79410 * 180.23166 * 8 7 6 39 39 H 1.07999 * 120.41666 * 179.78115 * 9 8 7 40 40 H 1.07999 * 119.62351 * 180.25632 * 10 9 8 41 41 H 1.09002 * 109.47518 * 89.99837 * 16 15 12 42 42 H 1.09005 * 109.47141 * 209.99618 * 16 15 12 43 43 H 1.08998 * 109.47555 * 329.99513 * 16 15 12 44 44 H 1.08998 * 109.47056 * 59.99619 * 19 17 15 45 45 H 1.08993 * 109.47561 * 180.02562 * 19 17 15 46 46 H 1.09003 * 109.46563 * 300.00239 * 19 17 15 47 47 H 0.97000 * 119.99661 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 1.5578 -0.2724 2.5227 6 6 2.4448 0.8319 3.0374 7 6 2.0610 2.1494 2.8722 8 6 2.8816 3.1576 3.3540 9 6 4.0677 2.8014 3.9780 10 6 4.3850 1.4628 4.1071 11 7 3.5777 0.5300 3.6406 12 16 3.0908 -1.9437 1.0492 13 8 3.7518 -1.7621 -0.1955 14 8 3.7791 -2.0305 2.2893 15 7 2.2032 -3.3347 0.9088 16 6 1.8244 -4.0860 2.1080 17 6 1.7967 -3.8137 -0.4147 18 1 2.1676 -3.1301 -1.1783 19 6 2.3788 -5.2084 -0.6532 20 6 0.2927 -3.8783 -0.4854 21 1 -0.3009 -3.5908 0.3698 22 6 -0.3254 -4.3043 -1.6419 23 7 -1.6379 -4.3612 -1.7034 24 14 0.7014 -4.8008 -3.1213 25 1 1.0087 -6.2517 -3.0460 26 1 -0.0565 -4.5193 -4.3669 27 1 1.9684 -4.0262 -3.1269 28 1 -0.3634 0.6053 0.8305 29 1 -0.3632 0.4167 -0.9395 30 1 -0.3633 -1.0219 0.1089 31 1 1.8934 -0.5139 -0.8899 32 1 3.1180 1.4468 0.1616 33 1 1.8146 1.9075 -0.9598 34 1 1.5507 2.0009 0.7981 35 1 1.5999 -1.1206 3.2060 36 1 0.5315 0.0882 2.4540 37 1 1.1319 2.3904 2.3770 38 1 2.6056 4.1957 3.2426 39 1 4.7328 3.5605 4.3623 40 1 5.3049 1.1769 4.5955 41 1 0.8630 -3.7257 2.4740 42 1 1.7462 -5.1454 1.8633 43 1 2.5822 -3.9462 2.8789 44 1 2.0082 -5.8922 0.1104 45 1 2.0768 -5.5646 -1.6380 46 1 3.4666 -5.1616 -0.6020 47 1 -2.0727 -4.6606 -2.5172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558690242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:47 Heat of formation + Delta-G solvation = -42.122036 kcal Electronic energy + Delta-G solvation = -30253.331494 eV Core-core repulsion = 26370.036552 eV Total energy + Delta-G solvation = -3883.294942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16693 -38.53850 -38.26264 -38.04167 -36.82709 -34.47945 -33.79353 -33.01944 -31.80097 -31.62252 -28.08049 -27.50813 -27.14205 -26.86309 -24.35139 -23.21686 -22.68872 -21.78401 -19.83833 -19.03588 -18.67278 -18.37033 -17.67078 -17.39448 -17.11486 -16.59112 -16.48070 -15.87485 -15.32868 -15.24689 -15.03848 -14.83592 -14.66970 -14.39737 -14.20112 -14.13041 -13.90338 -13.83056 -13.56539 -13.50577 -13.36667 -13.06400 -13.02471 -12.87864 -12.78411 -12.70179 -12.59775 -12.24370 -12.13443 -12.08772 -12.01280 -11.67573 -11.46931 -11.28594 -10.72415 -10.70385 -10.41463 -9.97423 -9.86276 -9.66013 -8.25615 -6.27347 -0.36116 0.23765 0.48648 1.30241 1.39447 1.46277 1.95678 2.33178 2.53309 2.97914 3.08898 3.34077 3.47011 3.68671 3.91242 4.04177 4.05444 4.12667 4.24784 4.31535 4.32755 4.40592 4.43896 4.59472 4.62844 4.69562 4.71305 4.77892 4.80050 4.82997 4.84235 4.88728 4.91598 5.02776 5.09456 5.14955 5.20771 5.28978 5.31317 5.40671 5.49232 5.56201 5.57782 5.68546 5.87387 5.95533 6.38989 6.76856 7.21669 7.37058 8.89275 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018481 B = 0.004358 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.700755 B = 6423.038195 C = 7043.775990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 C -0.157 4.157 4 N -0.986 5.986 5 C 0.172 3.828 6 C 0.087 3.913 7 C -0.155 4.155 8 C -0.081 4.081 9 C -0.167 4.167 10 C 0.070 3.930 11 N -0.496 5.496 12 S 2.782 3.218 13 O -1.019 7.019 14 O -0.976 6.976 15 N -0.992 5.992 16 C 0.097 3.903 17 C 0.242 3.758 18 H 0.037 0.963 19 C -0.162 4.162 20 C -0.506 4.506 21 H 0.060 0.940 22 C 0.034 3.966 23 N -0.932 5.932 24 Si 0.916 3.084 25 H -0.264 1.264 26 H -0.295 1.295 27 H -0.260 1.260 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.055 15.493 9.864 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 C -0.216 4.216 4 N -0.825 5.825 5 C 0.046 3.954 6 C -0.053 4.053 7 C -0.175 4.175 8 C -0.106 4.106 9 C -0.187 4.187 10 C -0.087 4.087 11 N -0.206 5.206 12 S 2.792 3.208 13 O -1.003 7.003 14 O -0.959 6.959 15 N -0.832 5.832 16 C -0.049 4.049 17 C 0.136 3.864 18 H 0.055 0.945 19 C -0.221 4.221 20 C -0.545 4.545 21 H 0.079 0.921 22 C -0.165 4.165 23 N -0.572 5.572 24 Si 0.744 3.256 25 H -0.190 1.190 26 H -0.223 1.223 27 H -0.185 1.185 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.181 0.819 40 H 0.179 0.821 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.094 14.597 9.860 18.990 hybrid contribution -0.329 -0.004 -1.131 1.178 sum 6.765 14.594 8.729 18.301 Atomic orbital electron populations 1.22059 0.93139 1.02664 1.03173 1.20927 0.95971 0.94172 0.85447 1.22392 1.00203 0.94852 1.04138 1.57921 1.64223 1.48683 1.11699 1.20174 0.97521 0.96053 0.81672 1.21785 0.93028 0.94900 0.95572 1.22277 1.02530 0.92480 1.00249 1.21994 0.93214 1.01106 0.94315 1.22500 0.98580 0.97495 1.00111 1.23169 0.98791 0.89929 0.96769 1.67610 1.04221 1.39648 1.09140 1.01777 0.73968 0.72858 0.72149 1.93499 1.73555 1.86435 1.46840 1.93599 1.71386 1.86460 1.44478 1.57527 1.72157 1.40572 1.12938 1.21432 1.00131 0.98045 0.85275 1.18830 0.94522 0.92846 0.80242 0.94548 1.22407 0.99513 0.99263 1.00899 1.21272 0.89860 1.43541 0.99842 0.92144 1.25417 0.95356 0.95339 1.00376 1.69970 1.09429 1.48936 1.28861 0.86368 0.79549 0.79724 0.79940 1.19038 1.22270 1.18480 0.89899 0.91014 0.93466 0.91575 0.94688 0.90241 0.89073 0.89760 0.85959 0.82167 0.81477 0.81937 0.82073 0.92968 0.90432 0.90298 0.91012 0.93922 0.93144 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 8.86 71.98 0.64 -3.62 16 2 C 0.14 4.32 3.19 44.99 0.14 4.47 16 3 C -0.16 -3.76 8.20 71.98 0.59 -3.17 16 4 N -0.99 -32.40 2.77 -497.41 -1.38 -33.77 16 5 C 0.17 4.67 5.33 85.63 0.46 5.13 16 6 C 0.09 2.27 5.80 42.55 0.25 2.51 16 7 C -0.16 -2.87 7.44 22.36 0.17 -2.70 16 8 C -0.08 -1.19 10.18 22.47 0.23 -0.96 16 9 C -0.17 -2.72 10.11 22.36 0.23 -2.49 16 10 C 0.07 1.64 11.18 84.67 0.95 2.59 16 11 N -0.50 -15.05 9.47 -183.89 -1.74 -16.79 16 12 S 2.78 111.83 6.04 -56.49 -0.34 111.49 16 13 O -1.02 -47.26 15.34 -128.00 -1.96 -49.23 16 14 O -0.98 -40.41 14.95 -128.00 -1.91 -42.33 16 15 N -0.99 -40.42 3.12 -520.45 -1.62 -42.04 16 16 C 0.10 3.37 9.90 127.77 1.26 4.63 16 17 C 0.24 11.19 2.21 44.25 0.10 11.29 16 18 H 0.04 1.83 5.97 -2.39 -0.01 1.81 16 19 C -0.16 -6.90 8.65 71.98 0.62 -6.27 16 20 C -0.51 -26.18 8.95 25.60 0.23 -25.95 16 21 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 22 C 0.03 1.87 5.45 84.65 0.46 2.33 16 23 N -0.93 -53.81 13.96 21.45 0.30 -53.51 16 24 Si 0.92 43.18 24.37 68.60 1.67 44.85 16 25 H -0.26 -11.87 6.87 99.48 0.68 -11.18 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.26 -12.09 6.53 99.48 0.65 -11.44 16 28 H 0.08 1.74 6.81 -2.39 -0.02 1.72 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.45 7.03 -2.39 -0.02 2.43 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.66 4.28 -2.39 -0.01 1.65 16 35 H 0.08 2.43 7.70 -2.39 -0.02 2.41 16 36 H 0.12 2.57 6.18 -2.38 -0.01 2.55 16 37 H 0.16 2.09 6.61 -2.91 -0.02 2.07 16 38 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 39 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 2.63 6.43 -2.38 -0.02 2.61 16 43 H 0.08 2.51 7.02 -2.39 -0.02 2.50 16 44 H 0.07 2.83 6.66 -2.39 -0.02 2.82 16 45 H 0.04 1.86 3.27 -2.39 -0.01 1.85 16 46 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -72.42 373.15 0.22 -72.19 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.89 Total: 21.37 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 6.32 Total: -12.23 kcal Atomic # 7 Polarization: -141.68 SS G_CDS: -4.44 Total: -146.12 kcal Atomic # 8 Polarization: -87.68 SS G_CDS: -3.88 Total: -91.55 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.67 Total: 44.85 kcal Atomic # 16 Polarization: 111.83 SS G_CDS: -0.34 Total: 111.49 kcal Total: -72.42 0.22 -72.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558690242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.073 kcal (2) G-P(sol) polarization free energy of solvation -72.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds