Wall clock time and date at job start Sat Apr 11 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46883 * 2 1 4 4 N 1.46500 * 109.46856 * 119.99163 * 2 1 3 5 5 C 1.34952 * 126.03926 * 275.00001 * 4 2 1 6 6 C 1.35321 * 107.74310 * 179.97438 * 5 4 2 7 7 C 1.50707 * 126.03485 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.46854 * 339.99991 * 7 6 5 9 9 C 1.52997 * 109.47046 * 99.99877 * 7 6 5 10 10 N 1.46498 * 109.46609 * 219.99718 * 7 6 5 11 11 S 1.65609 * 119.99641 * 144.99983 * 10 7 6 12 12 O 1.42096 * 104.27679 * 308.92682 * 11 10 7 13 13 O 1.42098 * 104.27552 * 181.07300 * 11 10 7 14 14 C 1.81394 * 104.44753 * 64.99905 * 11 10 7 15 15 C 1.52999 * 109.47186 * 175.71475 * 14 11 10 16 16 C 1.50709 * 115.54893 * 294.38538 * 15 14 11 17 17 H 1.08003 * 119.99821 * 99.47209 * 16 15 14 18 18 C 1.37876 * 119.99941 * 279.19320 * 16 15 14 19 19 N 1.31508 * 119.99862 * 355.79640 * 18 16 15 20 20 Si 1.86803 * 119.99815 * 175.79249 * 18 16 15 21 21 H 1.48498 * 109.46941 * 89.99954 * 20 18 16 22 22 H 1.48497 * 109.47135 * 210.00163 * 20 18 16 23 23 H 1.48506 * 109.46955 * 330.00190 * 20 18 16 24 24 C 1.52996 * 117.51883 * 80.08571 * 15 14 11 25 25 C 1.52996 * 60.00101 * 107.48648 * 24 15 14 26 26 C 1.39867 * 107.92095 * 0.26530 * 6 5 4 27 27 N 1.30836 * 108.20311 * 359.55677 * 26 6 5 28 28 H 1.09005 * 109.46851 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47198 * 300.00476 * 1 2 3 30 30 H 1.09000 * 109.46778 * 60.00755 * 1 2 3 31 31 H 1.08990 * 109.47751 * 239.99661 * 2 1 3 32 32 H 1.09000 * 109.47356 * 179.97438 * 3 2 1 33 33 H 1.09009 * 109.46616 * 299.99241 * 3 2 1 34 34 H 1.08995 * 109.47671 * 59.99279 * 3 2 1 35 35 H 1.08000 * 126.12495 * 359.96793 * 5 4 2 36 36 H 1.09002 * 109.46808 * 179.97438 * 9 7 6 37 37 H 1.09004 * 109.47210 * 299.99699 * 9 7 6 38 38 H 1.08997 * 109.47091 * 59.99784 * 9 7 6 39 39 H 0.97002 * 120.00536 * 325.00219 * 10 7 6 40 40 H 1.09001 * 109.47350 * 55.71637 * 14 11 10 41 41 H 1.08997 * 109.47706 * 295.71676 * 14 11 10 42 42 H 0.97009 * 119.99589 * 185.02222 * 19 18 16 43 43 H 1.09001 * 117.49808 * 214.97482 * 24 15 14 44 44 H 1.09000 * 117.49801 * 359.97438 * 24 15 14 45 45 H 1.09003 * 117.49763 * 252.51409 * 25 24 15 46 46 H 1.08993 * 117.52422 * 107.48632 * 25 24 15 47 47 H 1.08000 * 125.89332 * 179.73571 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 2.1932 -0.1390 2.4155 6 6 2.6558 -1.1050 3.2425 7 6 2.9909 -0.9367 4.7022 8 1 3.1499 0.1195 4.9190 9 6 1.8352 -1.4641 5.5549 10 7 4.2096 -1.6880 5.0131 11 16 5.2840 -1.0987 6.1270 12 8 5.5244 0.2379 5.7090 13 8 6.3307 -2.0595 6.1467 14 6 4.3698 -1.1211 7.6935 15 6 5.2984 -0.6943 8.8321 16 6 6.4419 -1.6315 9.1242 17 1 7.4279 -1.4167 8.7392 18 6 6.2306 -2.7599 9.8877 19 7 5.0521 -2.9758 10.4298 20 14 7.6184 -3.9821 10.1519 21 1 8.3847 -3.6059 11.3669 22 1 7.0523 -5.3439 10.3256 23 1 8.5215 -3.9681 8.9730 24 6 5.5479 0.8038 9.0170 25 6 4.6714 0.0454 10.0156 26 6 2.7731 -2.2857 2.5020 27 7 2.3856 -2.0399 1.2768 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5138 -0.8898 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8902 34 1 1.6765 1.9565 0.8898 35 1 1.9989 0.8892 2.6831 36 1 2.0778 -1.3428 6.6106 37 1 0.9284 -0.9051 5.3235 38 1 1.6762 -2.5204 5.3380 39 1 4.3872 -2.5306 4.5664 40 1 4.0004 -2.1287 7.8843 41 1 3.5282 -0.4310 7.6330 42 1 4.9233 -3.7303 11.0259 43 1 6.5392 1.1116 9.3498 44 1 5.0508 1.4857 8.3271 45 1 3.5973 0.2283 9.9829 46 1 5.0856 -0.1461 11.0054 47 1 3.1206 -3.2368 2.8776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574842183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:50 Heat of formation + Delta-G solvation = -1.440808 kcal Electronic energy + Delta-G solvation = -28373.878110 eV Core-core repulsion = 24492.347239 eV Total energy + Delta-G solvation = -3881.530871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.27499 -38.52137 -38.01881 -37.54631 -36.72987 -36.17516 -34.03817 -31.64849 -30.99942 -30.02709 -29.24723 -28.17703 -27.43208 -24.50531 -23.52864 -22.93655 -21.51902 -21.16593 -20.95480 -20.01943 -18.58938 -18.32978 -17.94229 -16.84325 -16.70413 -16.53463 -16.23893 -15.76079 -15.69983 -15.56188 -15.07362 -14.93017 -14.84323 -14.23703 -13.82568 -13.77706 -13.62588 -13.56188 -13.24380 -13.11750 -13.08460 -13.03603 -12.87499 -12.85547 -12.81691 -12.49744 -12.39854 -12.37298 -12.30632 -12.16705 -11.98874 -11.84020 -11.47556 -11.37837 -10.93527 -10.54359 -10.46113 -10.34323 -9.82713 -9.33445 -8.14191 -6.27492 -0.44301 0.96286 1.38166 1.41977 1.54695 1.60044 1.76825 2.15767 2.43148 3.03021 3.12652 3.40133 3.46617 3.56492 3.87741 3.93786 3.97176 4.07608 4.11671 4.16980 4.30640 4.33547 4.44283 4.53493 4.54978 4.63234 4.66277 4.72204 4.81137 4.83634 4.88965 4.92291 4.95322 5.01505 5.07351 5.18995 5.23834 5.27279 5.36597 5.47044 5.52340 5.65559 5.68145 5.78142 6.16947 6.21657 6.28225 6.75773 6.77675 7.43608 8.92050 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002864 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.118398 B = 9772.607723 C =10112.045442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 C -0.161 4.161 4 N -0.366 5.366 5 C 0.071 3.929 6 C -0.250 4.250 7 C 0.223 3.777 8 H 0.096 0.904 9 C -0.171 4.171 10 N -1.111 6.111 11 S 2.621 3.379 12 O -0.996 6.996 13 O -0.994 6.994 14 C -0.548 4.548 15 C 0.009 3.991 16 C -0.523 4.523 17 H 0.047 0.953 18 C 0.041 3.959 19 N -0.892 5.892 20 Si 0.930 3.070 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.278 1.278 24 C -0.203 4.203 25 C -0.134 4.134 26 C 0.048 3.952 27 N -0.330 5.330 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.203 0.797 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.418 0.582 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.264 0.736 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 7.878 -18.152 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 C -0.219 4.219 4 N -0.149 5.149 5 C -0.077 4.077 6 C -0.264 4.264 7 C 0.115 3.885 8 H 0.114 0.886 9 C -0.230 4.230 10 N -0.870 5.870 11 S 2.718 3.282 12 O -0.986 6.986 13 O -0.984 6.984 14 C -0.681 4.681 15 C 0.007 3.993 16 C -0.561 4.561 17 H 0.065 0.935 18 C -0.161 4.161 19 N -0.529 5.529 20 Si 0.756 3.244 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.203 1.203 24 C -0.240 4.240 25 C -0.173 4.173 26 C -0.138 4.138 27 N -0.151 5.151 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.219 0.781 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.144 0.856 41 H 0.154 0.846 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.602 7.734 -19.551 25.042 hybrid contribution 0.648 -1.300 1.465 2.063 sum -12.954 6.434 -18.086 23.159 Atomic orbital electron populations 1.22196 0.92347 1.02542 1.04430 1.21590 0.95759 0.93565 0.84588 1.22218 1.01667 0.92715 1.05327 1.49102 1.49841 1.06747 1.09187 1.22664 0.99696 1.00461 0.84889 1.20078 1.15064 0.94324 0.96884 1.19065 0.83388 0.95790 0.90212 0.88579 1.22442 0.98172 1.02849 0.99552 1.55618 1.37200 1.35974 1.58237 1.04406 0.74396 0.73194 0.76187 1.93457 1.84667 1.39311 1.81152 1.93499 1.54926 1.62829 1.87149 1.29939 1.10936 1.10716 1.16480 1.18426 0.96086 0.89942 0.94870 1.20705 0.94332 1.06720 1.34332 0.93523 1.25448 0.97318 0.98304 0.95033 1.70031 1.22639 1.30084 1.30118 0.85974 0.80612 0.79434 0.78411 1.19587 1.20007 1.20326 1.23270 1.01187 0.95026 1.04499 1.22474 0.97028 1.03339 0.94429 1.23906 0.99166 1.00037 0.90698 1.77281 1.22019 0.94955 1.20844 0.93386 0.91472 0.88118 0.88455 0.92685 0.87648 0.90461 0.78052 0.91952 0.89509 0.91645 0.74724 0.85619 0.84555 0.92697 0.90102 0.88043 0.89220 0.91641 0.79392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.52 71.98 0.69 -0.78 16 2 C 0.15 1.83 3.93 44.99 0.18 2.00 16 3 C -0.16 -1.31 8.83 71.98 0.64 -0.67 16 4 N -0.37 -7.23 3.53 -327.49 -1.15 -8.39 16 5 C 0.07 1.34 10.50 83.54 0.88 2.21 16 6 C -0.25 -5.66 5.09 -20.14 -0.10 -5.76 16 7 C 0.22 5.28 3.24 44.25 0.14 5.42 16 8 H 0.10 2.20 7.47 -2.39 -0.02 2.18 16 9 C -0.17 -3.48 9.46 71.98 0.68 -2.80 16 10 N -1.11 -32.56 5.34 -172.52 -0.92 -33.48 16 11 S 2.62 103.88 5.31 -56.49 -0.30 103.58 16 12 O -1.00 -42.08 17.39 -127.65 -2.22 -44.30 16 13 O -0.99 -48.68 17.21 -127.65 -2.20 -50.88 16 14 C -0.55 -21.69 4.92 71.98 0.35 -21.34 16 15 C 0.01 0.42 1.34 -52.93 -0.07 0.35 16 16 C -0.52 -28.98 7.75 25.60 0.20 -28.79 16 17 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 18 C 0.04 2.27 5.44 84.66 0.46 2.73 16 19 N -0.89 -48.79 12.86 21.45 0.28 -48.51 16 20 Si 0.93 44.57 29.54 68.60 2.03 46.59 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 24 C -0.20 -8.51 9.96 30.59 0.30 -8.21 16 25 C -0.13 -5.85 9.40 30.59 0.29 -5.56 16 26 C 0.05 1.14 11.28 85.24 0.96 2.10 16 27 N -0.33 -8.36 12.58 -57.03 -0.72 -9.08 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.08 0.50 7.16 -2.39 -0.02 0.49 16 35 H 0.20 2.40 7.26 -2.91 -0.02 2.38 16 36 H 0.06 1.34 5.92 -2.39 -0.01 1.33 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.42 11.15 7.83 -96.74 -0.76 10.39 16 40 H 0.13 5.22 8.14 -2.39 -0.02 5.20 16 41 H 0.14 4.26 7.01 -2.39 -0.02 4.25 16 42 H 0.26 13.76 8.32 -92.70 -0.77 12.99 16 43 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 44 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 45 H 0.09 3.44 8.14 -2.39 -0.02 3.43 16 46 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 47 H 0.19 3.88 7.67 -2.91 -0.02 3.85 16 Total: -1.00 -75.07 398.06 0.59 -74.48 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.21 Total: 29.07 kcal Atomic # 6 Polarization: -64.68 SS G_CDS: 5.59 Total: -59.08 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -2.52 Total: -99.46 kcal Atomic # 8 Polarization: -90.76 SS G_CDS: -4.42 Total: -95.18 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 103.88 SS G_CDS: -0.30 Total: 103.58 kcal Total: -75.07 0.59 -74.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574842183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.041 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds