Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47066 * 2 1 4 4 C 1.46501 * 119.99987 * 275.00163 * 3 2 1 5 5 C 1.50699 * 109.46744 * 285.24044 * 4 3 2 6 6 H 1.08008 * 120.00297 * 1.40197 * 5 4 3 7 7 C 1.37882 * 120.00070 * 181.39326 * 5 4 3 8 8 N 1.31512 * 119.99705 * 5.12720 * 7 5 4 9 9 Si 1.86799 * 120.00174 * 185.12147 * 7 5 4 10 10 H 1.48503 * 109.46970 * 95.00819 * 9 7 5 11 11 H 1.48505 * 109.46983 * 215.00724 * 9 7 5 12 12 H 1.48494 * 109.47326 * 335.00655 * 9 7 5 13 13 S 1.65607 * 120.00154 * 94.99794 * 3 2 1 14 14 O 1.42103 * 106.39748 * 338.29715 * 13 3 2 15 15 O 1.42094 * 106.40094 * 205.37791 * 13 3 2 16 16 N 1.65597 * 107.21650 * 91.83370 * 13 3 2 17 17 C 1.46499 * 120.00445 * 269.00804 * 16 13 3 18 18 C 1.50708 * 109.46955 * 267.06483 * 17 16 13 19 19 C 1.38231 * 119.61837 * 93.64945 * 18 17 16 20 20 C 1.38624 * 119.15910 * 179.74919 * 19 18 17 21 21 C 1.38675 * 118.42093 * 0.47066 * 20 19 18 22 22 C 1.38184 * 119.16415 * 359.50452 * 21 20 19 23 23 N 1.31855 * 119.61448 * 273.62637 * 18 17 16 24 24 C 1.46502 * 119.99925 * 89.00866 * 16 13 3 25 25 C 1.52996 * 109.47321 * 117.49301 * 24 16 13 26 26 C 1.52999 * 109.47256 * 237.49879 * 24 16 13 27 27 H 1.08995 * 109.46955 * 300.00024 * 1 2 3 28 28 H 1.09003 * 109.47088 * 60.00177 * 1 2 3 29 29 H 1.09006 * 109.46804 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47524 * 239.99834 * 2 1 3 31 31 H 1.09003 * 109.47088 * 119.99823 * 2 1 3 32 32 H 1.08990 * 109.47408 * 45.24409 * 4 3 2 33 33 H 1.09002 * 109.47128 * 165.24638 * 4 3 2 34 34 H 0.97001 * 120.00139 * 179.97438 * 8 7 5 35 35 H 1.08991 * 109.47385 * 147.06246 * 17 16 13 36 36 H 1.09002 * 109.46845 * 27.05713 * 17 16 13 37 37 H 1.07999 * 120.41425 * 359.95001 * 19 18 17 38 38 H 1.07998 * 120.79131 * 180.23039 * 20 19 18 39 39 H 1.07994 * 120.41719 * 179.78933 * 21 20 19 40 40 H 1.07993 * 119.61612 * 180.25288 * 22 21 20 41 41 H 1.09004 * 109.47194 * 357.49265 * 24 16 13 42 42 H 1.09008 * 109.47228 * 68.66611 * 25 24 16 43 43 H 1.09004 * 109.47317 * 188.66181 * 25 24 16 44 44 H 1.08996 * 109.47289 * 308.66385 * 25 24 16 45 45 H 1.09001 * 109.47263 * 64.71351 * 26 24 16 46 46 H 1.09002 * 109.47239 * 184.72229 * 26 24 16 47 47 H 1.09003 * 109.46849 * 304.71401 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.3705 1.6034 -2.0028 6 1 3.9633 0.8032 -1.5845 7 6 3.7230 2.1623 -3.2129 8 7 3.0626 3.2019 -3.6742 9 14 5.1385 1.4431 -4.1971 10 1 4.6079 0.4827 -5.1978 11 1 5.8618 2.5363 -4.8951 12 1 6.0709 0.7388 -3.2808 13 16 2.4121 2.1203 1.4287 14 8 1.7205 1.4142 2.4496 15 8 2.2638 3.5168 1.2123 16 7 4.0261 1.8561 1.6886 17 6 4.4632 0.6836 2.4504 18 6 4.6125 1.0554 3.9032 19 6 3.5570 0.8521 4.7724 20 6 3.7065 1.1927 6.1078 21 6 4.9140 1.7367 6.5190 22 6 5.9246 1.9104 5.5927 23 7 5.7485 1.5706 4.3305 24 6 5.0170 2.7951 1.1568 25 6 5.7883 3.4325 2.3142 26 6 5.9915 2.0462 0.2455 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.2690 1.9512 -1.8741 33 1 2.2748 3.1730 -1.0596 34 1 3.3108 3.5954 -4.5254 35 1 5.4211 0.3357 2.0641 36 1 3.7222 -0.1099 2.3528 37 1 2.6289 0.4302 4.4162 38 1 2.9004 1.0416 6.8105 39 1 5.0643 2.0168 7.5511 40 1 6.8693 2.3296 5.9058 41 1 4.5104 3.5731 0.5856 42 1 6.4157 2.6795 2.7911 43 1 6.4148 4.2389 1.9329 44 1 5.0840 3.8332 3.0432 45 1 5.4556 1.6632 -0.6229 46 1 6.7772 2.7265 -0.0832 47 1 6.4361 1.2155 0.7936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575970178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = -36.050696 kcal Electronic energy + Delta-G solvation = -30237.960443 eV Core-core repulsion = 26354.928774 eV Total energy + Delta-G solvation = -3883.031669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23694 -37.07607 -36.73246 -36.02250 -35.20944 -32.72576 -32.56393 -32.38616 -30.21883 -29.91870 -26.76515 -26.51836 -26.22221 -23.47091 -23.19891 -22.23439 -21.65431 -20.40570 -18.36144 -17.32403 -17.06228 -16.74844 -16.38524 -16.02240 -15.73515 -15.42021 -14.91726 -14.39767 -14.03988 -13.93604 -13.64941 -13.54309 -13.28224 -13.15072 -12.85669 -12.77758 -12.29915 -12.11486 -12.02727 -11.93740 -11.77105 -11.69922 -11.46277 -11.36065 -11.34399 -11.08668 -10.96052 -10.83364 -10.71264 -10.55221 -10.34244 -10.29871 -10.00091 -9.79435 -9.69192 -9.31096 -8.99667 -8.71817 -8.48089 -8.02291 -6.11261 -4.16397 1.00291 1.28130 1.36118 3.24387 3.32660 3.33356 3.43616 3.84216 4.12564 4.32084 4.36066 4.75178 4.82815 4.91753 5.04350 5.10782 5.22283 5.26186 5.39849 5.49365 5.55460 5.68402 5.73965 5.78082 5.80456 5.83263 5.87203 6.02508 6.10911 6.13946 6.19459 6.23704 6.27016 6.33683 6.41594 6.56684 6.66740 6.70002 6.75250 6.95093 7.01290 7.04589 7.36337 7.45271 7.65350 7.86166 8.01615 8.16931 8.87751 9.48357 10.96823 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.004790 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.083872 B = 5843.521603 C = 6951.699549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.533 4.533 6 H 0.066 0.934 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.271 1.271 13 S 2.779 3.221 14 O -0.996 6.996 15 O -0.979 6.979 16 N -0.990 5.990 17 C 0.176 3.824 18 C 0.109 3.891 19 C -0.151 4.151 20 C -0.082 4.082 21 C -0.176 4.176 22 C 0.089 3.911 23 N -0.462 5.462 24 C 0.152 3.848 25 C -0.167 4.167 26 C -0.168 4.168 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.150 0.850 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.041 0.959 45 H 0.088 0.912 46 H 0.056 0.944 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.372 -6.010 15.414 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.123 3.877 5 C -0.572 4.572 6 H 0.084 0.916 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.196 1.196 13 S 2.789 3.211 14 O -0.980 6.980 15 O -0.963 6.963 16 N -0.827 5.827 17 C 0.049 3.951 18 C -0.030 4.030 19 C -0.171 4.171 20 C -0.108 4.108 21 C -0.197 4.197 22 C -0.069 4.069 23 N -0.172 5.172 24 C 0.047 3.953 25 C -0.226 4.226 26 C -0.226 4.226 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.168 0.832 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.440 -5.249 15.185 16.431 hybrid contribution 0.317 -0.517 -0.240 0.652 sum 3.757 -5.767 14.944 16.453 Atomic orbital electron populations 1.22192 0.97032 1.01313 1.02296 1.20971 0.93577 0.82950 1.02087 1.57777 1.78305 1.22966 1.24138 1.19184 0.97341 0.92238 0.78956 1.21496 1.11380 1.19627 1.04743 0.91579 1.24940 0.96702 0.94587 0.97554 1.69947 1.41002 1.21316 1.20352 0.86634 0.82384 0.78858 0.80434 1.20795 1.21219 1.19563 1.01968 0.72649 0.73479 0.72967 1.93488 1.72043 1.75307 1.57209 1.93570 1.85288 1.31279 1.86149 1.58118 1.25426 1.33695 1.65426 1.19940 1.03022 0.87442 0.84705 1.21772 0.89339 0.94705 0.97188 1.22340 1.00620 1.00363 0.93772 1.21606 0.97287 0.95878 0.96061 1.22111 0.94872 1.01525 1.01143 1.22718 0.98799 0.96781 0.88578 1.67481 1.23957 1.09419 1.16303 1.20770 0.89843 0.90547 0.94138 1.22443 1.00563 1.01364 0.98215 1.22275 0.99227 1.00194 1.00911 0.92809 0.92100 0.92391 0.89986 0.92091 0.95016 0.93028 0.92636 0.88393 0.89098 0.83230 0.85038 0.85214 0.83046 0.88481 0.88989 0.92866 0.94021 0.89321 0.92467 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.13 2.19 6.00 -4.04 -0.02 2.17 16 3 N -0.99 -19.86 2.87 -115.66 -0.33 -20.19 16 4 C 0.24 5.91 5.53 -5.19 -0.03 5.88 16 5 C -0.53 -13.21 7.93 -34.44 -0.27 -13.49 16 6 H 0.07 1.57 6.74 -52.48 -0.35 1.22 16 7 C 0.07 1.70 5.45 -17.82 -0.10 1.61 16 8 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 9 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 13 S 2.78 54.89 6.01 -107.50 -0.65 54.24 16 14 O -1.00 -18.88 14.20 -57.17 -0.81 -19.69 16 15 O -0.98 -23.07 15.31 -57.17 -0.88 -23.94 16 16 N -0.99 -16.97 2.77 -108.57 -0.30 -17.27 16 17 C 0.18 2.52 5.26 -5.19 -0.03 2.49 16 18 C 0.11 1.55 5.84 -82.58 -0.48 1.06 16 19 C -0.15 -2.01 9.16 -39.44 -0.36 -2.38 16 20 C -0.08 -0.91 10.18 -39.28 -0.40 -1.31 16 21 C -0.18 -1.77 10.11 -39.44 -0.40 -2.17 16 22 C 0.09 0.99 11.18 -17.55 -0.20 0.79 16 23 N -0.46 -6.26 6.92 -9.47 -0.07 -6.33 16 24 C 0.15 2.68 3.22 -67.93 -0.22 2.46 16 25 C -0.17 -2.61 7.88 37.16 0.29 -2.32 16 26 C -0.17 -2.79 9.21 37.16 0.34 -2.45 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16 31 H 0.06 0.88 7.47 -51.93 -0.39 0.49 16 32 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.05 1.39 6.84 -51.93 -0.36 1.04 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.10 1.30 6.22 -51.93 -0.32 0.97 16 36 H 0.09 1.16 7.48 -51.93 -0.39 0.77 16 37 H 0.15 2.04 6.82 -52.49 -0.36 1.68 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.10 1.97 6.98 -51.93 -0.36 1.61 16 42 H 0.09 1.36 5.45 -51.92 -0.28 1.08 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.71 5.72 -51.93 -0.30 1.41 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -30.50 382.82 -10.25 -40.75 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.21 Total: 5.56 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.49 Total: -9.89 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: 0.04 Total: -67.85 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.69 Total: -43.64 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 54.89 SS G_CDS: -0.65 Total: 54.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.50 -10.25 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575970178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.696 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds