Wall clock time and date at job start Sat Apr 11 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.46507 * 119.99848 * 60.00407 * 12 2 1 14 14 S 1.65600 * 120.00190 * 240.00150 * 12 2 1 15 15 O 1.42105 * 106.39904 * 203.53992 * 14 12 2 16 16 O 1.42096 * 106.39936 * 336.46149 * 14 12 2 17 17 N 1.65595 * 107.21701 * 90.00283 * 14 12 2 18 18 C 1.46497 * 120.00498 * 64.99908 * 17 14 12 19 19 C 1.52998 * 109.47544 * 164.99742 * 18 17 14 20 20 C 1.52992 * 109.47309 * 300.00316 * 19 18 17 21 21 C 1.53002 * 109.46997 * 60.00508 * 19 18 17 22 22 C 1.50704 * 109.47118 * 179.97438 * 19 18 17 23 23 C 1.38644 * 120.78951 * 359.72680 * 22 19 18 24 24 C 1.38205 * 119.15862 * 179.79914 * 23 22 19 25 25 N 1.31866 * 120.76886 * 0.47877 * 24 23 22 26 26 C 1.31880 * 121.72312 * 359.74785 * 25 24 23 27 27 C 1.38202 * 120.76384 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 29 29 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 31 31 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 32 32 H 1.08993 * 109.47215 * 89.99564 * 13 12 2 33 33 H 1.09001 * 109.46606 * 210.00169 * 13 12 2 34 34 H 1.09004 * 109.46774 * 329.99892 * 13 12 2 35 35 H 0.96997 * 120.00146 * 245.00072 * 17 14 12 36 36 H 1.09004 * 109.47405 * 285.00281 * 18 17 14 37 37 H 1.09006 * 109.46952 * 45.00104 * 18 17 14 38 38 H 1.09003 * 109.47099 * 59.99609 * 20 19 18 39 39 H 1.09005 * 109.47433 * 179.97438 * 20 19 18 40 40 H 1.08997 * 109.47233 * 299.99479 * 20 19 18 41 41 H 1.09002 * 109.47728 * 59.99436 * 21 19 18 42 42 H 1.08997 * 109.47389 * 180.02562 * 21 19 18 43 43 H 1.09003 * 109.46720 * 299.99968 * 21 19 18 44 44 H 1.08002 * 120.42291 * 359.97438 * 23 22 19 45 45 H 1.08003 * 119.61777 * 180.20971 * 24 23 22 46 46 H 1.07999 * 119.61571 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.41801 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0933 1.4279 14 16 2.9705 0.1142 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.1510 -0.0354 4.2817 19 6 0.6087 0.8072 5.4378 20 6 1.7767 1.3988 6.2294 21 6 -0.2560 1.9402 4.8814 22 6 -0.2248 -0.0612 6.3446 23 6 -0.4071 -1.4073 6.0673 24 6 -1.1746 -2.1734 6.9240 25 7 -1.7375 -1.6360 7.9886 26 6 -1.5895 -0.3585 8.2808 27 6 -0.8323 0.4684 7.4729 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 1.9111 -0.5221 -4.4375 32 1 2.4158 -2.7377 0.9715 33 1 1.6239 -2.2853 2.5001 34 1 0.6905 -2.3002 0.9845 35 1 1.9054 1.7748 3.4682 36 1 0.3188 -0.4569 3.7177 37 1 1.7670 -0.8426 4.6781 38 1 2.3792 2.0270 5.5733 39 1 1.3904 1.9995 7.0529 40 1 2.3927 0.5917 6.6259 41 1 -1.0882 1.5188 4.3173 42 1 -0.6420 2.5408 5.7050 43 1 0.3465 2.5684 4.2252 44 1 0.0473 -1.8523 5.1944 45 1 -1.3187 -3.2236 6.7170 46 1 -2.0656 0.0461 9.1618 47 1 -0.7151 1.5139 7.7173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619751081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:12 Heat of formation + Delta-G solvation = -62.304178 kcal Electronic energy + Delta-G solvation = -29125.898502 eV Core-core repulsion = 25241.728397 eV Total energy + Delta-G solvation = -3884.170105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42188 -38.80358 -38.34993 -38.04518 -36.92188 -34.66408 -34.51357 -32.22095 -31.78519 -31.56237 -28.16946 -27.46990 -27.28049 -26.91948 -24.52753 -23.90671 -22.70128 -20.57545 -20.42442 -19.01075 -18.95902 -18.23990 -17.63638 -17.36838 -17.16077 -16.58783 -16.29741 -15.89476 -15.74991 -15.24648 -15.04544 -14.91410 -14.70297 -14.49281 -14.43039 -14.33591 -14.15004 -13.84579 -13.55024 -13.47670 -13.22577 -13.14774 -13.06723 -12.92013 -12.83600 -12.79155 -12.72203 -12.20770 -12.17471 -12.10718 -11.99401 -11.58956 -11.44969 -11.30684 -10.76257 -10.52731 -10.42484 -10.33320 -10.00203 -9.76781 -8.29229 -6.34496 -0.39351 0.27796 0.35671 1.30955 1.39972 1.48143 1.97816 2.32618 2.59471 2.93101 3.05807 3.32191 3.46596 3.59608 3.67878 3.91964 3.95653 4.07972 4.19035 4.27122 4.29598 4.43649 4.48304 4.62108 4.66136 4.69623 4.72248 4.78721 4.80668 4.81953 4.88514 4.93972 4.95771 4.96081 5.00771 5.13724 5.19307 5.23070 5.34207 5.38168 5.47599 5.50227 5.61745 5.82118 5.85081 6.11748 6.35074 6.70565 7.10876 7.30364 8.87679 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.003364 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.465419 B = 8322.296263 C = 8618.820075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.243 3.757 3 H 0.045 0.955 4 C -0.527 4.527 5 H 0.039 0.961 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.942 3.058 9 H -0.253 1.253 10 H -0.245 1.245 11 H -0.301 1.301 12 N -0.991 5.991 13 C 0.101 3.899 14 S 2.797 3.203 15 O -1.007 7.007 16 O -1.015 7.015 17 N -1.111 6.111 18 C 0.117 3.883 19 C -0.023 4.023 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.028 4.028 23 C -0.184 4.184 24 C 0.090 3.910 25 N -0.519 5.519 26 C 0.088 3.912 27 C -0.164 4.164 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.266 0.734 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.423 0.577 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.148 0.852 45 H 0.169 0.831 46 H 0.174 0.826 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 5.225 24.269 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.137 3.863 3 H 0.063 0.937 4 C -0.567 4.567 5 H 0.057 0.943 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.768 3.232 9 H -0.179 1.179 10 H -0.168 1.168 11 H -0.229 1.229 12 N -0.832 5.832 13 C -0.044 4.044 14 S 2.806 3.194 15 O -0.990 6.990 16 O -0.999 6.999 17 N -0.876 5.876 18 C -0.009 4.009 19 C -0.025 4.025 20 C -0.200 4.200 21 C -0.199 4.199 22 C -0.037 4.037 23 C -0.203 4.203 24 C -0.067 4.067 25 N -0.229 5.229 26 C -0.068 4.068 27 C -0.183 4.183 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.261 0.739 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.166 0.834 45 H 0.186 0.814 46 H 0.191 0.809 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.672 4.518 24.630 26.844 hybrid contribution 0.186 1.007 -1.500 1.816 sum -9.486 5.525 23.130 25.603 Atomic orbital electron populations 1.22362 0.96124 1.02553 1.00518 1.18837 0.92509 0.92435 0.82540 0.93687 1.21491 1.31445 1.13110 0.90640 0.94301 1.25811 0.97433 0.99929 0.95263 1.70040 1.47432 1.42526 0.98654 0.85973 0.79612 0.79918 0.77669 1.17853 1.16846 1.22934 1.57358 1.70107 1.21113 1.34605 1.21400 1.01796 0.80117 1.01116 1.01205 0.73477 0.72339 0.72385 1.93531 1.69615 1.61347 1.74486 1.93555 1.75676 1.57331 1.73322 1.55734 1.62153 1.18180 1.51574 1.21673 0.95071 0.93047 0.91136 1.19623 0.95169 0.94898 0.92763 1.21940 0.96633 1.01138 1.00332 1.21942 0.99339 0.96839 1.01818 1.20232 0.94826 0.93843 0.94760 1.22378 1.01123 0.94635 1.02181 1.23071 0.92673 1.01191 0.89718 1.67692 1.21671 1.14594 1.18937 1.23160 0.95427 0.88873 0.99358 1.22168 0.98560 1.02518 0.95069 0.94223 0.91379 0.90727 0.92454 0.95053 0.89434 0.89747 0.73948 0.89860 0.90274 0.91572 0.90256 0.92917 0.92157 0.90369 0.91371 0.83449 0.81366 0.80857 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.60 8.65 71.99 0.62 -4.97 16 2 C 0.24 10.59 2.21 44.25 0.10 10.69 16 3 H 0.05 2.09 5.97 -2.39 -0.01 2.07 16 4 C -0.53 -29.22 8.95 25.60 0.23 -28.99 16 5 H 0.04 2.41 7.89 -2.91 -0.02 2.39 16 6 C 0.01 0.77 5.45 84.65 0.46 1.23 16 7 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 8 Si 0.94 42.87 24.37 68.60 1.67 44.54 16 9 H -0.25 -10.48 6.88 99.48 0.68 -9.80 16 10 H -0.24 -10.25 6.52 99.48 0.65 -9.60 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 12 N -0.99 -36.65 3.12 -520.42 -1.62 -38.28 16 13 C 0.10 3.19 9.53 127.77 1.22 4.41 16 14 S 2.80 96.99 6.10 -56.49 -0.34 96.65 16 15 O -1.01 -38.10 16.68 -128.00 -2.14 -40.24 16 16 O -1.01 -43.67 16.70 -128.00 -2.14 -45.81 16 17 N -1.11 -24.90 5.39 -187.49 -1.01 -25.91 16 18 C 0.12 2.05 3.82 86.38 0.33 2.38 16 19 C -0.02 -0.31 0.63 -52.93 -0.03 -0.34 16 20 C -0.14 -1.85 8.13 71.98 0.59 -1.27 16 21 C -0.14 -1.63 8.12 71.98 0.58 -1.05 16 22 C -0.03 -0.39 4.77 -19.67 -0.09 -0.49 16 23 C -0.18 -2.80 9.05 22.36 0.20 -2.60 16 24 C 0.09 1.48 11.18 84.68 0.95 2.43 16 25 N -0.52 -9.77 10.36 -195.84 -2.03 -11.80 16 26 C 0.09 1.26 11.18 84.68 0.95 2.20 16 27 C -0.16 -1.99 8.84 22.36 0.20 -1.79 16 28 H 0.04 1.50 3.28 -2.39 -0.01 1.49 16 29 H 0.07 2.30 6.66 -2.39 -0.02 2.29 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 2.06 7.79 -2.39 -0.02 2.04 16 34 H 0.08 2.46 6.43 -2.38 -0.02 2.44 16 35 H 0.42 7.83 6.47 -96.75 -0.63 7.21 16 36 H 0.08 1.29 7.55 -2.39 -0.02 1.27 16 37 H 0.08 1.46 7.19 -2.38 -0.02 1.45 16 38 H 0.07 0.88 7.20 -2.39 -0.02 0.86 16 39 H 0.08 0.73 7.48 -2.38 -0.02 0.71 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.66 7.48 -2.39 -0.02 0.64 16 43 H 0.07 0.77 6.60 -2.39 -0.02 0.76 16 44 H 0.15 1.90 6.07 -2.91 -0.02 1.88 16 45 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 46 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 47 H 0.16 1.10 7.28 -2.91 -0.02 1.08 16 Total: -1.00 -77.65 376.01 -0.73 -78.39 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.28 Total: 18.76 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 6.29 Total: -18.15 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -4.36 Total: -134.14 kcal Atomic # 8 Polarization: -81.77 SS G_CDS: -4.27 Total: -86.05 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.67 Total: 44.54 kcal Atomic # 16 Polarization: 96.99 SS G_CDS: -0.34 Total: 96.65 kcal Total: -77.65 -0.73 -78.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.084 kcal (2) G-P(sol) polarization free energy of solvation -77.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds