Wall clock time and date at job start Sat Apr 11 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46883 * 2 1 4 4 N 1.46500 * 109.46856 * 119.99163 * 2 1 3 5 5 C 1.34952 * 126.03926 * 275.00001 * 4 2 1 6 6 C 1.35321 * 107.74310 * 179.97438 * 5 4 2 7 7 C 1.50707 * 126.03485 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.46854 * 339.99991 * 7 6 5 9 9 C 1.52997 * 109.47046 * 99.99877 * 7 6 5 10 10 N 1.46498 * 109.46609 * 219.99718 * 7 6 5 11 11 S 1.65609 * 119.99641 * 144.99983 * 10 7 6 12 12 O 1.42096 * 104.27679 * 308.92682 * 11 10 7 13 13 O 1.42098 * 104.27552 * 181.07300 * 11 10 7 14 14 C 1.81394 * 104.44753 * 64.99905 * 11 10 7 15 15 C 1.52999 * 109.47186 * 175.71475 * 14 11 10 16 16 C 1.50709 * 115.54893 * 294.38538 * 15 14 11 17 17 H 1.08003 * 119.99821 * 99.47209 * 16 15 14 18 18 C 1.37876 * 119.99941 * 279.19320 * 16 15 14 19 19 N 1.31508 * 119.99862 * 355.79640 * 18 16 15 20 20 Si 1.86803 * 119.99815 * 175.79249 * 18 16 15 21 21 H 1.48498 * 109.46941 * 89.99954 * 20 18 16 22 22 H 1.48497 * 109.47135 * 210.00163 * 20 18 16 23 23 H 1.48506 * 109.46955 * 330.00190 * 20 18 16 24 24 C 1.52996 * 117.51883 * 80.08571 * 15 14 11 25 25 C 1.52996 * 60.00101 * 107.48648 * 24 15 14 26 26 C 1.39867 * 107.92095 * 0.26530 * 6 5 4 27 27 N 1.30836 * 108.20311 * 359.55677 * 26 6 5 28 28 H 1.09005 * 109.46851 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47198 * 300.00476 * 1 2 3 30 30 H 1.09000 * 109.46778 * 60.00755 * 1 2 3 31 31 H 1.08990 * 109.47751 * 239.99661 * 2 1 3 32 32 H 1.09000 * 109.47356 * 179.97438 * 3 2 1 33 33 H 1.09009 * 109.46616 * 299.99241 * 3 2 1 34 34 H 1.08995 * 109.47671 * 59.99279 * 3 2 1 35 35 H 1.08000 * 126.12495 * 359.96793 * 5 4 2 36 36 H 1.09002 * 109.46808 * 179.97438 * 9 7 6 37 37 H 1.09004 * 109.47210 * 299.99699 * 9 7 6 38 38 H 1.08997 * 109.47091 * 59.99784 * 9 7 6 39 39 H 0.97002 * 120.00536 * 325.00219 * 10 7 6 40 40 H 1.09001 * 109.47350 * 55.71637 * 14 11 10 41 41 H 1.08997 * 109.47706 * 295.71676 * 14 11 10 42 42 H 0.97009 * 119.99589 * 185.02222 * 19 18 16 43 43 H 1.09001 * 117.49808 * 214.97482 * 24 15 14 44 44 H 1.09000 * 117.49801 * 359.97438 * 24 15 14 45 45 H 1.09003 * 117.49763 * 252.51409 * 25 24 15 46 46 H 1.08993 * 117.52422 * 107.48632 * 25 24 15 47 47 H 1.08000 * 125.89332 * 179.73571 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 2.1932 -0.1390 2.4155 6 6 2.6558 -1.1050 3.2425 7 6 2.9909 -0.9367 4.7022 8 1 3.1499 0.1195 4.9190 9 6 1.8352 -1.4641 5.5549 10 7 4.2096 -1.6880 5.0131 11 16 5.2840 -1.0987 6.1270 12 8 5.5244 0.2379 5.7090 13 8 6.3307 -2.0595 6.1467 14 6 4.3698 -1.1211 7.6935 15 6 5.2984 -0.6943 8.8321 16 6 6.4419 -1.6315 9.1242 17 1 7.4279 -1.4167 8.7392 18 6 6.2306 -2.7599 9.8877 19 7 5.0521 -2.9758 10.4298 20 14 7.6184 -3.9821 10.1519 21 1 8.3847 -3.6059 11.3669 22 1 7.0523 -5.3439 10.3256 23 1 8.5215 -3.9681 8.9730 24 6 5.5479 0.8038 9.0170 25 6 4.6714 0.0454 10.0156 26 6 2.7731 -2.2857 2.5020 27 7 2.3856 -2.0399 1.2768 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5138 -0.8898 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8902 34 1 1.6765 1.9565 0.8898 35 1 1.9989 0.8892 2.6831 36 1 2.0778 -1.3428 6.6106 37 1 0.9284 -0.9051 5.3235 38 1 1.6762 -2.5204 5.3380 39 1 4.3872 -2.5306 4.5664 40 1 4.0004 -2.1287 7.8843 41 1 3.5282 -0.4310 7.6330 42 1 4.9233 -3.7303 11.0259 43 1 6.5392 1.1116 9.3498 44 1 5.0508 1.4857 8.3271 45 1 3.5973 0.2283 9.9829 46 1 5.0856 -0.1461 11.0054 47 1 3.1206 -3.2368 2.8776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574842183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:50 Heat of formation + Delta-G solvation = 22.161808 kcal Electronic energy + Delta-G solvation = -28372.854624 eV Core-core repulsion = 24492.347239 eV Total energy + Delta-G solvation = -3880.507385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44240 -36.85823 -36.71696 -36.14812 -35.37663 -35.01524 -31.99584 -30.66401 -30.15685 -28.76860 -27.99431 -27.71543 -25.41039 -23.69584 -22.65555 -21.18771 -20.36910 -20.21582 -19.58603 -18.51624 -17.46950 -16.75393 -16.38977 -15.62785 -15.48380 -15.06349 -14.95725 -14.64151 -14.40666 -14.29326 -13.91636 -13.79210 -13.42464 -13.20460 -13.09699 -12.81633 -12.67808 -12.54568 -12.15469 -11.89268 -11.82361 -11.75787 -11.67420 -11.41151 -11.23975 -11.13644 -11.08066 -10.93258 -10.88053 -10.53061 -10.49180 -10.43016 -10.06818 -9.65851 -9.51386 -9.21504 -9.00396 -8.52460 -8.47165 -8.05063 -6.08219 -4.18287 1.13063 1.79133 2.30296 2.70908 3.32867 3.39629 3.51136 3.53239 4.10009 4.42603 4.43842 4.58132 4.61068 4.65964 4.74012 5.01023 5.02515 5.05617 5.15248 5.18099 5.19822 5.24141 5.25685 5.33558 5.41374 5.51557 5.60264 5.66924 5.71783 5.72376 5.82467 5.91328 6.03198 6.24497 6.30498 6.37091 6.45967 6.55704 6.65770 6.72876 6.90617 7.01885 7.25243 7.37996 7.44325 7.61837 7.86385 8.24856 8.87145 9.52132 10.98803 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002864 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.118398 B = 9772.607723 C =10112.045442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.166 4.166 4 N -0.368 5.368 5 C 0.064 3.936 6 C -0.232 4.232 7 C 0.226 3.774 8 H 0.092 0.908 9 C -0.173 4.173 10 N -1.123 6.123 11 S 2.605 3.395 12 O -0.979 6.979 13 O -0.946 6.946 14 C -0.554 4.554 15 C 0.042 3.958 16 C -0.506 4.506 17 H 0.069 0.931 18 C 0.078 3.922 19 N -0.877 5.877 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.214 4.214 25 C -0.137 4.137 26 C 0.059 3.941 27 N -0.298 5.298 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.173 0.827 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.410 0.590 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.262 0.738 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.204 6.466 -17.168 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 C -0.225 4.225 4 N -0.151 5.151 5 C -0.082 4.082 6 C -0.245 4.245 7 C 0.117 3.883 8 H 0.110 0.890 9 C -0.232 4.232 10 N -0.879 5.879 11 S 2.702 3.298 12 O -0.969 6.969 13 O -0.936 6.936 14 C -0.687 4.687 15 C 0.040 3.960 16 C -0.543 4.543 17 H 0.087 0.913 18 C -0.126 4.126 19 N -0.513 5.513 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.252 4.252 25 C -0.177 4.177 26 C -0.127 4.127 27 N -0.119 5.119 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.190 0.810 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.243 0.757 40 H 0.152 0.848 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.699 6.325 -18.563 22.836 hybrid contribution 0.100 -0.925 1.267 1.572 sum -11.599 5.400 -17.296 21.514 Atomic orbital electron populations 1.22242 0.93683 1.03275 1.03059 1.21240 0.94724 0.92804 0.85865 1.22218 1.02612 0.93944 1.03685 1.48763 1.50756 1.07395 1.08220 1.22197 1.01215 0.99524 0.85308 1.20094 1.13434 0.93841 0.97090 1.18856 0.84274 0.95893 0.89276 0.88995 1.22449 0.97943 1.02405 1.00396 1.56031 1.36859 1.35453 1.59549 1.05178 0.74581 0.74100 0.75972 1.93489 1.84065 1.38480 1.80844 1.93566 1.52068 1.61601 1.86357 1.30071 1.10582 1.10319 1.17720 1.18301 0.95705 0.89158 0.92864 1.20538 0.93928 1.05527 1.34319 0.91303 1.24943 0.95602 0.97174 0.94872 1.69997 1.21974 1.29631 1.29704 0.86604 0.82517 0.80438 0.78842 1.20623 1.21032 1.18888 1.23211 1.01237 0.95943 1.04780 1.22525 0.95707 1.03636 0.95806 1.23669 0.99096 0.99315 0.90620 1.77337 1.20880 0.93264 1.20373 0.91646 0.91801 0.90559 0.88095 0.91276 0.90010 0.91349 0.81004 0.91327 0.91715 0.91715 0.75677 0.84773 0.88214 0.92881 0.89587 0.90663 0.91626 0.89457 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.52 37.16 0.35 -0.60 16 2 C 0.16 1.12 3.93 -67.93 -0.27 0.86 16 3 C -0.17 -0.90 8.83 37.16 0.33 -0.57 16 4 N -0.37 -3.93 3.53 -54.86 -0.19 -4.12 16 5 C 0.06 0.68 10.50 -17.22 -0.18 0.50 16 6 C -0.23 -2.81 5.09 -105.05 -0.54 -3.35 16 7 C 0.23 2.89 3.24 -69.08 -0.22 2.67 16 8 H 0.09 1.17 7.47 -51.93 -0.39 0.78 16 9 C -0.17 -1.96 9.46 37.16 0.35 -1.61 16 10 N -1.12 -16.98 5.34 -5.88 -0.03 -17.01 16 11 S 2.60 52.21 5.31 -107.50 -0.57 51.64 16 12 O -0.98 -21.19 17.39 -57.54 -1.00 -22.19 16 13 O -0.95 -22.71 17.21 -57.54 -0.99 -23.70 16 14 C -0.55 -11.30 4.92 37.16 0.18 -11.11 16 15 C 0.04 1.01 1.34 -155.66 -0.21 0.80 16 16 C -0.51 -13.81 7.75 -34.44 -0.27 -14.07 16 17 H 0.07 1.93 7.82 -52.48 -0.41 1.52 16 18 C 0.08 2.14 5.44 -17.82 -0.10 2.04 16 19 N -0.88 -24.01 12.86 55.43 0.71 -23.29 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.26 -6.56 7.11 56.52 0.40 -6.15 16 24 C -0.21 -4.65 9.96 -26.74 -0.27 -4.92 16 25 C -0.14 -3.09 9.40 -26.73 -0.25 -3.35 16 26 C 0.06 0.74 11.28 -17.37 -0.20 0.54 16 27 N -0.30 -3.87 12.58 30.62 0.39 -3.48 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.07 0.34 7.16 -51.93 -0.37 -0.03 16 35 H 0.17 1.33 7.26 -52.49 -0.38 0.94 16 36 H 0.07 0.82 5.92 -51.93 -0.31 0.52 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.41 5.55 7.83 -34.48 -0.27 5.28 16 40 H 0.13 2.82 8.14 -51.92 -0.42 2.40 16 41 H 0.10 1.70 7.01 -51.93 -0.36 1.33 16 42 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 43 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 44 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 47 H 0.18 1.87 7.67 -52.49 -0.40 1.46 16 LS Contribution 398.06 15.07 6.00 6.00 Total: -1.00 -34.72 398.06 -9.51 -44.24 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.53 Total: 7.55 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: -1.28 Total: -32.17 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.87 Total: -47.91 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.99 Total: -45.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 52.21 SS G_CDS: -0.57 Total: 51.64 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.72 -9.51 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574842183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.399 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds