Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46613 * 2 1 4 4 N 1.46503 * 109.47277 * 120.00316 * 2 1 3 5 5 S 1.65597 * 119.99773 * 263.81736 * 4 2 1 6 6 O 1.42103 * 106.40389 * 48.46442 * 5 4 2 7 7 O 1.42101 * 106.39955 * 181.38211 * 5 4 2 8 8 N 1.65601 * 107.21843 * 294.92411 * 5 4 2 9 9 C 1.46498 * 120.00178 * 95.71125 * 8 5 4 10 10 C 1.46497 * 119.99635 * 275.70949 * 8 5 4 11 11 C 1.50700 * 109.47456 * 95.24621 * 10 8 5 12 12 H 1.08004 * 119.99541 * 5.03599 * 11 10 8 13 13 C 1.37873 * 120.00244 * 185.04701 * 11 10 8 14 14 N 1.31516 * 119.99861 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99918 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46770 * 90.00774 * 15 13 11 17 17 H 1.48497 * 109.47181 * 210.00345 * 15 13 11 18 18 H 1.48492 * 109.47324 * 330.00755 * 15 13 11 19 19 C 1.50700 * 109.46876 * 240.00349 * 2 1 3 20 20 C 1.38290 * 119.92231 * 279.72393 * 19 2 1 21 21 C 1.38106 * 120.07019 * 179.72907 * 20 19 2 22 22 C 1.38910 * 119.92546 * 0.54802 * 21 20 19 23 23 N 1.39676 * 120.07597 * 179.70987 * 22 21 20 24 24 C 1.46497 * 120.00079 * 180.02562 * 23 22 21 25 25 C 1.46500 * 120.00099 * 0.02562 * 23 22 21 26 26 C 1.38906 * 119.85329 * 359.72360 * 22 21 20 27 27 C 1.38111 * 119.92446 * 0.02562 * 26 22 21 28 28 H 1.08995 * 109.47382 * 55.24454 * 1 2 3 29 29 H 1.09008 * 109.46842 * 175.24237 * 1 2 3 30 30 H 1.09000 * 109.46982 * 295.24276 * 1 2 3 31 31 H 0.96999 * 119.99804 * 83.81735 * 4 2 1 32 32 H 1.09003 * 109.47234 * 89.99691 * 9 8 5 33 33 H 1.08996 * 109.47174 * 209.99892 * 9 8 5 34 34 H 1.09004 * 109.46761 * 329.99685 * 9 8 5 35 35 H 1.09008 * 109.47016 * 215.24312 * 10 8 5 36 36 H 1.09002 * 109.47544 * 335.23955 * 10 8 5 37 37 H 0.97002 * 119.99247 * 179.97438 * 14 13 11 38 38 H 1.07993 * 119.96316 * 359.97438 * 20 19 2 39 39 H 1.08007 * 120.03676 * 180.27410 * 21 20 19 40 40 H 1.09000 * 109.47371 * 89.99709 * 24 23 22 41 41 H 1.09002 * 109.47308 * 209.99101 * 24 23 22 42 42 H 1.08997 * 109.47684 * 329.99797 * 24 23 22 43 43 H 1.08999 * 109.46803 * 90.00232 * 25 23 22 44 44 H 1.08998 * 109.47636 * 210.00703 * 25 23 22 45 45 H 1.09003 * 109.46846 * 330.00858 * 25 23 22 46 46 H 1.08002 * 120.04297 * 179.97438 * 26 22 21 47 47 H 1.07998 * 119.96197 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4400 0.1795 2.5405 6 8 1.3707 1.0827 2.7856 7 8 2.8972 -0.7626 3.5011 8 7 3.7508 1.1061 2.1335 9 6 3.5622 2.4955 1.7089 10 6 5.0989 0.5364 2.1980 11 6 5.4950 0.0276 0.8359 12 1 4.8460 0.1919 -0.0116 13 6 6.6858 -0.6477 0.6717 14 7 7.0312 -1.0921 -0.5169 15 14 7.8084 -0.9314 2.1375 16 1 7.4554 -2.2181 2.7896 17 1 9.2197 -0.9803 1.6780 18 1 7.6426 0.1783 3.1101 19 6 2.0323 -0.7103 -1.2305 20 6 2.0713 -2.0923 -1.2616 21 6 2.5258 -2.7466 -2.3898 22 6 2.9547 -2.0147 -3.4898 23 7 3.4206 -2.6730 -4.6301 24 6 3.8730 -1.8995 -5.7891 25 6 3.4569 -4.1371 -4.6673 26 6 2.9194 -0.6265 -3.4531 27 6 2.4589 0.0213 -2.3236 28 1 -0.3634 0.5858 -0.8443 29 1 -0.3633 -1.0242 -0.0852 30 1 -0.3633 0.4383 0.9295 31 1 2.0948 -1.6576 1.2006 32 1 3.5996 3.1498 2.5799 33 1 4.3529 2.7729 1.0119 34 1 2.5938 2.5974 1.2191 35 1 5.8031 1.3046 2.5178 36 1 5.1114 -0.2876 2.9114 37 1 7.8692 -1.5668 -0.6324 38 1 1.7424 -2.6606 -0.4043 39 1 2.5519 -3.8260 -2.4151 40 1 4.9392 -1.6936 -5.6948 41 1 3.6925 -2.4704 -6.6999 42 1 3.3241 -0.9589 -5.8350 43 1 2.5119 -4.5141 -5.0583 44 1 4.2730 -4.4642 -5.3115 45 1 3.6127 -4.5223 -3.6596 46 1 3.2525 -0.0544 -4.3064 47 1 2.4308 1.1006 -2.2946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773083834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = -31.923398 kcal Electronic energy + Delta-G solvation = -29311.244145 eV Core-core repulsion = 25428.391449 eV Total energy + Delta-G solvation = -3882.852696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.47790 -37.13126 -36.57346 -35.57688 -35.23824 -34.65237 -32.37145 -30.87372 -30.10623 -28.49226 -28.32400 -28.02720 -25.12308 -24.78572 -22.40601 -21.92791 -21.81293 -19.92912 -18.78030 -17.59585 -17.18247 -16.70905 -16.62753 -16.06261 -15.41567 -15.05659 -14.92534 -14.60269 -14.18454 -13.91630 -13.64338 -13.50656 -13.25430 -13.12718 -12.96847 -12.67140 -12.57284 -12.42527 -12.25784 -12.16633 -11.93610 -11.86523 -11.79654 -11.57656 -11.49594 -11.34678 -11.27851 -11.20366 -10.79739 -10.53494 -10.43248 -10.35831 -10.21041 -9.51970 -9.42612 -9.08742 -8.57806 -8.46037 -8.05501 -6.93331 -6.07809 -4.07602 1.30196 1.89908 1.99029 3.29075 3.31570 3.35792 3.40195 3.52213 4.17039 4.28889 4.40424 4.95505 5.03168 5.07487 5.09025 5.23784 5.27609 5.30020 5.41393 5.43422 5.54750 5.59032 5.62096 5.69932 5.72794 5.79731 5.82902 5.95211 6.02110 6.05808 6.13299 6.19526 6.36045 6.39024 6.41815 6.47556 6.67192 6.80373 6.86879 7.10452 7.13921 7.21075 7.34281 7.47239 7.55351 7.62537 7.77201 8.48443 8.99652 9.52680 11.03663 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009465 B = 0.005201 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.507983 B = 5381.822811 C = 7315.417323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.209 3.791 3 H 0.083 0.917 4 N -1.114 6.114 5 S 2.790 3.210 6 O -0.997 6.997 7 O -0.987 6.987 8 N -0.992 5.992 9 C 0.103 3.897 10 C 0.216 3.784 11 C -0.536 4.536 12 H 0.085 0.915 13 C 0.077 3.923 14 N -0.888 5.888 15 Si 0.864 3.136 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.133 4.133 20 C -0.054 4.054 21 C -0.191 4.191 22 C 0.215 3.785 23 N -0.641 5.641 24 C 0.097 3.903 25 C 0.097 3.903 26 C -0.187 4.187 27 C -0.055 4.055 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.412 0.588 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 -0.505 -8.192 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.101 3.899 3 H 0.101 0.899 4 N -0.872 5.872 5 S 2.797 3.203 6 O -0.980 6.980 7 O -0.971 6.971 8 N -0.833 5.833 9 C -0.043 4.043 10 C 0.093 3.907 11 C -0.575 4.575 12 H 0.103 0.897 13 C -0.126 4.126 14 N -0.526 5.526 15 Si 0.691 3.309 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.136 4.136 20 C -0.074 4.074 21 C -0.213 4.213 22 C 0.115 3.885 23 N -0.354 5.354 24 C -0.047 4.047 25 C -0.046 4.046 26 C -0.210 4.210 27 C -0.074 4.074 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.246 0.754 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.373 -0.499 -7.580 12.858 hybrid contribution 1.344 -0.747 0.143 1.544 sum -9.029 -1.246 -7.437 11.764 Atomic orbital electron populations 1.22322 0.95014 1.02403 1.02547 1.19334 0.93176 0.94917 0.82429 0.89896 1.56006 1.81752 1.19295 1.30182 1.01596 0.72701 0.72784 0.73190 1.93546 1.54373 1.65343 1.84774 1.93567 1.81843 1.63031 1.58677 1.57391 1.21725 1.21049 1.83148 1.21299 1.01546 0.81911 0.99565 1.19565 0.78463 0.94333 0.98384 1.21459 1.05900 1.36088 0.94051 0.89652 1.24833 0.97465 0.94937 0.95360 1.69921 1.23111 1.37689 1.21832 0.87043 0.80457 0.79684 0.83744 1.19885 1.21201 1.18928 1.19511 1.04880 0.93743 0.95445 1.20477 0.96880 0.93669 0.96336 1.20513 1.07917 0.99052 0.93805 1.17738 0.92808 0.91535 0.86461 1.46191 1.70446 1.04800 1.13931 1.21566 0.99413 0.96346 0.87350 1.21554 1.00431 0.80053 1.02587 1.20507 1.08357 0.92180 0.99920 1.20601 0.95651 0.99026 0.92144 0.91799 0.92281 0.91345 0.75370 0.93710 0.90598 0.92415 0.94851 0.94273 0.92835 0.86733 0.86548 0.93413 0.92134 0.91463 0.93941 0.91973 0.91258 0.86471 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.50 37.16 0.35 -1.79 16 2 C 0.21 3.23 3.00 -69.08 -0.21 3.02 16 3 H 0.08 1.27 6.63 -51.93 -0.34 0.93 16 4 N -1.11 -19.09 5.47 -5.88 -0.03 -19.12 16 5 S 2.79 54.74 6.01 -107.50 -0.65 54.10 16 6 O -1.00 -19.72 16.36 -57.17 -0.94 -20.66 16 7 O -0.99 -22.36 16.82 -57.17 -0.96 -23.32 16 8 N -0.99 -20.06 3.23 -123.05 -0.40 -20.45 16 9 C 0.10 1.73 10.18 59.85 0.61 2.34 16 10 C 0.22 5.09 4.49 -5.20 -0.02 5.06 16 11 C -0.54 -14.21 9.93 -34.44 -0.34 -14.55 16 12 H 0.09 2.41 8.06 -52.48 -0.42 1.99 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 14 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 15 Si 0.86 21.10 27.37 -169.99 -4.65 16.45 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.26 -6.20 6.69 56.52 0.38 -5.82 16 19 C -0.13 -2.15 4.96 -104.59 -0.52 -2.67 16 20 C -0.05 -0.87 9.16 -39.61 -0.36 -1.24 16 21 C -0.19 -3.03 9.21 -39.38 -0.36 -3.39 16 22 C 0.21 3.43 6.55 -83.79 -0.55 2.88 16 23 N -0.64 -8.72 3.41 -187.55 -0.64 -9.36 16 24 C 0.10 1.06 10.19 59.85 0.61 1.67 16 25 C 0.10 1.07 10.19 59.85 0.61 1.68 16 26 C -0.19 -2.97 9.21 -39.38 -0.36 -3.34 16 27 C -0.05 -0.88 9.66 -39.61 -0.38 -1.26 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.07 0.94 7.72 -51.93 -0.40 0.54 16 31 H 0.41 6.67 7.08 -34.47 -0.24 6.43 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 34 H 0.06 0.85 6.59 -51.93 -0.34 0.51 16 35 H 0.03 0.77 7.52 -51.92 -0.39 0.38 16 36 H 0.04 0.97 6.14 -51.93 -0.32 0.65 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.11 1.63 6.79 -52.49 -0.36 1.28 16 39 H 0.12 1.63 6.14 -52.48 -0.32 1.31 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 42 H 0.07 0.69 6.20 -51.93 -0.32 0.37 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 45 H 0.07 0.80 6.20 -51.93 -0.32 0.48 16 46 H 0.12 1.64 6.14 -52.49 -0.32 1.32 16 47 H 0.12 1.64 8.03 -52.49 -0.42 1.22 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -33.79 387.70 -9.73 -43.53 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.06 Total: 7.77 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.03 Total: -9.53 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -0.29 Total: -74.17 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -1.90 Total: -43.98 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.65 Total: 16.45 kcal Atomic # 16 Polarization: 54.74 SS G_CDS: -0.65 Total: 54.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.79 -9.73 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773083834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.602 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds