Wall clock time and date at job start Sat Apr 11 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29110 * 126.00938 * 2 1 4 4 N 1.29021 * 110.25520 * 180.02562 * 3 2 1 5 5 C 1.32912 * 108.63825 * 0.02562 * 4 3 2 6 6 C 1.34403 * 126.00106 * 180.02562 * 2 1 3 7 7 C 1.50527 * 129.25721 * 359.75652 * 6 2 1 8 8 C 1.53430 * 108.32361 * 196.54650 * 7 6 2 9 9 C 1.53108 * 109.55091 * 310.27242 * 8 7 6 10 10 H 1.08998 * 109.43649 * 310.05576 * 9 8 7 11 11 N 1.46500 * 109.45564 * 190.10278 * 9 8 7 12 12 C 1.34779 * 120.00146 * 154.89362 * 11 9 8 13 13 O 1.21590 * 119.99615 * 359.97438 * 12 11 9 14 14 N 1.34774 * 120.00345 * 179.72287 * 12 11 9 15 15 C 1.39237 * 120.00211 * 175.98493 * 14 12 11 16 16 C 1.39478 * 119.83722 * 215.02412 * 15 14 12 17 17 C 1.36368 * 120.17254 * 179.75806 * 16 15 14 18 18 C 1.40875 * 119.82694 * 0.51591 * 17 16 15 19 19 C 1.41151 * 120.16352 * 179.71619 * 18 17 16 20 20 H 1.08001 * 119.99806 * 214.80713 * 19 18 17 21 21 C 1.39893 * 120.00302 * 34.80629 * 19 18 17 22 22 N 1.30885 * 119.99988 * 355.55593 * 21 19 18 23 23 Si 1.86795 * 120.00269 * 175.55604 * 21 19 18 24 24 H 1.48499 * 109.47147 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46957 * 120.00016 * 23 21 19 26 26 H 1.48504 * 109.47150 * 239.99852 * 23 21 19 27 27 C 1.40871 * 119.66910 * 359.74163 * 18 17 16 28 28 C 1.36373 * 119.82922 * 359.97438 * 27 18 17 29 29 C 1.50599 * 129.16264 * 179.87115 * 5 4 3 30 30 H 1.09000 * 109.47362 * 89.96492 * 1 2 3 31 31 H 1.08989 * 109.47452 * 209.97424 * 1 2 3 32 32 H 1.09008 * 109.46635 * 329.97326 * 1 2 3 33 33 H 1.09006 * 109.69167 * 316.24411 * 7 6 2 34 34 H 1.08997 * 109.69783 * 76.78392 * 7 6 2 35 35 H 1.09006 * 109.45551 * 190.25222 * 8 7 6 36 36 H 1.08996 * 109.46514 * 70.30129 * 8 7 6 37 37 H 0.96998 * 120.00033 * 334.89249 * 11 9 8 38 38 H 0.96996 * 119.99298 * 355.98707 * 14 12 11 39 39 H 1.08005 * 119.91137 * 0.02562 * 16 15 14 40 40 H 1.07997 * 120.08919 * 180.25744 * 17 16 15 41 41 H 0.96993 * 120.00360 * 179.97438 * 22 21 19 42 42 H 1.08005 * 120.07972 * 180.02562 * 27 18 17 43 43 H 1.08006 * 119.91025 * 180.02562 * 28 27 18 44 44 H 1.08999 * 109.68952 * 76.79511 * 29 5 4 45 45 H 1.08994 * 109.72357 * 316.23323 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6941 -0.0005 5 6 3.5327 -0.6333 -0.0015 6 6 2.2550 -1.0873 -0.0005 7 6 1.8720 -2.5430 0.0038 8 6 3.1009 -3.3639 0.4161 9 6 4.3083 -2.9352 -0.4222 10 1 4.0355 -2.9352 -1.4775 11 7 5.4121 -3.8731 -0.2033 12 6 6.3604 -4.0302 -1.1481 13 8 6.2994 -3.3937 -2.1823 14 7 7.3790 -4.8889 -0.9445 15 6 8.3122 -5.1139 -1.9530 16 6 8.8689 -6.3827 -2.1130 17 6 9.7798 -6.6118 -3.1016 18 6 10.1664 -5.5603 -3.9557 19 6 11.1131 -5.7881 -4.9775 20 1 11.8138 -5.0118 -5.2473 21 6 11.1439 -7.0195 -5.6407 22 7 10.3543 -7.9899 -5.2561 23 14 12.3120 -7.2788 -7.0751 24 1 13.0919 -6.0369 -7.3092 25 1 13.2408 -8.3943 -6.7617 26 1 11.5324 -7.6115 -8.2945 27 6 9.6037 -4.2802 -3.7845 28 6 8.6896 -4.0679 -2.7950 29 6 4.7467 -1.5245 -0.0050 30 1 -0.3634 0.0006 -1.0276 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3633 0.8898 0.5143 33 1 1.0641 -2.7082 0.7167 34 1 1.5482 -2.8407 -0.9935 35 1 2.9021 -4.4230 0.2512 36 1 3.3133 -3.1948 1.4717 37 1 5.4606 -4.3811 0.6216 38 1 7.4618 -5.3502 -0.0953 39 1 8.5745 -7.1869 -1.4548 40 1 10.2069 -7.5958 -3.2268 41 1 10.3754 -8.8435 -5.7162 42 1 9.8950 -3.4694 -4.4358 43 1 8.2571 -3.0870 -2.6628 44 1 5.1840 -1.5533 0.9930 45 1 5.4799 -1.1444 -0.7163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594059598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:42 Heat of formation + Delta-G solvation = 66.361745 kcal Electronic energy + Delta-G solvation = -28307.633870 eV Core-core repulsion = 24325.891937 eV Total energy + Delta-G solvation = -3981.741932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.43128 -41.44914 -39.47876 -38.22445 -36.07259 -35.90438 -34.96786 -34.33162 -31.46778 -31.31634 -30.95772 -29.91441 -28.64507 -26.78048 -25.16411 -23.85158 -23.17861 -22.54963 -22.36029 -21.60138 -20.86178 -19.37419 -19.05548 -18.34672 -17.91888 -17.73647 -17.02230 -16.65297 -16.25680 -15.68694 -15.60268 -15.46457 -15.07472 -14.86874 -14.66772 -14.62502 -14.49235 -14.04552 -13.95980 -13.60688 -13.57121 -13.24170 -13.20542 -13.01501 -12.82840 -12.76224 -12.67119 -12.46008 -12.26360 -11.88523 -11.79288 -11.60384 -11.35924 -11.21198 -10.96641 -10.95132 -10.61732 -10.13547 -9.86956 -9.42185 -8.64727 -8.47113 -6.29099 0.55423 0.87875 1.18345 1.40531 1.42489 1.47187 1.49821 1.55640 1.77958 2.23928 2.27431 2.83974 3.14080 3.39537 3.65006 3.71629 3.75738 3.81491 3.82297 4.16153 4.25166 4.29566 4.43247 4.45361 4.55697 4.57394 4.58760 4.70616 4.82951 4.91729 4.96988 4.98313 5.10972 5.17016 5.19332 5.21956 5.24266 5.37408 5.48644 5.55899 5.67762 5.73676 5.88168 6.07823 6.16486 6.31762 6.44423 6.72411 7.00474 7.05108 7.23982 7.44183 7.72809 8.45717 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.001920 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.427015 B =14576.403740 C =14930.190878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.276 5.276 3 N -0.134 5.134 4 N -0.309 5.309 5 C -0.038 4.038 6 C -0.008 4.008 7 C -0.035 4.035 8 C -0.112 4.112 9 C 0.171 3.829 10 H 0.066 0.934 11 N -0.719 5.719 12 C 0.693 3.307 13 O -0.624 6.624 14 N -0.658 5.658 15 C 0.045 3.955 16 C -0.119 4.119 17 C -0.157 4.157 18 C 0.064 3.936 19 C -0.499 4.499 20 H 0.069 0.931 21 C 0.027 3.973 22 N -0.842 5.842 23 Si 0.987 3.013 24 H -0.263 1.263 25 H -0.262 1.262 26 H -0.269 1.269 27 C -0.221 4.221 28 C -0.099 4.099 29 C -0.040 4.040 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.417 0.583 38 H 0.416 0.584 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.284 0.716 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.825 3.098 16.429 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.069 5.069 3 N -0.111 5.111 4 N -0.173 5.173 5 C -0.180 4.180 6 C -0.144 4.144 7 C -0.074 4.074 8 C -0.151 4.151 9 C 0.065 3.935 10 H 0.084 0.916 11 N -0.375 5.375 12 C 0.394 3.606 13 O -0.504 6.504 14 N -0.306 5.306 15 C -0.049 4.049 16 C -0.139 4.139 17 C -0.177 4.177 18 C 0.061 3.939 19 C -0.530 4.530 20 H 0.087 0.913 21 C -0.184 4.184 22 N -0.470 5.470 23 Si 0.809 3.191 24 H -0.187 1.187 25 H -0.186 1.186 26 H -0.194 1.194 27 C -0.241 4.241 28 C -0.120 4.120 29 C -0.081 4.081 30 H 0.125 0.875 31 H 0.154 0.846 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.255 0.745 38 H 0.253 0.747 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.009 5.044 15.486 28.190 hybrid contribution 0.791 -0.942 -0.400 1.294 sum -22.217 4.102 15.086 27.166 Atomic orbital electron populations 1.22814 0.69578 1.08167 1.06790 1.47286 1.10834 1.03786 1.44970 1.78485 0.96112 1.12958 1.23552 1.74748 1.10830 1.13843 1.17844 1.21820 0.96349 0.90917 1.08879 1.22402 0.90081 0.94050 1.07828 1.20355 0.99459 0.82311 1.05279 1.21858 0.90901 1.01715 1.00592 1.20803 0.86096 0.85897 1.00724 0.91558 1.44816 1.25509 1.46555 1.20649 1.16237 0.80181 0.80501 0.83723 1.90914 1.78522 1.51412 1.29555 1.41857 1.25219 1.46538 1.16949 1.17059 0.98076 0.93363 0.96400 1.20540 0.99625 0.94156 0.99599 1.21162 1.01357 1.00179 0.94987 1.18032 0.92361 0.91648 0.91829 1.19713 1.16315 0.99673 1.17289 0.91267 1.26701 0.96624 0.94378 1.00723 1.69826 1.34268 1.04037 1.38875 0.85077 0.77979 0.79099 0.76986 1.18659 1.18624 1.19448 1.20914 1.02673 0.98062 1.02427 1.20517 0.96863 0.97797 0.96798 1.20312 0.92355 0.92727 1.02691 0.87534 0.84580 0.87222 0.85327 0.88039 0.86975 0.88652 0.74532 0.74659 0.85383 0.86234 0.90532 0.89084 0.87766 0.88676 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.27 127.77 1.44 1.70 16 2 N -0.28 -4.68 3.73 -356.42 -1.33 -6.01 16 3 N -0.13 -3.60 13.19 37.02 0.49 -3.11 16 4 N -0.31 -9.75 12.40 -48.99 -0.61 -10.36 16 5 C -0.04 -0.95 7.11 41.75 0.30 -0.65 16 6 C -0.01 -0.13 6.76 41.50 0.28 0.15 16 7 C -0.03 -0.23 5.97 29.94 0.18 -0.05 16 8 C -0.11 -0.87 5.37 30.77 0.17 -0.71 16 9 C 0.17 3.25 2.43 45.20 0.11 3.36 16 10 H 0.07 1.69 7.55 -2.39 -0.02 1.67 16 11 N -0.72 -14.32 5.08 -456.82 -2.32 -16.64 16 12 C 0.69 22.66 8.36 179.05 1.50 24.15 16 13 O -0.62 -27.46 13.42 -4.00 -0.05 -27.51 16 14 N -0.66 -21.09 5.31 -316.78 -1.68 -22.78 16 15 C 0.05 1.98 6.31 38.56 0.24 2.22 16 16 C -0.12 -5.27 9.90 22.13 0.22 -5.05 16 17 C -0.16 -8.22 8.62 22.48 0.19 -8.03 16 18 C 0.06 3.59 5.55 -21.27 -0.12 3.47 16 19 C -0.50 -28.12 9.02 23.39 0.21 -27.91 16 20 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 21 C 0.03 1.42 5.42 85.23 0.46 1.88 16 22 N -0.84 -44.89 10.60 21.82 0.23 -44.66 16 23 Si 0.99 40.03 29.56 68.60 2.03 42.06 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 26 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 27 C -0.22 -11.92 9.74 22.48 0.22 -11.70 16 28 C -0.10 -4.96 8.61 22.13 0.19 -4.77 16 29 C -0.04 -0.96 5.88 29.99 0.18 -0.78 16 30 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.14 -0.48 7.71 -2.39 -0.02 -0.50 16 32 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.13 -0.14 7.87 -2.38 -0.02 -0.16 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.09 0.47 8.11 -2.39 -0.02 0.45 16 37 H 0.42 4.66 8.62 -92.71 -0.80 3.86 16 38 H 0.42 9.31 8.83 -92.71 -0.82 8.49 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.12 6.51 6.13 -2.91 -0.02 6.49 16 41 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16 42 H 0.09 4.80 8.06 -2.91 -0.02 4.77 16 43 H 0.10 5.27 6.22 -2.91 -0.02 5.26 16 44 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -86.04 373.09 1.96 -84.09 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.56 Total: 27.63 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 5.77 Total: -22.71 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -5.22 Total: -103.55 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -86.04 1.96 -84.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594059598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.449 kcal (2) G-P(sol) polarization free energy of solvation -86.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds