Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47066 * 2 1 4 4 C 1.46501 * 119.99987 * 275.00163 * 3 2 1 5 5 C 1.50699 * 109.46744 * 285.24044 * 4 3 2 6 6 H 1.08008 * 120.00297 * 1.40197 * 5 4 3 7 7 C 1.37882 * 120.00070 * 181.39326 * 5 4 3 8 8 N 1.31512 * 119.99705 * 5.12720 * 7 5 4 9 9 Si 1.86799 * 120.00174 * 185.12147 * 7 5 4 10 10 H 1.48503 * 109.46970 * 95.00819 * 9 7 5 11 11 H 1.48505 * 109.46983 * 215.00724 * 9 7 5 12 12 H 1.48494 * 109.47326 * 335.00655 * 9 7 5 13 13 S 1.65607 * 120.00154 * 94.99794 * 3 2 1 14 14 O 1.42103 * 106.39748 * 338.29715 * 13 3 2 15 15 O 1.42094 * 106.40094 * 205.37791 * 13 3 2 16 16 N 1.65597 * 107.21650 * 91.83370 * 13 3 2 17 17 C 1.46499 * 120.00445 * 269.00804 * 16 13 3 18 18 C 1.50708 * 109.46955 * 267.06483 * 17 16 13 19 19 C 1.38231 * 119.61837 * 93.64945 * 18 17 16 20 20 C 1.38624 * 119.15910 * 179.74919 * 19 18 17 21 21 C 1.38675 * 118.42093 * 0.47066 * 20 19 18 22 22 C 1.38184 * 119.16415 * 359.50452 * 21 20 19 23 23 N 1.31855 * 119.61448 * 273.62637 * 18 17 16 24 24 C 1.46502 * 119.99925 * 89.00866 * 16 13 3 25 25 C 1.52996 * 109.47321 * 117.49301 * 24 16 13 26 26 C 1.52999 * 109.47256 * 237.49879 * 24 16 13 27 27 H 1.08995 * 109.46955 * 300.00024 * 1 2 3 28 28 H 1.09003 * 109.47088 * 60.00177 * 1 2 3 29 29 H 1.09006 * 109.46804 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47524 * 239.99834 * 2 1 3 31 31 H 1.09003 * 109.47088 * 119.99823 * 2 1 3 32 32 H 1.08990 * 109.47408 * 45.24409 * 4 3 2 33 33 H 1.09002 * 109.47128 * 165.24638 * 4 3 2 34 34 H 0.97001 * 120.00139 * 179.97438 * 8 7 5 35 35 H 1.08991 * 109.47385 * 147.06246 * 17 16 13 36 36 H 1.09002 * 109.46845 * 27.05713 * 17 16 13 37 37 H 1.07999 * 120.41425 * 359.95001 * 19 18 17 38 38 H 1.07998 * 120.79131 * 180.23039 * 20 19 18 39 39 H 1.07994 * 120.41719 * 179.78933 * 21 20 19 40 40 H 1.07993 * 119.61612 * 180.25288 * 22 21 20 41 41 H 1.09004 * 109.47194 * 357.49265 * 24 16 13 42 42 H 1.09008 * 109.47228 * 68.66611 * 25 24 16 43 43 H 1.09004 * 109.47317 * 188.66181 * 25 24 16 44 44 H 1.08996 * 109.47289 * 308.66385 * 25 24 16 45 45 H 1.09001 * 109.47263 * 64.71351 * 26 24 16 46 46 H 1.09002 * 109.47239 * 184.72229 * 26 24 16 47 47 H 1.09003 * 109.46849 * 304.71401 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.3705 1.6034 -2.0028 6 1 3.9633 0.8032 -1.5845 7 6 3.7230 2.1623 -3.2129 8 7 3.0626 3.2019 -3.6742 9 14 5.1385 1.4431 -4.1971 10 1 4.6079 0.4827 -5.1978 11 1 5.8618 2.5363 -4.8951 12 1 6.0709 0.7388 -3.2808 13 16 2.4121 2.1203 1.4287 14 8 1.7205 1.4142 2.4496 15 8 2.2638 3.5168 1.2123 16 7 4.0261 1.8561 1.6886 17 6 4.4632 0.6836 2.4504 18 6 4.6125 1.0554 3.9032 19 6 3.5570 0.8521 4.7724 20 6 3.7065 1.1927 6.1078 21 6 4.9140 1.7367 6.5190 22 6 5.9246 1.9104 5.5927 23 7 5.7485 1.5706 4.3305 24 6 5.0170 2.7951 1.1568 25 6 5.7883 3.4325 2.3142 26 6 5.9915 2.0462 0.2455 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.2690 1.9512 -1.8741 33 1 2.2748 3.1730 -1.0596 34 1 3.3108 3.5954 -4.5254 35 1 5.4211 0.3357 2.0641 36 1 3.7222 -0.1099 2.3528 37 1 2.6289 0.4302 4.4162 38 1 2.9004 1.0416 6.8105 39 1 5.0643 2.0168 7.5511 40 1 6.8693 2.3296 5.9058 41 1 4.5104 3.5731 0.5856 42 1 6.4157 2.6795 2.7911 43 1 6.4148 4.2389 1.9329 44 1 5.0840 3.8332 3.0432 45 1 5.4556 1.6632 -0.6229 46 1 6.7772 2.7265 -0.0832 47 1 6.4361 1.2155 0.7936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575970178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = -54.792100 kcal Electronic energy + Delta-G solvation = -30238.773131 eV Core-core repulsion = 26354.928774 eV Total energy + Delta-G solvation = -3883.844357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16292 -38.48006 -38.25142 -37.65186 -36.87577 -34.63497 -33.66007 -33.31625 -31.49961 -31.35437 -28.50367 -27.93240 -27.34466 -24.95160 -24.35156 -23.24233 -23.21098 -21.80109 -19.79885 -18.82310 -18.56011 -18.32363 -17.83299 -17.28033 -16.94036 -16.49986 -16.34787 -16.00422 -15.52913 -15.11727 -14.99165 -14.73892 -14.67105 -14.51418 -14.04244 -13.96364 -13.77219 -13.61832 -13.49668 -13.40561 -13.35697 -13.09638 -13.01551 -12.73370 -12.67209 -12.62163 -12.57838 -12.28669 -12.24955 -12.15584 -11.88794 -11.68900 -11.56751 -11.49535 -10.70550 -10.53881 -10.35915 -9.98228 -9.92358 -9.68181 -8.11671 -6.22930 -0.36950 0.23293 0.43469 1.45974 1.47890 1.57521 1.97641 2.45981 2.52857 2.96214 3.20665 3.36757 3.38373 3.69348 3.93337 4.01986 4.09095 4.23545 4.30253 4.32400 4.35925 4.45021 4.48034 4.50391 4.59612 4.72720 4.74397 4.80075 4.88254 4.93718 4.97463 5.01806 5.13299 5.17794 5.24814 5.28678 5.32881 5.36401 5.42322 5.55173 5.59033 5.63737 5.69270 5.83778 5.90001 6.02177 6.17587 6.88513 7.10390 7.45829 8.97149 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.004790 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.083872 B = 5843.521603 C = 6951.699549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.994 5.994 4 C 0.261 3.739 5 C -0.524 4.524 6 H 0.079 0.921 7 C 0.013 3.987 8 N -0.931 5.931 9 Si 0.953 3.047 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.253 1.253 13 S 2.787 3.213 14 O -0.989 6.989 15 O -1.024 7.024 16 N -0.985 5.985 17 C 0.170 3.830 18 C 0.089 3.911 19 C -0.170 4.170 20 C -0.087 4.087 21 C -0.167 4.167 22 C 0.080 3.920 23 N -0.480 5.480 24 C 0.151 3.849 25 C -0.154 4.154 26 C -0.160 4.160 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.011 0.989 33 H 0.014 0.986 34 H 0.263 0.737 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.180 0.820 41 H 0.059 0.941 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.246 -7.972 17.519 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.835 5.835 4 C 0.137 3.863 5 C -0.563 4.563 6 H 0.097 0.903 7 C -0.186 4.186 8 N -0.571 5.571 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.177 1.177 13 S 2.798 3.202 14 O -0.973 6.973 15 O -1.008 7.008 16 N -0.824 5.824 17 C 0.045 3.955 18 C -0.049 4.049 19 C -0.191 4.191 20 C -0.113 4.113 21 C -0.186 4.186 22 C -0.077 4.077 23 N -0.190 5.190 24 C 0.045 3.955 25 C -0.213 4.213 26 C -0.218 4.218 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.029 0.971 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.158 0.842 38 H 0.173 0.827 39 H 0.183 0.817 40 H 0.197 0.803 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.298 -7.253 17.313 19.504 hybrid contribution -0.280 0.085 -0.724 0.781 sum 5.018 -7.168 16.590 18.756 Atomic orbital electron populations 1.22181 0.96102 1.03207 1.01112 1.21277 0.94495 0.81202 1.03461 1.57696 1.79066 1.24157 1.22603 1.18699 0.96508 0.90745 0.80299 1.21736 1.11061 1.19145 1.04403 0.90302 1.25750 0.99225 0.94814 0.98786 1.70095 1.43107 1.23077 1.20868 0.85624 0.79591 0.77938 0.79051 1.20503 1.21759 1.17664 1.01543 0.73356 0.72463 0.72813 1.93488 1.72448 1.74794 1.56561 1.93510 1.86285 1.34287 1.86706 1.57870 1.24094 1.34699 1.65691 1.20194 1.03931 0.86384 0.85033 1.21652 0.90128 0.96244 0.96916 1.22387 1.00199 1.01425 0.95040 1.21965 0.98592 0.95220 0.95550 1.22506 0.93798 0.99690 1.02650 1.23285 1.00303 0.96141 0.88006 1.67415 1.23790 1.09997 1.17767 1.20743 0.89795 0.90119 0.94857 1.22350 1.00096 1.01850 0.96985 1.22185 0.98849 1.01005 0.99803 0.93503 0.93763 0.88948 0.89921 0.89295 0.97090 0.96792 0.92817 0.87144 0.87845 0.84166 0.82679 0.81747 0.80303 0.92268 0.87549 0.91808 0.95502 0.91962 0.91454 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.05 10.24 71.98 0.74 -4.31 16 2 C 0.12 3.96 6.00 86.38 0.52 4.48 16 3 N -0.99 -40.73 2.87 -519.85 -1.49 -42.22 16 4 C 0.26 13.19 5.53 85.63 0.47 13.67 16 5 C -0.52 -26.41 7.93 25.60 0.20 -26.21 16 6 H 0.08 3.71 6.74 -2.91 -0.02 3.69 16 7 C 0.01 0.71 5.45 84.66 0.46 1.17 16 8 N -0.93 -53.82 13.29 21.45 0.29 -53.54 16 9 Si 0.95 41.20 29.54 68.60 2.03 43.23 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 13 S 2.79 112.54 6.01 -56.49 -0.34 112.20 16 14 O -0.99 -37.31 14.20 -128.00 -1.82 -39.13 16 15 O -1.02 -50.85 15.31 -128.00 -1.96 -52.81 16 16 N -0.98 -33.62 2.77 -497.41 -1.38 -35.00 16 17 C 0.17 4.64 5.26 85.64 0.45 5.09 16 18 C 0.09 2.38 5.84 42.56 0.25 2.63 16 19 C -0.17 -4.30 9.16 22.36 0.20 -4.10 16 20 C -0.09 -1.72 10.18 22.47 0.23 -1.49 16 21 C -0.17 -2.77 10.11 22.36 0.23 -2.54 16 22 C 0.08 1.54 11.18 84.67 0.95 2.48 16 23 N -0.48 -11.95 6.92 -183.87 -1.27 -13.22 16 24 C 0.15 5.31 3.22 44.99 0.14 5.46 16 25 C -0.15 -4.69 7.88 71.98 0.57 -4.12 16 26 C -0.16 -5.15 9.21 71.98 0.66 -4.49 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.46 8.09 -2.39 -0.02 1.44 16 29 H 0.09 2.13 8.14 -2.38 -0.02 2.12 16 30 H 0.08 2.70 7.89 -2.39 -0.02 2.68 16 31 H 0.09 2.41 7.47 -2.39 -0.02 2.39 16 32 H 0.01 0.59 8.09 -2.39 -0.02 0.58 16 33 H 0.01 0.81 6.84 -2.39 -0.02 0.80 16 34 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.11 2.69 6.22 -2.39 -0.01 2.67 16 36 H 0.10 2.49 7.48 -2.39 -0.02 2.47 16 37 H 0.14 3.71 6.82 -2.91 -0.02 3.69 16 38 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.06 2.54 6.98 -2.39 -0.02 2.52 16 42 H 0.11 2.94 5.45 -2.38 -0.01 2.93 16 43 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 2.35 5.72 -2.39 -0.01 2.33 16 46 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.07 2.03 6.40 -2.39 -0.02 2.01 16 Total: -1.00 -68.52 382.82 1.09 -67.43 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.96 Total: 25.34 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 6.07 Total: -12.28 kcal Atomic # 7 Polarization: -140.12 SS G_CDS: -3.86 Total: -143.98 kcal Atomic # 8 Polarization: -88.17 SS G_CDS: -3.78 Total: -91.94 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 112.54 SS G_CDS: -0.34 Total: 112.20 kcal Total: -68.52 1.09 -67.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575970178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.642 kcal (2) G-P(sol) polarization free energy of solvation -68.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds