Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47431 * 2 1 4 4 C 1.34225 * 117.00367 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00088 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00187 * 180.02562 * 4 3 2 7 7 C 1.50699 * 112.84702 * 309.66614 * 6 4 3 8 8 O 1.20826 * 119.99870 * 228.80024 * 7 6 4 9 9 O 1.34218 * 120.00192 * 48.80678 * 7 6 4 10 10 C 1.45202 * 117.00377 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46505 * 329.99873 * 10 9 7 12 12 C 1.53006 * 109.47243 * 89.99417 * 10 9 7 13 13 C 1.50698 * 109.47680 * 209.99909 * 10 9 7 14 14 O 1.21281 * 119.99422 * 354.99439 * 13 10 9 15 15 N 1.34769 * 120.00321 * 175.00270 * 13 10 9 16 16 C 1.46502 * 120.00154 * 359.97438 * 15 13 10 17 17 C 1.46499 * 119.99994 * 180.02562 * 15 13 10 18 18 C 1.50703 * 109.47449 * 89.99815 * 17 15 13 19 19 H 1.07995 * 119.99737 * 359.97438 * 18 17 15 20 20 C 1.37871 * 119.99952 * 180.02562 * 18 17 15 21 21 N 1.31508 * 120.00278 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99701 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47289 * 90.00146 * 22 20 18 24 24 H 1.48498 * 109.47104 * 209.99801 * 22 20 18 25 25 H 1.48499 * 109.47137 * 329.99741 * 22 20 18 26 26 C 1.53788 * 113.68825 * 80.93385 * 6 4 3 27 27 C 1.53780 * 87.07942 * 89.12798 * 26 6 4 28 28 C 1.53782 * 87.08423 * 25.43183 * 27 26 6 29 29 H 1.09000 * 109.46670 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47073 * 299.99620 * 1 2 3 31 31 H 1.09004 * 109.46945 * 60.00152 * 1 2 3 32 32 H 1.09004 * 109.47220 * 240.00004 * 2 1 3 33 33 H 1.09007 * 109.47265 * 120.00543 * 2 1 3 34 34 H 1.09001 * 109.47002 * 60.00200 * 12 10 9 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 300.00466 * 12 10 9 37 37 H 1.08990 * 109.47314 * 89.99806 * 16 15 13 38 38 H 1.08998 * 109.47376 * 210.01109 * 16 15 13 39 39 H 1.09005 * 109.46677 * 330.00437 * 16 15 13 40 40 H 1.09007 * 109.46830 * 209.99384 * 17 15 13 41 41 H 1.08993 * 109.47505 * 329.99405 * 17 15 13 42 42 H 0.97003 * 120.00108 * 180.02562 * 21 20 18 43 43 H 1.08994 * 113.60834 * 203.67517 * 26 6 4 44 44 H 1.08999 * 113.61673 * 334.57857 * 26 6 4 45 45 H 1.09003 * 113.61655 * 270.87791 * 27 26 6 46 46 H 1.09001 * 113.69078 * 139.99159 * 27 26 6 47 47 H 1.09002 * 113.61126 * 220.02106 * 28 27 26 48 48 H 1.08996 * 113.69116 * 89.12251 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.3248 3.8175 -1.0682 8 8 4.0464 4.4605 -1.7933 9 8 1.9924 3.8873 -1.2141 10 6 1.4886 4.7557 -2.2631 11 1 2.1810 5.5841 -2.4126 12 6 1.3562 3.9606 -3.5637 13 6 0.1390 5.2947 -1.8643 14 8 -0.3908 4.9083 -0.8441 15 7 -0.4792 6.2059 -2.6414 16 6 0.1610 6.6729 -3.8736 17 6 -1.7909 6.7303 -2.2533 18 6 -1.6084 7.9564 -1.3964 19 1 -0.6146 8.3095 -1.1637 20 6 -2.7100 8.6268 -0.9085 21 7 -3.9200 8.1965 -1.1914 22 14 -2.4836 10.1462 0.1542 23 1 -2.4417 11.3531 -0.7100 24 1 -3.6180 10.2581 1.1059 25 1 -1.2111 10.0353 0.9117 26 6 3.9526 3.5923 1.3911 27 6 5.3428 2.9599 1.5704 28 6 5.4579 2.9682 0.0370 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.6639 3.1321 -3.4142 35 1 0.9785 4.6126 -4.3512 36 1 2.3324 3.5708 -3.8522 37 1 -0.1369 6.0319 -4.7032 38 1 -0.1477 7.6982 -4.0774 39 1 1.2441 6.6360 -3.7567 40 1 -2.3563 6.9929 -3.1475 41 1 -2.3337 5.9711 -1.6903 42 1 -4.6951 8.6684 -0.8485 43 1 3.9691 4.6817 1.3604 44 1 3.2020 3.1985 2.0764 45 1 5.3149 1.9589 2.0009 46 1 6.0607 3.6137 2.0657 47 1 5.9225 2.0704 -0.3708 48 1 5.8859 3.8864 -0.3652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768575517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = -174.849158 kcal Electronic energy + Delta-G solvation = -31552.433195 eV Core-core repulsion = 27188.337152 eV Total energy + Delta-G solvation = -4364.096044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75270 -40.38119 -39.16158 -38.24596 -36.59367 -36.27732 -34.92098 -32.91393 -31.93034 -31.56940 -28.46887 -27.69171 -26.18051 -26.14015 -24.55520 -23.90409 -22.85321 -22.17596 -21.35573 -19.61907 -18.93246 -18.60455 -17.46496 -16.95004 -16.77804 -16.56464 -16.36414 -15.99725 -15.64817 -15.35946 -14.90918 -14.61384 -14.32762 -14.17940 -13.71614 -13.61317 -13.23851 -13.03896 -12.86676 -12.76143 -12.55715 -12.40977 -12.21086 -12.10229 -12.04942 -11.86925 -11.70879 -11.66956 -11.47373 -11.35165 -11.21639 -10.93559 -10.90048 -10.73103 -10.72231 -10.65284 -10.58922 -10.39073 -10.18715 -9.66839 -8.90768 -8.46713 -7.73959 -6.07661 -4.12639 1.61771 1.93177 2.38626 2.49885 3.25344 3.28680 3.35494 3.40439 3.73346 3.84712 3.99350 4.30658 4.36731 4.42005 4.53265 4.79298 4.81647 4.83412 4.93956 4.99982 5.06116 5.10125 5.27089 5.31423 5.34986 5.46676 5.51222 5.55532 5.56663 5.61991 5.62696 5.63279 5.71434 5.83441 5.89336 5.97047 5.97789 6.19764 6.24734 6.32916 6.96355 7.37265 7.42802 7.45511 7.59734 7.88382 8.18346 8.27764 8.83363 8.98268 9.52569 11.00457 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.003138 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.179663 B = 8920.245451 C = 9211.567568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.328 6.328 4 C 0.494 3.506 5 O -0.497 6.497 6 C -0.086 4.086 7 C 0.480 3.520 8 O -0.497 6.497 9 O -0.305 6.305 10 C 0.067 3.933 11 H 0.105 0.895 12 C -0.170 4.170 13 C 0.509 3.491 14 O -0.515 6.515 15 N -0.596 5.596 16 C 0.076 3.924 17 C 0.247 3.753 18 C -0.529 4.529 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.107 4.107 27 C -0.141 4.141 28 C -0.100 4.100 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.264 0.736 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.687 -13.544 -0.573 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.243 6.243 4 C 0.335 3.665 5 O -0.385 6.385 6 C -0.088 4.088 7 C 0.322 3.678 8 O -0.385 6.385 9 O -0.219 6.219 10 C 0.008 3.992 11 H 0.123 0.877 12 C -0.227 4.227 13 C 0.293 3.707 14 O -0.390 6.390 15 N -0.330 5.330 16 C -0.068 4.068 17 C 0.129 3.871 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.144 4.144 27 C -0.178 4.178 28 C -0.137 4.137 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.112 0.888 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.525 -13.822 -0.232 20.788 hybrid contribution 0.015 0.895 0.285 0.939 sum 15.540 -12.927 0.052 20.214 Atomic orbital electron populations 1.21805 0.91981 1.02720 1.04557 1.23129 0.96025 0.79596 1.02315 1.86694 1.22544 1.32465 1.82607 1.22204 0.81533 0.90055 0.72689 1.90660 1.60758 1.41810 1.45260 1.21807 0.98899 0.90344 0.97795 1.22756 0.81708 0.80588 0.82775 1.90654 1.61616 1.42826 1.43430 1.86719 1.22089 1.60735 1.52355 1.22710 0.96103 0.93660 0.86696 0.87702 1.22273 1.03362 1.01647 0.95401 1.19706 0.85738 0.80561 0.84687 1.90714 1.65607 1.58600 1.24050 1.48066 1.22144 1.40356 1.22433 1.21840 0.96991 1.01078 0.86868 1.19343 0.77132 0.94548 0.96096 1.21425 0.92966 1.10624 1.31766 0.92428 1.24921 0.94989 0.97856 0.96227 1.69926 0.97675 1.40222 1.45457 0.86491 0.77902 0.82711 0.80300 1.20606 1.21032 1.19880 1.22966 0.99048 1.01808 0.90589 1.22942 0.96695 1.02117 0.96079 1.22973 0.88155 1.05349 0.97192 0.90305 0.91001 0.90982 0.91278 0.91188 0.90907 0.89193 0.91472 0.93148 0.90281 0.92400 0.94649 0.93627 0.92656 0.87477 0.88971 0.89166 0.89516 0.88843 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 37.16 0.38 -1.12 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.33 -4.55 9.30 -43.95 -0.41 -4.96 16 4 C 0.49 6.60 6.73 36.01 0.24 6.84 16 5 O -0.50 -6.96 15.58 -18.75 -0.29 -7.25 16 6 C -0.09 -1.07 1.27 -155.99 -0.20 -1.27 16 7 C 0.48 7.23 6.99 36.00 0.25 7.49 16 8 O -0.50 -7.85 15.12 -18.75 -0.28 -8.13 16 9 O -0.30 -5.24 8.49 -48.07 -0.41 -5.65 16 10 C 0.07 1.12 2.16 -27.88 -0.06 1.05 16 11 H 0.11 1.67 6.14 -51.93 -0.32 1.35 16 12 C -0.17 -2.24 9.27 37.16 0.34 -1.90 16 13 C 0.51 10.80 7.10 -10.99 -0.08 10.72 16 14 O -0.51 -13.18 16.09 -14.05 -0.23 -13.41 16 15 N -0.60 -12.47 2.86 -182.96 -0.52 -12.99 16 16 C 0.08 1.17 8.92 59.85 0.53 1.70 16 17 C 0.25 6.36 5.16 -5.19 -0.03 6.34 16 18 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 22 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.11 -1.09 7.21 -25.92 -0.19 -1.28 16 27 C -0.14 -1.17 7.75 -25.92 -0.20 -1.37 16 28 C -0.10 -0.99 6.78 -25.92 -0.18 -1.17 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.04 5.12 -51.93 -0.27 0.77 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.64 7.02 -51.93 -0.36 0.28 16 38 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 39 H 0.06 0.75 6.08 -51.93 -0.32 0.44 16 40 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 41 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 43 H 0.11 1.06 8.09 -51.93 -0.42 0.64 16 44 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.93 7.42 -51.93 -0.39 0.55 16 48 H 0.11 1.08 7.43 -51.93 -0.39 0.69 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -34.93 400.60 -7.20 -42.13 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.45 Total: -0.36 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 0.64 Total: 13.42 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.21 Total: -38.49 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.62 Total: -39.39 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.93 -7.20 -42.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768575517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.718 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds