Wall clock time and date at job start Sat Apr 11 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46989 * 2 1 4 4 N 1.40090 * 126.03481 * 269.97449 * 3 2 1 5 5 C 1.30837 * 108.20714 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.89875 * 180.02562 * 5 4 3 7 7 C 1.39872 * 108.19813 * 359.77731 * 5 4 3 8 8 S 1.76204 * 126.03500 * 180.23218 * 7 5 4 9 9 O 1.42098 * 106.40237 * 23.69573 * 8 7 5 10 10 O 1.42098 * 106.40094 * 156.61545 * 8 7 5 11 11 N 1.65605 * 107.21898 * 270.15453 * 8 7 5 12 12 C 1.46920 * 120.62900 * 269.72400 * 11 8 7 13 13 C 1.53630 * 108.54356 * 126.36769 * 12 11 8 14 14 C 1.53036 * 109.23955 * 54.85725 * 13 12 11 15 15 C 1.53046 * 109.53616 * 298.51007 * 14 13 12 16 16 H 1.09001 * 109.52536 * 301.39977 * 15 14 13 17 17 C 1.50704 * 109.49719 * 181.32144 * 15 14 13 18 18 H 1.07994 * 119.99614 * 240.16339 * 17 15 14 19 19 C 1.37871 * 119.99889 * 60.15872 * 17 15 14 20 20 N 1.31515 * 120.00627 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99797 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46895 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46949 * 119.99977 * 21 19 17 24 24 H 1.48498 * 109.47454 * 240.00142 * 21 19 17 25 25 C 1.46924 * 120.62738 * 89.99941 * 11 8 7 26 26 C 1.34947 * 126.04434 * 89.99517 * 3 2 1 27 27 C 1.50706 * 126.12086 * 359.94562 * 26 3 2 28 28 H 1.08997 * 109.47557 * 60.00688 * 1 2 3 29 29 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47342 * 300.00088 * 1 2 3 31 31 H 1.08996 * 109.46976 * 239.99667 * 2 1 3 32 32 H 1.09002 * 109.46713 * 119.99542 * 2 1 3 33 33 H 1.08997 * 109.46821 * 89.97506 * 6 5 4 34 34 H 1.08997 * 109.46792 * 209.97657 * 6 5 4 35 35 H 1.08999 * 109.46853 * 329.97693 * 6 5 4 36 36 H 1.09003 * 109.58628 * 246.19745 * 12 11 8 37 37 H 1.09004 * 109.59248 * 6.62582 * 12 11 8 38 38 H 1.08993 * 109.63069 * 294.86314 * 13 12 11 39 39 H 1.09005 * 109.42968 * 174.71969 * 13 12 11 40 40 H 1.09005 * 109.46106 * 178.49441 * 14 13 12 41 41 H 1.09004 * 109.45345 * 58.52288 * 14 13 12 42 42 H 0.96996 * 120.00430 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.58800 * 353.37525 * 25 11 8 44 44 H 1.09001 * 109.57909 * 113.80149 * 25 11 8 45 45 H 1.08999 * 109.46995 * 90.02290 * 27 26 3 46 46 H 1.08994 * 109.46790 * 210.01977 * 27 26 3 47 47 H 1.08997 * 109.47305 * 330.02417 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1580 -1.1328 5 6 2.7090 3.3322 -0.7323 6 6 3.1140 4.4777 -1.6239 7 6 2.7069 3.3426 0.6664 8 16 3.1769 4.6948 1.6937 9 8 3.0116 5.8695 0.9114 10 8 2.5283 4.4947 2.9421 11 7 4.8012 4.5498 1.9822 12 6 5.2908 3.7940 3.1430 13 6 6.2955 2.7407 2.6519 14 6 7.3955 3.4317 1.8429 15 6 6.7789 4.1156 0.6204 16 1 6.2631 3.3744 0.0099 17 6 7.8669 4.7682 -0.1929 18 1 7.8487 5.8347 -0.3619 19 6 8.8854 4.0038 -0.7212 20 7 8.9073 2.7049 -0.5158 21 14 10.2335 4.8127 -1.7300 22 1 9.9801 6.2736 -1.8139 23 1 11.5478 4.5752 -1.0807 24 1 10.2447 4.2325 -3.0970 25 6 5.7798 5.1797 1.0854 26 6 2.2829 2.1299 1.0911 27 6 2.1278 1.6951 2.5258 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.2427 5.0963 -1.8389 34 1 3.8715 5.0790 -1.1213 35 1 3.5206 4.0861 -2.5563 36 1 5.7809 4.4730 3.8409 37 1 4.4539 3.3003 3.6371 38 1 5.7842 2.0122 2.0227 39 1 6.7383 2.2343 3.5096 40 1 8.1250 2.6910 1.5151 41 1 7.8899 4.1775 2.4654 42 1 9.6237 2.1671 -0.8878 43 1 5.2658 5.6006 0.2213 44 1 6.3089 5.9693 1.6189 45 1 3.0592 1.2474 2.8724 46 1 1.8886 2.5605 3.1438 47 1 1.3236 0.9630 2.5987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594804707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:53 Heat of formation + Delta-G solvation = -14.058308 kcal Electronic energy + Delta-G solvation = -30050.819088 eV Core-core repulsion = 26168.741081 eV Total energy + Delta-G solvation = -3882.078007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33845 -37.66378 -36.95948 -35.44563 -35.03724 -33.28339 -32.52591 -31.05851 -30.84474 -30.07030 -27.66672 -27.09061 -25.09918 -23.63535 -23.42297 -21.66990 -21.07948 -19.52821 -19.38579 -18.25343 -17.50349 -16.80099 -16.21187 -15.89017 -15.48966 -15.30501 -14.63330 -14.51721 -13.98002 -13.82825 -13.52147 -13.41350 -13.31251 -13.20785 -13.11058 -12.75838 -12.67658 -12.52785 -12.40989 -12.15683 -11.93192 -11.84918 -11.74256 -11.70363 -11.36023 -11.23085 -11.06157 -10.99290 -10.83411 -10.68087 -10.33503 -10.23209 -9.93046 -9.80274 -9.42661 -9.05688 -8.93201 -8.82135 -8.42801 -8.11264 -6.01207 -4.08174 0.90370 1.64369 2.38047 2.48274 3.28880 3.37508 3.41311 3.53861 4.18177 4.29235 4.37362 4.42509 4.62168 4.66520 4.86557 4.92932 4.98040 5.24359 5.25981 5.31149 5.33822 5.39964 5.46785 5.66349 5.68887 5.76252 5.80917 5.91874 5.93434 6.00837 6.14521 6.20102 6.28079 6.35698 6.51904 6.63068 6.66158 6.74635 6.89864 6.92088 7.07491 7.23418 7.45767 7.65538 7.71615 7.95299 8.09699 8.40392 8.96166 9.57061 11.04135 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.004458 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.586236 B = 6280.009927 C = 6822.665321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 N -0.361 5.361 4 N -0.298 5.298 5 C 0.171 3.829 6 C -0.089 4.089 7 C -0.813 4.813 8 S 2.720 3.280 9 O -0.961 6.961 10 O -0.977 6.977 11 N -0.992 5.992 12 C 0.126 3.874 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.126 3.874 26 C 0.209 3.791 27 C -0.136 4.136 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.036 0.964 42 H 0.259 0.741 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.125 0.875 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.001 -5.383 5.642 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.139 5.139 4 N -0.118 5.118 5 C 0.002 3.998 6 C -0.148 4.148 7 C -0.911 4.911 8 S 2.810 3.190 9 O -0.951 6.951 10 O -0.967 6.967 11 N -0.831 5.831 12 C 0.001 3.999 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.552 4.552 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 C 0.003 3.997 26 C 0.074 3.926 27 C -0.194 4.194 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.112 0.888 46 H 0.143 0.857 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.784 -5.822 4.851 16.613 hybrid contribution 1.147 -0.151 -0.414 1.228 sum -13.637 -5.973 4.437 15.535 Atomic orbital electron populations 1.22200 0.94075 1.03184 1.03408 1.21773 0.95343 0.77986 1.04922 1.49053 1.49432 1.11886 1.03566 1.77360 1.23899 1.03849 1.06699 1.21851 0.92985 0.93827 0.91128 1.20533 1.02915 0.92909 0.98432 1.31339 1.32496 1.18496 1.08729 1.00878 0.72146 0.73251 0.72775 1.93528 1.85318 1.44652 1.71644 1.93429 1.74300 1.86852 1.42137 1.57642 1.23294 1.66085 1.36082 1.21482 0.97846 0.94039 0.86574 1.22070 0.98173 0.97390 0.99603 1.21560 0.97015 1.00188 0.95925 1.18971 0.92719 0.93048 0.93268 0.95250 1.21160 1.08061 0.94313 1.31706 0.92273 1.24924 0.97916 0.94760 0.96129 1.69888 1.32986 1.04691 1.45206 0.86573 0.81881 0.79780 0.79981 1.19631 1.21142 1.21134 1.21838 0.90156 0.96529 0.91219 1.20861 0.91249 0.89232 0.91210 1.21206 1.03940 1.05508 0.88760 0.91452 0.90290 0.91912 0.88232 0.88627 0.89575 0.88752 0.90121 0.91477 0.90834 0.92811 0.92784 0.88939 0.94531 0.93142 0.90598 0.91912 0.88770 0.85714 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.12 1.17 6.78 -4.04 -0.03 1.15 16 3 N -0.36 -5.26 3.61 -57.14 -0.21 -5.46 16 4 N -0.30 -5.20 12.58 33.67 0.42 -4.78 16 5 C 0.17 3.06 7.21 -82.40 -0.59 2.46 16 6 C -0.09 -1.46 9.53 36.01 0.34 -1.11 16 7 C -0.81 -13.89 6.17 -40.01 -0.25 -14.14 16 8 S 2.72 47.45 5.66 -107.50 -0.61 46.84 16 9 O -0.96 -18.52 14.65 -57.17 -0.84 -19.36 16 10 O -0.98 -16.87 13.95 -57.17 -0.80 -17.67 16 11 N -0.99 -17.69 3.28 -113.28 -0.37 -18.06 16 12 C 0.13 2.01 6.41 -3.49 -0.02 1.99 16 13 C -0.13 -2.35 6.10 -26.39 -0.16 -2.51 16 14 C -0.11 -2.39 4.96 -26.69 -0.13 -2.53 16 15 C 0.04 0.93 2.25 -91.65 -0.21 0.73 16 16 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.51 -13.39 8.56 -34.44 -0.29 -13.69 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 20 N -0.89 -24.55 11.32 55.43 0.63 -23.93 16 21 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.13 2.55 5.60 -3.71 -0.02 2.53 16 26 C 0.21 3.09 6.92 -82.26 -0.57 2.52 16 27 C -0.14 -1.50 9.58 36.01 0.34 -1.15 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 0.69 7.66 -51.93 -0.40 0.30 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.62 5.43 -51.93 -0.28 1.34 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.00 7.12 -51.93 -0.37 0.63 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.08 1.51 5.65 -51.93 -0.29 1.22 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.12 1.50 5.53 -51.93 -0.29 1.21 16 47 H 0.08 0.63 7.72 -51.93 -0.40 0.23 16 LS Contribution 378.58 15.07 5.71 5.71 Total: -1.00 -32.15 378.58 -9.77 -41.92 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.38 Total: 2.17 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -1.30 Total: -23.10 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.47 Total: -52.23 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.64 Total: -37.03 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 47.45 SS G_CDS: -0.61 Total: 46.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.15 -9.77 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.866 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds