Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46613 * 2 1 4 4 N 1.46503 * 109.47277 * 120.00316 * 2 1 3 5 5 S 1.65597 * 119.99773 * 263.81736 * 4 2 1 6 6 O 1.42103 * 106.40389 * 48.46442 * 5 4 2 7 7 O 1.42101 * 106.39955 * 181.38211 * 5 4 2 8 8 N 1.65601 * 107.21843 * 294.92411 * 5 4 2 9 9 C 1.46498 * 120.00178 * 95.71125 * 8 5 4 10 10 C 1.46497 * 119.99635 * 275.70949 * 8 5 4 11 11 C 1.50700 * 109.47456 * 95.24621 * 10 8 5 12 12 H 1.08004 * 119.99541 * 5.03599 * 11 10 8 13 13 C 1.37873 * 120.00244 * 185.04701 * 11 10 8 14 14 N 1.31516 * 119.99861 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99918 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46770 * 90.00774 * 15 13 11 17 17 H 1.48497 * 109.47181 * 210.00345 * 15 13 11 18 18 H 1.48492 * 109.47324 * 330.00755 * 15 13 11 19 19 C 1.50700 * 109.46876 * 240.00349 * 2 1 3 20 20 C 1.38290 * 119.92231 * 279.72393 * 19 2 1 21 21 C 1.38106 * 120.07019 * 179.72907 * 20 19 2 22 22 C 1.38910 * 119.92546 * 0.54802 * 21 20 19 23 23 N 1.39676 * 120.07597 * 179.70987 * 22 21 20 24 24 C 1.46497 * 120.00079 * 180.02562 * 23 22 21 25 25 C 1.46500 * 120.00099 * 0.02562 * 23 22 21 26 26 C 1.38906 * 119.85329 * 359.72360 * 22 21 20 27 27 C 1.38111 * 119.92446 * 0.02562 * 26 22 21 28 28 H 1.08995 * 109.47382 * 55.24454 * 1 2 3 29 29 H 1.09008 * 109.46842 * 175.24237 * 1 2 3 30 30 H 1.09000 * 109.46982 * 295.24276 * 1 2 3 31 31 H 0.96999 * 119.99804 * 83.81735 * 4 2 1 32 32 H 1.09003 * 109.47234 * 89.99691 * 9 8 5 33 33 H 1.08996 * 109.47174 * 209.99892 * 9 8 5 34 34 H 1.09004 * 109.46761 * 329.99685 * 9 8 5 35 35 H 1.09008 * 109.47016 * 215.24312 * 10 8 5 36 36 H 1.09002 * 109.47544 * 335.23955 * 10 8 5 37 37 H 0.97002 * 119.99247 * 179.97438 * 14 13 11 38 38 H 1.07993 * 119.96316 * 359.97438 * 20 19 2 39 39 H 1.08007 * 120.03676 * 180.27410 * 21 20 19 40 40 H 1.09000 * 109.47371 * 89.99709 * 24 23 22 41 41 H 1.09002 * 109.47308 * 209.99101 * 24 23 22 42 42 H 1.08997 * 109.47684 * 329.99797 * 24 23 22 43 43 H 1.08999 * 109.46803 * 90.00232 * 25 23 22 44 44 H 1.08998 * 109.47636 * 210.00703 * 25 23 22 45 45 H 1.09003 * 109.46846 * 330.00858 * 25 23 22 46 46 H 1.08002 * 120.04297 * 179.97438 * 26 22 21 47 47 H 1.07998 * 119.96197 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4400 0.1795 2.5405 6 8 1.3707 1.0827 2.7856 7 8 2.8972 -0.7626 3.5011 8 7 3.7508 1.1061 2.1335 9 6 3.5622 2.4955 1.7089 10 6 5.0989 0.5364 2.1980 11 6 5.4950 0.0276 0.8359 12 1 4.8460 0.1919 -0.0116 13 6 6.6858 -0.6477 0.6717 14 7 7.0312 -1.0921 -0.5169 15 14 7.8084 -0.9314 2.1375 16 1 7.4554 -2.2181 2.7896 17 1 9.2197 -0.9803 1.6780 18 1 7.6426 0.1783 3.1101 19 6 2.0323 -0.7103 -1.2305 20 6 2.0713 -2.0923 -1.2616 21 6 2.5258 -2.7466 -2.3898 22 6 2.9547 -2.0147 -3.4898 23 7 3.4206 -2.6730 -4.6301 24 6 3.8730 -1.8995 -5.7891 25 6 3.4569 -4.1371 -4.6673 26 6 2.9194 -0.6265 -3.4531 27 6 2.4589 0.0213 -2.3236 28 1 -0.3634 0.5858 -0.8443 29 1 -0.3633 -1.0242 -0.0852 30 1 -0.3633 0.4383 0.9295 31 1 2.0948 -1.6576 1.2006 32 1 3.5996 3.1498 2.5799 33 1 4.3529 2.7729 1.0119 34 1 2.5938 2.5974 1.2191 35 1 5.8031 1.3046 2.5178 36 1 5.1114 -0.2876 2.9114 37 1 7.8692 -1.5668 -0.6324 38 1 1.7424 -2.6606 -0.4043 39 1 2.5519 -3.8260 -2.4151 40 1 4.9392 -1.6936 -5.6948 41 1 3.6925 -2.4704 -6.6999 42 1 3.3241 -0.9589 -5.8350 43 1 2.5119 -4.5141 -5.0583 44 1 4.2730 -4.4642 -5.3115 45 1 3.6127 -4.5223 -3.6596 46 1 3.2525 -0.0544 -4.3064 47 1 2.4308 1.1006 -2.2946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773083834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = -55.189411 kcal Electronic energy + Delta-G solvation = -29312.253035 eV Core-core repulsion = 25428.391449 eV Total energy + Delta-G solvation = -3883.861586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63827 -38.43743 -38.03761 -37.24265 -36.87600 -35.83440 -34.41983 -32.04245 -31.34930 -30.20620 -29.56522 -28.95939 -26.73283 -25.84054 -23.80524 -23.47998 -23.08171 -21.11189 -20.28937 -19.16581 -18.75677 -18.38618 -18.14002 -17.43016 -16.70734 -16.50628 -16.04875 -15.88079 -15.73392 -15.35916 -15.00310 -14.73479 -14.59113 -14.41997 -14.36690 -14.14508 -14.08642 -13.63215 -13.47494 -13.43975 -13.32704 -13.13622 -13.05618 -12.96727 -12.94357 -12.83109 -12.77304 -12.50567 -12.40461 -12.28702 -12.02013 -11.73581 -11.59528 -11.53242 -10.71572 -10.59793 -10.37098 -9.71795 -9.68454 -8.20598 -8.04198 -6.23112 -0.24745 0.67584 0.77094 1.35995 1.40259 1.46764 2.00293 2.33696 2.37581 2.64216 3.06671 3.13298 3.47127 3.79881 3.96882 4.02997 4.12226 4.24003 4.28333 4.39644 4.46755 4.49414 4.55973 4.64911 4.70766 4.70900 4.77667 4.82376 4.90508 4.91743 4.96920 4.97727 5.01115 5.05377 5.18117 5.24260 5.36950 5.38266 5.50201 5.52254 5.61096 5.77112 5.89947 6.05188 6.18455 6.38695 6.45266 6.64448 6.84607 7.39733 8.93098 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009465 B = 0.005201 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.507983 B = 5381.822811 C = 7315.417323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.206 3.794 3 H 0.083 0.917 4 N -1.110 6.110 5 S 2.802 3.198 6 O -0.997 6.997 7 O -1.019 7.019 8 N -0.998 5.998 9 C 0.094 3.906 10 C 0.222 3.778 11 C -0.525 4.525 12 H 0.061 0.939 13 C 0.026 3.974 14 N -0.928 5.928 15 Si 0.914 3.086 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.246 1.246 19 C -0.146 4.146 20 C -0.068 4.068 21 C -0.207 4.207 22 C 0.202 3.798 23 N -0.648 5.648 24 C 0.092 3.908 25 C 0.092 3.908 26 C -0.204 4.204 27 C -0.068 4.068 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.415 0.585 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.030 0.970 37 H 0.261 0.739 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.037 0.963 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.130 0.870 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.654 -0.063 -8.248 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.099 3.901 3 H 0.101 0.899 4 N -0.871 5.871 5 S 2.810 3.190 6 O -0.980 6.980 7 O -1.003 7.003 8 N -0.839 5.839 9 C -0.052 4.052 10 C 0.097 3.903 11 C -0.564 4.564 12 H 0.079 0.921 13 C -0.174 4.174 14 N -0.568 5.568 15 Si 0.739 3.261 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.169 1.169 19 C -0.149 4.149 20 C -0.087 4.087 21 C -0.230 4.230 22 C 0.100 3.900 23 N -0.360 5.360 24 C -0.050 4.050 25 C -0.051 4.051 26 C -0.226 4.226 27 C -0.087 4.087 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.055 0.945 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.890 -0.037 -7.642 13.304 hybrid contribution 1.444 -0.880 0.048 1.692 sum -9.445 -0.917 -7.594 12.154 Atomic orbital electron populations 1.22267 0.92992 1.03320 1.03035 1.19517 0.94701 0.94531 0.81352 0.89897 1.55865 1.81565 1.19452 1.30249 1.01123 0.72436 0.72354 0.73107 1.93541 1.54062 1.65410 1.85020 1.93520 1.82368 1.63988 1.60423 1.57358 1.20456 1.22572 1.83487 1.21558 1.02604 0.80342 1.00650 1.19321 0.80357 0.94409 0.96186 1.21600 1.05042 1.35038 0.94706 0.92119 1.25529 0.99124 0.95170 0.97528 1.70047 1.23762 1.39225 1.23782 0.86219 0.78771 0.79919 0.81202 1.20184 1.20857 1.16939 1.19631 1.05514 0.93952 0.95801 1.20726 0.97059 0.94008 0.96896 1.20770 1.08279 0.99908 0.94019 1.17997 0.92706 0.91915 0.87355 1.46500 1.69764 1.05951 1.13802 1.21710 0.98715 0.97022 0.87603 1.21709 1.02069 0.78768 1.02507 1.20768 1.08712 0.92597 1.00530 1.20880 0.95571 0.99942 0.92286 0.89903 0.91483 0.91889 0.74941 0.91708 0.90749 0.90489 0.93810 0.95199 0.92961 0.85656 0.85329 0.94472 0.89295 0.90965 0.92124 0.90345 0.92301 0.85215 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.50 71.98 0.68 -3.17 16 2 C 0.21 6.17 3.00 44.25 0.13 6.30 16 3 H 0.08 2.45 6.63 -2.39 -0.02 2.44 16 4 N -1.11 -37.40 5.47 -172.52 -0.94 -38.35 16 5 S 2.80 107.21 6.01 -56.49 -0.34 106.87 16 6 O -1.00 -37.80 16.36 -128.00 -2.09 -39.89 16 7 O -1.02 -45.62 16.82 -128.00 -2.15 -47.78 16 8 N -1.00 -39.10 3.23 -543.22 -1.75 -40.85 16 9 C 0.09 2.95 10.18 127.77 1.30 4.25 16 10 C 0.22 10.21 4.49 85.63 0.38 10.60 16 11 C -0.52 -27.77 9.93 25.60 0.25 -27.51 16 12 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 13 C 0.03 1.43 5.47 84.65 0.46 1.89 16 14 N -0.93 -55.07 13.96 21.45 0.30 -54.77 16 15 Si 0.91 42.92 27.37 68.60 1.88 44.79 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.25 -10.71 6.69 99.48 0.67 -10.04 16 19 C -0.15 -4.68 4.96 -19.84 -0.10 -4.78 16 20 C -0.07 -2.18 9.16 22.25 0.20 -1.97 16 21 C -0.21 -6.62 9.21 22.40 0.21 -6.41 16 22 C 0.20 6.44 6.55 38.21 0.25 6.69 16 23 N -0.65 -17.13 3.41 -747.29 -2.55 -19.67 16 24 C 0.09 1.92 10.19 127.77 1.30 3.23 16 25 C 0.09 1.92 10.19 127.77 1.30 3.22 16 26 C -0.20 -6.46 9.21 22.40 0.21 -6.26 16 27 C -0.07 -2.15 9.66 22.25 0.21 -1.93 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.06 1.62 7.72 -2.39 -0.02 1.60 16 31 H 0.42 13.38 7.08 -96.75 -0.68 12.70 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 34 H 0.08 2.11 6.59 -2.39 -0.02 2.09 16 35 H 0.04 1.93 7.52 -2.38 -0.02 1.91 16 36 H 0.03 1.45 6.14 -2.39 -0.01 1.43 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.13 3.57 6.79 -2.91 -0.02 3.55 16 39 H 0.13 3.61 6.14 -2.91 -0.02 3.59 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 1.33 8.07 -2.39 -0.02 1.31 16 42 H 0.07 1.41 6.20 -2.39 -0.01 1.40 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.36 8.07 -2.39 -0.02 1.34 16 45 H 0.06 1.34 6.20 -2.39 -0.01 1.33 16 46 H 0.13 3.61 6.14 -2.91 -0.02 3.59 16 47 H 0.13 3.62 8.03 -2.91 -0.02 3.60 16 Total: -1.00 -71.11 387.70 -0.59 -71.70 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.25 Total: 33.79 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 6.81 Total: -15.85 kcal Atomic # 7 Polarization: -148.70 SS G_CDS: -4.94 Total: -153.64 kcal Atomic # 8 Polarization: -83.42 SS G_CDS: -4.25 Total: -87.67 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.79 kcal Atomic # 16 Polarization: 107.21 SS G_CDS: -0.34 Total: 106.87 kcal Total: -71.11 -0.59 -71.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773083834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.515 kcal (2) G-P(sol) polarization free energy of solvation -71.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds